mRNA_Ecto-sp9_F_contig8924.17113.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8924.17113.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR0_ECTSI) HSP 1 Score: 286 bits (731), Expect = 8.120e-93 Identity = 144/152 (94.74%), Postives = 144/152 (94.74%), Query Frame = 1
Query: 1 GRSLSSGAVGFAVGAAVIHTVAVVLGAPIFRRVPETAAFSLLMSSLTSLPVSVTSRRPLEACAAFLRGTRPALHEPGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLLLLGYQILENVSRAFSVWSSEWRAEKCA 456
GR LSSGAVGFAVGAAVIHTVAVVLGAPIFRR PETAAFSLLMSS TSLPVSVTS RPLEA AAFLRGTRPALHE GAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLLLLGYQILENVSRA SVWSSEWRAEK A
Sbjct: 94 GRRLSSGAVGFAVGAAVIHTVAVVLGAPIFRRAPETAAFSLLMSSFTSLPVSVTSHRPLEAFAAFLRGTRPALHELGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLLLLGYQILENVSRAVSVWSSEWRAEKRA 245
BLAST of mRNA_Ecto-sp9_F_contig8924.17113.1 vs.
Match: Phosphatidylinositol (glycan anchor biosynthesis, class F n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RV09_PETMA) HSP 1 Score: 90.5 bits (223), Expect = 1.870e-18 Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 1
Query: 55 HTVAVVLGAPIFRRVPETAAFSLLMSSLTSLPVSVTSRRPLEA-CAAFLRGTRPALHEPGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLLLL 381
H V ++ GAP+ ET FS+L+++ T+LP L A F R ++ E G V C ++GAWLGA+P+ LDW++PWQAWP+ G + G++LG LL L
Sbjct: 16 HAVTILFGAPVIHLARETFVFSILLTTFTALPCLCILGPNLSAWLRVFTRSGAVSVWEQGLCVGTMCTLMGAWLGALPIPLDWDRPWQAWPITCSMGAICGYALGLLLSL 125
BLAST of mRNA_Ecto-sp9_F_contig8924.17113.1 vs.
Match: phosphatidylinositol-glycan (biosynthesis class F protein-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142579EF) HSP 1 Score: 91.7 bits (226), Expect = 8.360e-18 Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 55 HTVAVVLGAPIFRRVPETAAFSLLMSSLTSLPVSVTSRRPLEACAAFLRGTRPALHEPGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLLLL---GYQILENVSRAFS 420
H ++++ GA IF ET FS+L+S+L SLP + + EA F+ G E M A C +LGAW+GA+P+ LDW++PWQ WP+ G ++G G LL G+ +L+ R S
Sbjct: 124 HVISILFGAYIFENFEETFLFSVLVSTLVSLPCLLVNELDYEAWNRFISGCCLPGVESYVMTVACCSLLGAWVGAVPIPLDWDRPWQVWPISCSIGVVIGHGTGLLLCTAHAGFNVLQQFRRGKS 248
BLAST of mRNA_Ecto-sp9_F_contig8924.17113.1 vs.
Match: phosphatidylinositol-glycan (biosynthesis class F protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014031A22) HSP 1 Score: 90.5 bits (223), Expect = 1.290e-17 Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 1
Query: 55 HTVAVVLGAPIFRRVPETAAFSLLMSSLTSLPVSVTSRRPLEA-CAAFLRGTRPALHEPGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLLLL 381
H V V+ GAP+ ET FS+L+++ T+LP L A F R ++ E G V C ++GAWLGA+P+ LDW++PWQAWP+ G + G++LG LL L
Sbjct: 98 HAVTVLFGAPVIHLARETFVFSILLTTFTALPCLCILGPNLSAWLRVFTRSGAVSVWEQGLCVGTMCTLMGAWLGALPIPLDWDRPWQAWPITCSMGAVCGYALGLLLSL 207
BLAST of mRNA_Ecto-sp9_F_contig8924.17113.1 vs.
Match: phosphatidylinositol-glycan (biosynthesis class F protein-like n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A801_BRABE) HSP 1 Score: 88.2 bits (217), Expect = 7.920e-17 Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 1
Query: 55 HTVAVVLGAPIFRRVPETAAFSLLMSSLTSLPVSVTSRRPLEACAAFLRGTRPALHEPGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLL 375
H +AV+ GAP+ ET +++LLM++LT+LP LE A + + +E C V+GAWLGA P+ LDW++PWQ WP+P G LLG ++G +L
Sbjct: 95 HIIAVLYGAPLQEDTEETFSWALLMATLTALPCWCMLGSRLETWVAVVLNRPESENESFLQTTVLCTVVGAWLGAFPIPLDWDRPWQVWPIPCSIGALLGHTVGLVL 201
BLAST of mRNA_Ecto-sp9_F_contig8924.17113.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z3M2_BRAFL) HSP 1 Score: 85.1 bits (209), Expect = 1.860e-16 Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 1
Query: 55 HTVAVVLGAPIFRRVPETAAFSLLMSSLTSLPVSVTSRRPLEACAAFLRGTRPALHEPGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLL 375
H +AV+ GAP+ ET +++LLM++LT+LP LE A + + E C V+GAWLGA P+ LDW++PWQ WP+P G LLG + G +L
Sbjct: 20 HVIAVLYGAPLQEDTEETFSWALLMATLTALPCWCMLGSRLETWVAVVLNRPESEIESFLQTTVLCTVVGAWLGAFPIPLDWDRPWQVWPIPCSIGALLGHTGGLVL 126
BLAST of mRNA_Ecto-sp9_F_contig8924.17113.1 vs.
Match: BQ2448_6682 (protein n=1 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238FKC7_9BASI) HSP 1 Score: 88.6 bits (218), Expect = 3.240e-16 Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 43 AAVIHTVAVVLGAPIFRRVPETAAFSLLMSSLTSLPVSVT-----SRRPLEACAAFLRGTRPALH-EPGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLLLL 381
A VIH +A LGAP+ R +PET SLL+S L LP+++T ++P L P H E ++PA + GAWLGA+P+ LDW++ WQ WP G LLG +G ++ L
Sbjct: 185 ALVIHVIAFTLGAPLIRSIPETFLLSLLVSILAFLPLAITFGQPHPKKPERFLWLRLFSLAPQTHLEVALLLPALGALAGAWLGAVPIPLDWDRAWQKWPTTCVVGALLGHGVGSIVAL 303
BLAST of mRNA_Ecto-sp9_F_contig8924.17113.1 vs.
Match: phosphatidylinositol-glycan (biosynthesis class F protein n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A53ED) HSP 1 Score: 85.5 bits (210), Expect = 7.650e-16 Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 55 HTVAVVLGAPIFRRVPETAAFSLLMSSLTSLPVSVTSRRPLEACAAFLRGTRPALHEPGAMVPAACCV----LGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLLL 378
H +AV+ GAP F + ET+ F L+M+ +T LP LE F R E CC+ LGAWLGAIP+ LDW++PWQ WP+ GG++G S+G L +
Sbjct: 95 HVIAVLYGAPFFTKTEETSTFGLVMAMITFLPACCVLGIELET---FYRVFTSTWFECTIESYYLCCIVMTILGAWLGAIPIPLDWDRPWQVWPITCTVGGIIGHSVGVLTI 203
BLAST of mRNA_Ecto-sp9_F_contig8924.17113.1 vs.
Match: phosphatidylinositol-glycan (biosynthesis class F protein isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HKH4_LINUN) HSP 1 Score: 84.3 bits (207), Expect = 1.850e-15 Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 1
Query: 49 VIHTVAVVLGAPIFRRVPETAAFSLLMSSLTSLP-VSVTSRRPLEACAAFLR----GTRPALHEPGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLLLLGYQILENVSRAFS 420
V HT+AV+ GAP+F V ET ++L+++ +LP + V R E F + + + E + C VLGAWLGA P+ LDW++PWQ WP+ G L G+S G + + + +N+ + S
Sbjct: 84 VFHTIAVLYGAPLFSSVSETFHLAMLLATTAALPGLMVLGIRKEEWTRLFFKTRIFSSPSSALEISILASGVCSVLGAWLGAFPIPLDWDRPWQVWPISCVIGTLAGYSCGLIFATCFILYQNMKGSKS 212
BLAST of mRNA_Ecto-sp9_F_contig8924.17113.1 vs.
Match: Phospho-ethanolamine (N-methyltransferase,domain-containing protein n=2 Tax=Schistosoma japonicum TaxID=6182 RepID=C1LFZ3_SCHJA) HSP 1 Score: 82.4 bits (202), Expect = 2.820e-15 Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 55 HTVAVVLGAPIFRRVPETAAFSLLMSSLTSLPVSVTSRRPLEACAAFLRGTRPALHEPGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLLLLGYQILENVSR 411
+ V ++LGAP+F + ET SL+++ T+LP +T L+ + L + P E CV+GAWL A L LDW++PWQAWP+P G +LG +G +L Y +VS+
Sbjct: 20 YVVCILLGAPLFEQWKETGLMSLILTICTNLPFLMTFEGNLDNLRSVLAPSLP--EEKFVAFIDYGCVIGAWLSAGFLVLDWDRPWQAWPIPCVVGAILGTFVGWILFKIYSYFSHVSQ 136 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8924.17113.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8924.17113.1 >prot_Ecto-sp9_F_contig8924.17113.1 ID=prot_Ecto-sp9_F_contig8924.17113.1|Name=mRNA_Ecto-sp9_F_contig8924.17113.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=111bp MSSLTSLPVSVTSRRPLEACAAFLRGTRPALHEPGAMVPAACCVLGAWLGback to top mRNA from alignment at Ecto-sp9_F_contig8924:1913..5040- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8924.17113.1 ID=mRNA_Ecto-sp9_F_contig8924.17113.1|Name=mRNA_Ecto-sp9_F_contig8924.17113.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3128bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8924:1913..5040- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8924:1913..5040- >mRNA_Ecto-sp9_F_contig8924.17113.1 ID=mRNA_Ecto-sp9_F_contig8924.17113.1|Name=mRNA_Ecto-sp9_F_contig8924.17113.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8924:1913..5040- (Ectocarpus species9 EcSCA_722f female)back to top |