mRNA_Ecto-sp9_F_contig8931.17118.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8931.17118.1
Unique NamemRNA_Ecto-sp9_F_contig8931.17118.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8931.17118.1 vs.
Match: Cytochrome (P450 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ4_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 4.230e-36
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:   55 MASLPRLIDGFEAGIADADSKMARWAGVQDQGAGAGVLAVLSSLAALWVAWKFLLRCRLSLKLRRMSRTVPSLR 276
            MASLPRLI GF+AGIADADSKMARWAGVQ+Q AGAGVLA LSSLAALW+AWKFLLRCRL+LKLRRMSRTVPSLR
Sbjct:    1 MASLPRLIGGFQAGIADADSKMARWAGVQEQRAGAGVLAALSSLAALWIAWKFLLRCRLALKLRRMSRTVPSLR 74
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BLAST of mRNA_Ecto-sp9_F_contig8931.17118.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ84_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.490e-34
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:   55 MASLPRLIDGFEAGIADADSKMARWAGVQDQGAGAGVLAVLSSLAALWVAWKFLLRCRLSLKLRRMSRTVPSLR 276
            MASLPRLID F+AGIADADSKMARWAGVQDQGAG GVLA LSSLAALWVAW+FLLRCRL+LKLRRMSRTVPSLR
Sbjct:    1 MASLPRLIDDFQAGIADADSKMARWAGVQDQGAGVGVLAALSSLAALWVAWRFLLRCRLALKLRRMSRTVPSLR 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8931.17118.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Cytochrome4.230e-3690.54P450 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
Uncharacterized5.490e-3491.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8931contigEcto-sp9_F_contig8931:1921..2199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size280
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.4183798-CDS-Ecto-sp9_F_contig8931:1920..21991622930951.4183798-CDS-Ecto-sp9_F_contig8931:1920..2199Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8931 1921..2199 +
1692278964.0318751-CDS-Ecto-sp9_F_contig8931:1920..21991692278964.0318751-CDS-Ecto-sp9_F_contig8931:1920..2199Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8931 1921..2199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8931.17118.1prot_Ecto-sp9_F_contig8931.17118.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8931 1921..2199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8931.17118.1

>prot_Ecto-sp9_F_contig8931.17118.1 ID=prot_Ecto-sp9_F_contig8931.17118.1|Name=mRNA_Ecto-sp9_F_contig8931.17118.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=93bp
AVVSIALLLPHHLAHPTTMASLPRLIDGFEAGIADADSKMARWAGVQDQG
AGAGVLAVLSSLAALWVAWKFLLRCRLSLKLRRMSRTVPSLR*
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mRNA from alignment at Ecto-sp9_F_contig8931:1921..2199+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8931.17118.1 ID=mRNA_Ecto-sp9_F_contig8931.17118.1|Name=mRNA_Ecto-sp9_F_contig8931.17118.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=279bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8931:1921..2199+ (Ectocarpus species9 EcSCA_722f female)
GCAGTTGTCAGCATTGCTCTGCTGTTGCCACACCATCTCGCACACCCCAC
CACCATGGCGAGCCTGCCAAGGTTAATAGATGGGTTTGAGGCTGGTATTG
CTGATGCAGACTCCAAGATGGCCCGCTGGGCTGGCGTACAGGACCAGGGA
GCGGGAGCAGGTGTGTTGGCGGTGCTATCTTCTCTGGCTGCTCTCTGGGT
CGCCTGGAAATTCTTGCTGAGGTGCCGCCTCTCCCTCAAGCTGCGACGCA
TGTCCCGCACGGTCCCATCCCTCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8931:1921..2199+

>mRNA_Ecto-sp9_F_contig8931.17118.1 ID=mRNA_Ecto-sp9_F_contig8931.17118.1|Name=mRNA_Ecto-sp9_F_contig8931.17118.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8931:1921..2199+ (Ectocarpus species9 EcSCA_722f female)
GCAGTTGTCAGCATTGCTCTGCTGTTGCCACACCATCTCGCACACCCCAC
CACCATGGCGAGCCTGCCAAGGTTAATAGATGGGTTTGAGGCTGGTATTG
CTGATGCAGACTCCAAGATGGCCCGCTGGGCTGGCGTACAGGACCAGGGA
GCGGGAGCAGGTGTGTTGGCGGTGCTATCTTCTCTGGCTGCTCTCTGGGT
CGCCTGGAAATTCTTGCTGAGGTGCCGCCTCTCCCTCAAGCTGCGACGCA
TGTCCCGCACGGTCCCATCCCTCAGGTGAGCAGTTGTCAGCATTGCTCTG
CTGTTGCCACACCATCTCGCACACCCCACCACCATGGCGAGCCTGCCAAG
GTTAATAGATGGGTTTGAGGCTGGTATTGCTGATGCAGACTCCAAGATGG
CCCGCTGGGCTGGCGTACAGGACCAGGGAGCGGGAGCAGGTGTGTTGGCG
GTGCTATCTTCTCTGGCTGCTCTCTGGGTCGCCTGGAAATTCTTGCTGAG
GTGCCGCCTCTCCCTCAAGCTGCGACGCATGTCCCGCACGGTCCCATCCC
TCAGGTGA
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