mRNA_Ecto-sp9_F_contig8954.17145.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8954.17145.1
Unique NamemRNA_Ecto-sp9_F_contig8954.17145.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8954.17145.1 vs.
Match: HSF_DOMAIN (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNL3_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 7.360e-45
Identity = 109/126 (86.51%), Postives = 110/126 (87.30%), Query Frame = 1 
Query:    1 RMSEARMNAKVAASPSVVQALTCLASGLPETSDSEENTQESXXXXXXXXXXXXXXXXXXXXXXXXXAGVKREELMPHKVSEERPDGEAAAAGREMPMPNARRGSKAINDVVTKFSIDQALEQLKGE 378
            RMSEARMNAKVAASPSVVQALTCLASGLPETSDSEENTQES        XXXXXXXXXXXXXXX   GV RE  MPHKVSEERP GEAAAAGREMP+PN RRGSKAINDVVTKFSIDQALEQLKGE
Sbjct:  582 RMSEARMNAKVAASPSVVQALTCLASGLPETSDSEENTQESTAAAVGAAXXXXXXXXXXXXXXXG-TGVNREGFMPHKVSEERPGGEAAAAGREMPLPNPRRGSKAINDVVTKFSIDQALEQLKGE 706
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8954.17145.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
HSF_DOMAIN7.360e-4586.51domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8954contigEcto-sp9_F_contig8954:2303..2680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.3961465-UTR-Ecto-sp9_F_contig8954:2302..23051622930954.3961465-UTR-Ecto-sp9_F_contig8954:2302..2305Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8954 2303..2305 +
1692278965.3118782-UTR-Ecto-sp9_F_contig8954:2302..23051692278965.3118782-UTR-Ecto-sp9_F_contig8954:2302..2305Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8954 2303..2305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.4118626-CDS-Ecto-sp9_F_contig8954:2305..26801622930954.4118626-CDS-Ecto-sp9_F_contig8954:2305..2680Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8954 2306..2680 +
1692278965.3213527-CDS-Ecto-sp9_F_contig8954:2305..26801692278965.3213527-CDS-Ecto-sp9_F_contig8954:2305..2680Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8954 2306..2680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8954.17145.1prot_Ecto-sp9_F_contig8954.17145.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8954 2306..2680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8954.17145.1

>prot_Ecto-sp9_F_contig8954.17145.1 ID=prot_Ecto-sp9_F_contig8954.17145.1|Name=mRNA_Ecto-sp9_F_contig8954.17145.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=125bp
MSEARMNAKVAASPSVVQALTCLASGLPETSDSEENTQESTAAAAGAALS
PSSSSTEPQARGGGGAGVKREELMPHKVSEERPDGEAAAAGREMPMPNAR
RGSKAINDVVTKFSIDQALEQLKGE
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mRNA from alignment at Ecto-sp9_F_contig8954:2303..2680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8954.17145.1 ID=mRNA_Ecto-sp9_F_contig8954.17145.1|Name=mRNA_Ecto-sp9_F_contig8954.17145.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=378bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8954:2303..2680+ (Ectocarpus species9 EcSCA_722f female)
AGAATGTCGGAGGCTCGGATGAACGCCAAGGTTGCCGCTAGCCCGAGCGT
GGTCCAGGCGCTCACCTGCCTCGCTAGCGGTCTGCCCGAGACTAGCGATT
CCGAGGAGAACACGCAGGAATCGACGGCGGCGGCAGCAGGGGCGGCGTTG
TCTCCTTCATCGTCGTCCACCGAGCCGCAGGCTCGCGGCGGCGGCGGGGC
AGGTGTGAAGAGGGAGGAGCTCATGCCGCACAAGGTCTCCGAGGAGAGGC
CGGACGGGGAGGCTGCCGCCGCCGGCCGTGAGATGCCGATGCCGAACGCG
CGCCGAGGGAGCAAGGCCATCAACGACGTCGTGACCAAGTTCTCGATCGA
CCAGGCGCTGGAGCAGCTCAAGGGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8954:2303..2680+

>mRNA_Ecto-sp9_F_contig8954.17145.1 ID=mRNA_Ecto-sp9_F_contig8954.17145.1|Name=mRNA_Ecto-sp9_F_contig8954.17145.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8954:2303..2680+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGGAGGCTCGGATGAACGCCAAGGTTGCCGCTAGCCCGAGCGTGGT
CCAGGCGCTCACCTGCCTCGCTAGCGGTCTGCCCGAGACTAGCGATTCCG
AGGAGAACACGCAGGAATCGACGGCGGCGGCAGCAGGGGCGGCGTTGTCT
CCTTCATCGTCGTCCACCGAGCCGCAGGCTCGCGGCGGCGGCGGGGCAGG
TGTGAAGAGGGAGGAGCTCATGCCGCACAAGGTCTCCGAGGAGAGGCCGG
ACGGGGAGGCTGCCGCCGCCGGCCGTGAGATGCCGATGCCGAACGCGCGC
CGAGGGAGCAAGGCCATCAACGACGTCGTGACCAAGTTCTCGATCGACCA
GGCGCTGGAGCAGCTCAAGGGGGAGATGTCGGAGGCTCGGATGAACGCCA
AGGTTGCCGCTAGCCCGAGCGTGGTCCAGGCGCTCACCTGCCTCGCTAGC
GGTCTGCCCGAGACTAGCGATTCCGAGGAGAACACGCAGGAATCGACGGC
GGCGGCAGCAGGGGCGGCGTTGTCTCCTTCATCGTCGTCCACCGAGCCGC
AGGCTCGCGGCGGCGGCGGGGCAGGTGTGAAGAGGGAGGAGCTCATGCCG
CACAAGGTCTCCGAGGAGAGGCCGGACGGGGAGGCTGCCGCCGCCGGCCG
TGAGATGCCGATGCCGAACGCGCGCCGAGGGAGCAAGGCCATCAACGACG
TCGTGACCAAGTTCTCGATCGACCAGGCGCTGGAGCAGCTCAAGGGGGAG
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