mRNA_Ecto-sp9_F_contig8954.17144.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8954.17144.1
Unique NamemRNA_Ecto-sp9_F_contig8954.17144.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8954.17144.1 vs.
Match: HSF_DOMAIN (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNL3_9PHAE)

HSP 1 Score: 394 bits (1011), Expect = 7.640e-129
Identity = 234/283 (82.69%), Postives = 240/283 (84.81%), Query Frame = 1 
Query:   52 SVDRSSAQQPQPXXXXXXXXXXXXXXXXXXXXXXFGGASPMXXXXXXXXXXXXXXXXXXXVGSMGYLPPLAAAGGQEGGMPMGGPAVEEVGSSARGIGDFRPGQTPMVSSLSRLLENLEHTLEAPLAEEMYTPIGQRNSFCAQMVNIAQVLEEDSSVQQGAEGESRSHRYSYLAQKRRSSVTELAYYLQDMLDEGESNRMITNTPGWTLPPPMPSAPGSLEGAFPSREGSGSGNRVTFKRTAPEDFESYGEYGMGGNVGXXXXXXXXXXSRQAADGMGGPPDA 900
            +VDRSSAQQPQP      XXXXXXXXXXXX    FGGASPM                    GS+GY+PPLAA GG+E GMPMG P VEEVGSSARG+GDFRPGQTPMV SLSRLLENLEHTLEAPLAEEMYTPIGQRNSFCAQMVNIAQVLEED S+QQGAEGESRS R SYLAQKRRSSVTELAYYLQDMLDEGESNRMITNTPGWTLPPPMPSAPGSLEGAFPSREGSGSGNRVTFKRTAPEDFESYGEYGM GNVGXXXXXXXXX SRQAA GMG P DA
Sbjct:  253 NVDRSSAQQPQPHMQQHRXXXXXXXXXXXXMQHRFGGASPMAEQSSPHDDARGGGD----AGSLGYMPPLAAVGGREEGMPMGAPTVEEVGSSARGMGDFRPGQTPMVLSLSRLLENLEHTLEAPLAEEMYTPIGQRNSFCAQMVNIAQVLEEDPSLQQGAEGESRSRRCSYLAQKRRSSVTELAYYLQDMLDEGESNRMITNTPGWTLPPPMPSAPGSLEGAFPSREGSGSGNRVTFKRTAPEDFESYGEYGMAGNVGXXXXXXXXXSSRQAAGGMGAPQDA 531
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8954.17144.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
HSF_DOMAIN7.640e-12982.69domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8954contigEcto-sp9_F_contig8954:75..2163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size902
Cds size900
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8954.17144.1prot_Ecto-sp9_F_contig8954.17144.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8954 75..2161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.2800162-CDS-Ecto-sp9_F_contig8954:74..5121622930954.2800162-CDS-Ecto-sp9_F_contig8954:74..512Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8954 75..512 +
1692278965.2794883-CDS-Ecto-sp9_F_contig8954:74..5121692278965.2794883-CDS-Ecto-sp9_F_contig8954:74..512Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8954 75..512 +
1622930954.293375-CDS-Ecto-sp9_F_contig8954:1171..12611622930954.293375-CDS-Ecto-sp9_F_contig8954:1171..1261Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8954 1172..1261 +
1692278965.2898808-CDS-Ecto-sp9_F_contig8954:1171..12611692278965.2898808-CDS-Ecto-sp9_F_contig8954:1171..1261Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8954 1172..1261 +
1622930954.349012-CDS-Ecto-sp9_F_contig8954:1789..21611622930954.349012-CDS-Ecto-sp9_F_contig8954:1789..2161Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8954 1790..2161 +
1692278965.2995458-CDS-Ecto-sp9_F_contig8954:1789..21611692278965.2995458-CDS-Ecto-sp9_F_contig8954:1789..2161Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8954 1790..2161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8954.17144.1

>prot_Ecto-sp9_F_contig8954.17144.1 ID=prot_Ecto-sp9_F_contig8954.17144.1|Name=mRNA_Ecto-sp9_F_contig8954.17144.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=300bp
GGGGGGGSPFLRASSSGSVDRSSAQQPQPHMQQHRQQQPQHMQQQHQMQH
RFGGASPMSEQSSPHDDARGGGGGGGGVGSMGYLPPLAAAGGQEGGMPMG
GPAVEEVGSSARGIGDFRPGQTPMVSSLSRLLENLEHTLEAPLAEEMYTP
IGQRNSFCAQMVNIAQVLEEDSSVQQGAEGESRSHRYSYLAQKRRSSVTE
LAYYLQDMLDEGESNRMITNTPGWTLPPPMPSAPGSLEGAFPSREGSGSG
NRVTFKRTAPEDFESYGEYGMGGNVGGGGGGGGGGSSRQAADGMGGPPDA
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mRNA from alignment at Ecto-sp9_F_contig8954:75..2163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8954.17144.1 ID=mRNA_Ecto-sp9_F_contig8954.17144.1|Name=mRNA_Ecto-sp9_F_contig8954.17144.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2089bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8954:75..2163+ (Ectocarpus species9 EcSCA_722f female)
GGGGGGGGGGGGGGGGGGGGGTCGCCCTTCTTGAGGGCGTCTTCGTCTGG
CAGCGTGGACCGCTCTTCTGCCCAGCAGCCGCAGCCGCACATGCAGCAGC
ACCGCCAACAGCAGCCGCAGCACATGCAGCAGCAACATCAGATGCAGCAC
CGCTTTGGCGGGGCCTCGCCAATGTCGGAGCAGTCGTCGCCGCACGACGA
CGCGCGCGGCGGCGGCGGCGGCGGCGGCGGCGTTGGTAGCATGGGGTATC
TGCCCCCGCTTGCAGCGGCCGGCGGGCAGGAAGGGGGCATGCCGATGGGG
GGGCCCGCGGTTGAAGAGGTGGGGTCGTCGGCGAGAGGCATAGGGGACTT
CCGACCGGGGCAGACGCCCATGGTGTCGAGCTTGAGCCGGCTGCTGGAGA
ACCTGGAGCACACTCTGGAGGCCCCCCTAGCTGAGGAGGTGCGTTTTCCC
TGTATACTACTTACTGTACATACATACATGTATAGTAGTTGGGGGCAGTG
ACCGAGATGTTTGTTTTGGTGGAACGGGGGATCGTTTGCTTAAAATTCGA
GGTGTTGGAGTGAGACTACAAGAGCCACCACGCCGCCTCTAACTCCTCGC
GTGGTTGGAAAAAGCTCGAATGTGCTGTCGCCGAGCCTGCAGTTTTGGGG
TATGGTGTCACATGCATACCGCTGGTACAAAAGGGGTTTGATGTCATATG
GCTGGGACAACGCAAGGCGGCACATGCATGTATTACGTTGCGGTGCCTTG
TTCTCGGCTGGCTCTTTGCGGGACACGTTCTCGTTCGATAAACTTCAAAG
TGTTTTAGGCAGTAGCAATTGTTCGTGTGCACCCCTCATTCCTACAGAGA
ATAGTGTTGGTACTATCCTCATGTGTGCTGCTAGGCATCGGTGTGGTTTT
CTCTATCGGCTTTATTGGGCTCTTACGTCCGTTCCAGGAAAAGAGAGAGA
GAGAGAGACGCGAACACTGTTCGCGTTGTTAGAAGATGAGACGGACCTCA
GAAGCACGTACATGCTTGACCTCGCCCCCCCCCCCTCCCCCCCCCCTTTT
TGCCCTCCGCGGGCGGGCGATCACCGAACGCTCGGCCGACGACGCAGATG
TACACGCCCATCGGGCAGCGCAACTCCTTCTGCGCGCAGATGGTGAACAT
CGCTCAAGTCCTCGAGGAAGACTCGTCCGTACAGCAGGTGCGTCTTGCGT
TAGGCGTGCTGGTGGTGCGAGAGCCGCAGCCCAGGTCGAGTGCGGACCGG
CGACGTGATTGTGCCCGTGCACAAGCAAATTTCTTGATGTGTGGTGTAGT
GTTGGTCTCGTGGTGGTGACCAGCTGTTTCAACGCCTGCCCGTCCGCTTC
ATGTTTGTTTTGTTTTGGTGGCTCGCCTGGAGAGATTGTCAATCTCGTTC
TCGCCAAGTTTTGTTTGTACCAGGGCGTCTGGGCCTTGTTTCCCTCCCCC
CCGTCTGTGTGGTCGTCGGGTGGTGGTCTACTGGACGTTTGCGTGCGGTG
CTGCCCAATCTGTGTTTTTGAGTTTTCGGTGTGGTGGGTCTGACGTGGTC
CATTGGCCAATCACAACATGGAGACTCTGATCAATCTCCCGGTCGTCGTC
GTGACGAGTTATTACGCTTACCGACAGGCACCAAGAAATCGTTGACATGC
AACATAGCACGTTCATGAATTCAAGTTGTCTTTTCTGTTGGCCGCCCTGC
TCACCGGCTCAGCAGGGGGCCGAGGGAGAATCGAGAAGCCACCGTTACTC
CTACCTCGCCCAGAAGCGACGGTCGTCTGTGACGGAGCTGGCCTACTACC
TGCAGGACATGCTCGACGAGGGAGAGTCGAACCGCATGATCACCAACACG
CCCGGCTGGACGCTGCCGCCACCCATGCCCTCCGCGCCGGGCAGCCTCGA
GGGCGCGTTCCCCTCGCGGGAAGGCAGCGGCAGCGGCAACCGCGTCACCT
TCAAGCGCACCGCTCCAGAGGACTTCGAGAGCTACGGGGAGTACGGGATG
GGCGGCAACGTCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTAGTAGCAG
GCAGGCTGCTGACGGGATGGGGGGTCCGCCGGACGCGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8954:75..2163+

>mRNA_Ecto-sp9_F_contig8954.17144.1 ID=mRNA_Ecto-sp9_F_contig8954.17144.1|Name=mRNA_Ecto-sp9_F_contig8954.17144.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1800bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8954:75..2163+ (Ectocarpus species9 EcSCA_722f female)
GGGGGGGGGGGGGGGGGGGGGTCGCCCTTCTTGAGGGCGTCTTCGTCTGG
CAGCGTGGACCGCTCTTCTGCCCAGCAGCCGCAGCCGCACATGCAGCAGC
ACCGCCAACAGCAGCCGCAGCACATGCAGCAGCAACATCAGATGCAGCAC
CGCTTTGGCGGGGCCTCGCCAATGTCGGAGCAGTCGTCGCCGCACGACGA
CGCGCGCGGCGGCGGCGGCGGCGGCGGCGGCGTTGGTAGCATGGGGTATC
TGCCCCCGCTTGCAGCGGCCGGCGGGCAGGAAGGGGGCATGCCGATGGGG
GGGCCCGCGGTTGAAGAGGTGGGGTCGTCGGCGAGAGGCATAGGGGACTT
CCGACCGGGGCAGACGCCCATGGTGTCGAGCTTGAGCCGGCTGCTGGAGA
ACCTGGAGCACACTCTGGAGGCCCCCCTAGCTGAGGAGGGGGGGGGGGGG
GGGGGGGGGTCGCCCTTCTTGAGGGCGTCTTCGTCTGGCAGCGTGGACCG
CTCTTCTGCCCAGCAGCCGCAGCCGCACATGCAGCAGCACCGCCAACAGC
AGCCGCAGCACATGCAGCAGCAACATCAGATGCAGCACCGCTTTGGCGGG
GCCTCGCCAATGTCGGAGCAGTCGTCGCCGCACGACGACGCGCGCGGCGG
CGGCGGCGGCGGCGGCGGCGTTGGTAGCATGGGGTATCTGCCCCCGCTTG
CAGCGGCCGGCGGGCAGGAAGGGGGCATGCCGATGGGGGGGCCCGCGGTT
GAAGAGGTGGGGTCGTCGGCGAGAGGCATAGGGGACTTCCGACCGGGGCA
GACGCCCATGGTGTCGAGCTTGAGCCGGCTGCTGGAGAACCTGGAGCACA
CTCTGGAGGCCCCCCTAGCTGAGGAGATGTACACGCCCATCGGGCAGCGC
AACTCCTTCTGCGCGCAGATGGTGAACATCGCTCAAGTCCTCGAGGAAGA
CTCGTCCGTACAGCAGATGTACACGCCCATCGGGCAGCGCAACTCCTTCT
GCGCGCAGATGGTGAACATCGCTCAAGTCCTCGAGGAAGACTCGTCCGTA
CAGCAGGGGGCCGAGGGAGAATCGAGAAGCCACCGTTACTCCTACCTCGC
CCAGAAGCGACGGTCGTCTGTGACGGAGCTGGCCTACTACCTGCAGGACA
TGCTCGACGAGGGAGAGTCGAACCGCATGATCACCAACACGCCCGGCTGG
ACGCTGCCGCCACCCATGCCCTCCGCGCCGGGCAGCCTCGAGGGCGCGTT
CCCCTCGCGGGAAGGCAGCGGCAGCGGCAACCGCGTCACCTTCAAGCGCA
CCGCTCCAGAGGACTTCGAGAGCTACGGGGAGTACGGGATGGGCGGCAAC
GTCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTAGTAGCAGGCAGGCTGC
TGACGGGATGGGGGGTCCGCCGGACGCGGGGGCCGAGGGAGAATCGAGAA
GCCACCGTTACTCCTACCTCGCCCAGAAGCGACGGTCGTCTGTGACGGAG
CTGGCCTACTACCTGCAGGACATGCTCGACGAGGGAGAGTCGAACCGCAT
GATCACCAACACGCCCGGCTGGACGCTGCCGCCACCCATGCCCTCCGCGC
CGGGCAGCCTCGAGGGCGCGTTCCCCTCGCGGGAAGGCAGCGGCAGCGGC
AACCGCGTCACCTTCAAGCGCACCGCTCCAGAGGACTTCGAGAGCTACGG
GGAGTACGGGATGGGCGGCAACGTCGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGTAGTAGCAGGCAGGCTGCTGACGGGATGGGGGGTCCGCCGGACGCG
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