mRNA_Ecto-sp9_F_contig8929.17116.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8929.17116.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME2_ECTSI) HSP 1 Score: 224 bits (572), Expect = 6.510e-74 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1
Query: 64 MATMNAMSRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGIL 402
MATMNAMSRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGIL
Sbjct: 1 MATMNAMSRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGIL 113
BLAST of mRNA_Ecto-sp9_F_contig8929.17116.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T7_9PHAE) HSP 1 Score: 221 bits (563), Expect = 2.750e-64 Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 1
Query: 64 MATMNAMSRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGIL 402
MA MNA+SRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGIL
Sbjct: 1 MANMNAISRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGIL 113
BLAST of mRNA_Ecto-sp9_F_contig8929.17116.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQN8_9STRA) HSP 1 Score: 145 bits (367), Expect = 1.100e-42 Identity = 69/104 (66.35%), Postives = 86/104 (82.69%), Query Frame = 1
Query: 88 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKRTGI 399
R+GKW+ EEEA TARIIHYF+ GVLQLP+GTTLR +LA+KL CDPMRITKKFTG+ CLGKRVYHSCERT AT +++ E+LA LE RF ++LER +++R +
Sbjct: 18 RRGKWSPEEEAYTARIIHYFNTGVLQLPEGTTLRVFLAEKLRCDPMRITKKFTGSACLGKRVYHSCERTPATKAEIQESKEDLANLEQRFLSQLERRRDRRASL 121
BLAST of mRNA_Ecto-sp9_F_contig8929.17116.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4F5_9STRA) HSP 1 Score: 141 bits (356), Expect = 2.280e-41 Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 1
Query: 88 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQA 363
R+GKW+SEEEA T RIIHYF+ GVLQLP+GTTLRAYLA+KL CDPMRITKKFTG++CLGKRVYHSCERT A+ + + E+L++LEARF A
Sbjct: 2 RRGKWSSEEEAYTERIIHYFNTGVLQLPEGTTLRAYLAKKLQCDPMRITKKFTGSSCLGKRVYHSCERTPASPDEITASKEDLSQLEARFLA 93
BLAST of mRNA_Ecto-sp9_F_contig8929.17116.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q146_HETAK) HSP 1 Score: 139 bits (351), Expect = 7.660e-38 Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query: 88 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEK 387
RKGKWT EEE T++IIHYF+ G+LQLP+GTTLR+YLA+KL+CDPMRITKKFTG+ CLGKRVYH + AT+ QA++EL+ LE RF+ RLER K+K
Sbjct: 98 RKGKWTVEEEEFTSKIIHYFNTGILQLPEGTTLRSYLAEKLNCDPMRITKKFTGSQCLGKRVYHQGDVVQATHAQVVQALDELSHLERRFKLRLEREKQK 197
BLAST of mRNA_Ecto-sp9_F_contig8929.17116.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UUW2_9STRA) HSP 1 Score: 131 bits (329), Expect = 2.720e-33 Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = 1
Query: 88 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLE 372
RKGKWT EEE T+RIIH+FS GVL LP+GTTLR+YLA+KL+CDPMRITKKF G +CLGKRVYH C+R+ T + A ELA LE RF+ R+E
Sbjct: 200 RKGKWTVEEEEYTSRIIHHFSTGVLTLPEGTTLRSYLAEKLNCDPMRITKKFAGASCLGKRVYHLCDRSPGTAADIEMAKAELARLEQRFRLRVE 294
BLAST of mRNA_Ecto-sp9_F_contig8929.17116.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJQ1_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.570e-32 Identity = 58/101 (57.43%), Postives = 81/101 (80.20%), Query Frame = 1
Query: 88 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLERNKEKR 390
RKGKWT+EEEA T R+IH F+ G+LQ+ GTTLR+YL++KL+CDPMRITKK+ G++C+GKR++ CERT E +Q+ +ELA+LEA F+A+LE ++ R
Sbjct: 27 RKGKWTAEEEAYTERVIHDFNEGLLQVAAGTTLRSYLSEKLNCDPMRITKKYAGSSCIGKRIFAPCERTPENIERGRQSAKELADLEAAFRAKLESSRSSR 127
BLAST of mRNA_Ecto-sp9_F_contig8929.17116.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZD1_9STRA) HSP 1 Score: 128 bits (322), Expect = 7.080e-32 Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 1
Query: 88 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLE 372
RKGKWT+EEE T+RIIHYFS G+L LP+GTTLR+YL++ L CDPMRITKKF G +CLGKRVY C+R+ AT + A +ELA LE RF+A+++
Sbjct: 216 RKGKWTAEEEEFTSRIIHYFSTGLLTLPEGTTLRSYLSETLSCDPMRITKKFAGASCLGKRVYRLCDRSKATANDNEMAKKELAHLEQRFRAKVQ 310
BLAST of mRNA_Ecto-sp9_F_contig8929.17116.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRG3_9STRA) HSP 1 Score: 123 bits (309), Expect = 1.390e-30 Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1
Query: 88 RKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARL 369
RKGKWT EEE T++IIHYFS G+L LP+GTTLR++LA KL+CDPMRITKK+ G CLGKR YH CER T ++A EL +LE RFQ R+
Sbjct: 366 RKGKWTLEEEEYTSKIIHYFSRGLLTLPEGTTLRSFLADKLNCDPMRITKKYAGAACLGKRAYHLCERPQVTIADIERANAELRQLEHRFQLRV 459
BLAST of mRNA_Ecto-sp9_F_contig8929.17116.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJF2_9STRA) HSP 1 Score: 120 bits (300), Expect = 3.090e-29 Identity = 60/101 (59.41%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 70 TMNAMSRKGKWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKRVYHSCERTTATYEVAKQAVEELAELEARFQARLE 372
T + RKGKWT EEE T+RII YFS G+L LPDG TLR+YLA KL+CDPMRITKKFTG CLG+R YH +R A++ + A EL LE RF+ R+E
Sbjct: 51 TASKKLRKGKWTIEEEEYTSRIIQYFSTGLLTLPDGATLRSYLADKLNCDPMRITKKFTGACCLGRRAYHLRDRPRASFAEVEMANLELLHLERRFRLRVE 151 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8929.17116.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8929.17116.1 >prot_Ecto-sp9_F_contig8929.17116.1 ID=prot_Ecto-sp9_F_contig8929.17116.1|Name=mRNA_Ecto-sp9_F_contig8929.17116.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=134bp QQQQPRPTEHLGGHEGHERYHMATMNAMSRKGKWTSEEEALTARIIHYFSback to top mRNA from alignment at Ecto-sp9_F_contig8929:392..1193- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8929.17116.1 ID=mRNA_Ecto-sp9_F_contig8929.17116.1|Name=mRNA_Ecto-sp9_F_contig8929.17116.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=802bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8929:392..1193- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8929:392..1193- >mRNA_Ecto-sp9_F_contig8929.17116.1 ID=mRNA_Ecto-sp9_F_contig8929.17116.1|Name=mRNA_Ecto-sp9_F_contig8929.17116.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8929:392..1193- (Ectocarpus species9 EcSCA_722f female)back to top |