mRNA_Ecto-sp9_F_contig8923.17112.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8923.17112.1
Unique NamemRNA_Ecto-sp9_F_contig8923.17112.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8923.17112.1 vs.
Match: U-box (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ7_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 4.150e-59
Identity = 99/113 (87.61%), Postives = 99/113 (87.61%), Query Frame = 2 
Query:   11 MRGSEHSSEGLSGNERDGSGDASSKNADYFAPQXXXXXXXXXXXLCPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKAVFKNWSLVSSSPSPSFSSEPGT 349
            MRGSEH SEGLS NERDGSGDASS NADYFAPQ     X     LCPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETK VFKNWSLVSSSPSPSFSSEPGT
Sbjct:    1 MRGSEHCSEGLSRNERDGSGDASSTNADYFAPQQQQHQXQHQH-LCPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKVVFKNWSLVSSSPSPSFSSEPGT 112
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BLAST of mRNA_Ecto-sp9_F_contig8923.17112.1 vs.
Match: Protein (kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 8.730e-33
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:  167 MEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKAVFKNWSLVSSSPSPSFSSEPG 346
            MEDPAVAADGYTYERTAIE WLSEHDTSPVTGKALETK VFKNWSLVSSSPSPSFSSEPG
Sbjct:    1 MEDPAVAADGYTYERTAIECWLSEHDTSPVTGKALETKVVFKNWSLVSSSPSPSFSSEPG 60
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BLAST of mRNA_Ecto-sp9_F_contig8923.17112.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF69_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.780e-17
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  146 CPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKAVFKNWSL 304
            CPIT  PM DP VAADG+TYERTAI RW SEHDTSP+TG+ L TKA+F N+++
Sbjct:   79 CPITGAPMCDPVVAADGHTYERTAILRWFSEHDTSPLTGEVLVTKALFPNFAI 131
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BLAST of mRNA_Ecto-sp9_F_contig8923.17112.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFM5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.590e-17
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 2 
Query:  146 CPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKAVFKNWSLVSSSP 319
            CPIT  PM +P VAADG+TYER+A+ERWL +HDTSP+TG+ L TKA+F N +L +++P
Sbjct:   37 CPITGAPMCEPVVAADGHTYERSAMERWLRDHDTSPLTGEVLPTKALFPNRTLAATNP 94
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BLAST of mRNA_Ecto-sp9_F_contig8923.17112.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EJ12_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.290e-13
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:  146 CPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKAVFKNWSLVSS 313
            CPIT  PM+DP VAADG+TYER AI RWL   D SP+TG+ L  K +  N+ L+SS
Sbjct:   37 CPITGQPMKDPVVAADGHTYERHAIRRWLQTSDMSPLTGQTLSHKELVPNYLLLSS 92
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BLAST of mRNA_Ecto-sp9_F_contig8923.17112.1 vs.
Match: U-box (domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DTE4_EMIHU)

HSP 1 Score: 69.3 bits (168), Expect = 2.300e-13
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 2 
Query:  143 LCPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKAVFKNWSL 304
            LCPIT   M DP +AADG +YER+AIERWL+   TSP+TG+ALE   +F N SL
Sbjct:    9 LCPITTEVMADPVMAADGQSYERSAIERWLTTKSTSPLTGEALEYTGLFPNHSL 62
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8923.17112.1 vs.
Match: U-box (domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BFN9_EMIHU)

HSP 1 Score: 68.9 bits (167), Expect = 3.020e-13
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 2 
Query:  146 CPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKAVFKNWSL 304
            CPIT   M +P +AADG +YER+AIERWL+   TSP+TG+ALE   +F N+SL
Sbjct:    8 CPITTEVMSEPVMAADGQSYERSAIERWLATKSTSPLTGEALENTGLFPNYSL 60
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BLAST of mRNA_Ecto-sp9_F_contig8923.17112.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R752_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.330e-13
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:  146 CPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKAVFKNWSLVSS 313
            CPIT  PM+DP VAADG+TYER AI RWL   D SP+TG+ L  K +  N+ L+SS
Sbjct:   79 CPITGQPMKDPVVAADGHTYERHAIRRWLQTSDMSPLTGQTLSHKELVPNYLLLSS 134
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8923.17112.1 vs.
Match: U-box (domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EAQ5_EMIHU)

HSP 1 Score: 68.2 bits (165), Expect = 6.360e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 2 
Query:  143 LCPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKAVFKNWSL 304
            +CPIT   M DP VAADG +YER+AIERWL+   TSP+T   LE+K +F N SL
Sbjct:    7 ICPITTEIMSDPVVAADGQSYERSAIERWLATKSTSPLTSAELESKGLFPNHSL 60
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8923.17112.1 vs.
Match: Hypothetical (protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WUR5_EMIHU)

HSP 1 Score: 69.3 bits (168), Expect = 8.100e-13
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 2 
Query:  143 LCPITRCPMEDPAVAADGYTYERTAIERWLSEHDTSPVTGKALETKAVFKNWSL 304
            +CPIT   M DP VAADG +YER+AIERWLS   TSP+T   LE+K +F N SL
Sbjct:   58 ICPITTEIMSDPVVAADGQSYERSAIERWLSTKSTSPLTSAELESKGLFPNHSL 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8923.17112.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U-box4.150e-5987.61domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Protein8.730e-3396.67kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
Hypothetical1.780e-1769.81protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Hypothetical2.590e-1762.07protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical2.290e-1358.93protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
U-box2.300e-1361.11domain-containing protein (Fragment) n=1 Tax=Emili... [more]
U-box3.020e-1358.49domain-containing protein (Fragment) n=1 Tax=Emili... [more]
Hypothetical6.330e-1358.93protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
U-box6.360e-1359.26domain-containing protein (Fragment) n=1 Tax=Emili... [more]
Hypothetical8.100e-1361.11protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8923contigEcto-sp9_F_contig8923:1693..3455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionU box domain
Ec32 orthologEc-22_002200.2
Exons3
Model size350
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8923.17112.1prot_Ecto-sp9_F_contig8923.17112.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8923 1693..3396 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930950.0944793-CDS-Ecto-sp9_F_contig8923:1692..18321622930950.0944793-CDS-Ecto-sp9_F_contig8923:1692..1832Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8923 1693..1832 -
1692278963.373037-CDS-Ecto-sp9_F_contig8923:1692..18321692278963.373037-CDS-Ecto-sp9_F_contig8923:1692..1832Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8923 1693..1832 -
1622930950.1406376-CDS-Ecto-sp9_F_contig8923:2595..26991622930950.1406376-CDS-Ecto-sp9_F_contig8923:2595..2699Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8923 2596..2699 -
1692278963.3970976-CDS-Ecto-sp9_F_contig8923:2595..26991692278963.3970976-CDS-Ecto-sp9_F_contig8923:2595..2699Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8923 2596..2699 -
1622930950.1783853-CDS-Ecto-sp9_F_contig8923:3349..33961622930950.1783853-CDS-Ecto-sp9_F_contig8923:3349..3396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8923 3350..3396 -
1692278963.4070914-CDS-Ecto-sp9_F_contig8923:3349..33961692278963.4070914-CDS-Ecto-sp9_F_contig8923:3349..3396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8923 3350..3396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930950.302682-UTR-Ecto-sp9_F_contig8923:3396..34551622930950.302682-UTR-Ecto-sp9_F_contig8923:3396..3455Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8923 3397..3455 -
1692278963.4172618-UTR-Ecto-sp9_F_contig8923:3396..34551692278963.4172618-UTR-Ecto-sp9_F_contig8923:3396..3455Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8923 3397..3455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8923.17112.1

>prot_Ecto-sp9_F_contig8923.17112.1 ID=prot_Ecto-sp9_F_contig8923.17112.1|Name=mRNA_Ecto-sp9_F_contig8923.17112.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=97bp
MVVVMPARRTPIISHRNSNSSINSSIIIFAPSRGARWKIRPLQRTATHTR
GPPSSAGFRSTIQVPSPARPSRQRRSSRIGRSCPHRHPLPSLLSLGH
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mRNA from alignment at Ecto-sp9_F_contig8923:1693..3455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8923.17112.1 ID=mRNA_Ecto-sp9_F_contig8923.17112.1|Name=mRNA_Ecto-sp9_F_contig8923.17112.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1763bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8923:1693..3455- (Ectocarpus species9 EcSCA_722f female)
GGTGCTGCCAATGAGAGGCTCCGAACACAGCAGCGAGGGGCTATCAGGAA
ACGAACGTGATGGTAGTGGTGATGCCAGCTCGAAGAACGCCGATTATTTC
GCACCGGTAAGATATTAGCTCGAAGAAAGCGGGCCAATCGGTGCGCACCT
ACGTAGCTTCCAGGTACATAATCGTGAGCTCCACTCGGTGCTCGTGCGAC
AATGCCGCACGGCGTTCGTGGGTGGAGATGGAAGGAGGAGGGCAACTACC
GTCCATGTCGGTCGTTTCATTTTACGCCAGGCGCCCTCCCCCCGGTGTCA
TTTCGAACGCAACAGCAGTGCTCGTCCCCCTCTTACCATTCGATGTTCCT
CACGTTTCTATCTCACCATGAAAATTTTGAGTCCCGGCCCTCTTGTCCGA
AAGATGATACTAGTCCTTCTTGCGGGCAGCCCTTTCTTTCCAAAGATTGA
TTCGAGTGTTTTCTTAAGAACTGTTCGAGTGGGTGATACAACTTTTCGTG
CGTTCAAGGCTGACATATATTGTCTTGTCATAGCAGCGCTCTGTCCGAGA
ATGCTACATTCCTTGTTAAAGCCATCACCTTCTTTCGTGTGCACCGCTCG
CTTTCGAGAGCTGCGCTCGCTCTCGCGCCAGGACATGGGGCAAGCTTTGC
AATGTCAGAGTGTAGTAACAGTCAGCGGGTGACCCGTGGCGTTACTGCCC
TCGCGTCCGTGCTCCCTGTGTCATCCCTGCCATCACCGCCTCTGTTCGTG
TCACAGCAACAGCAACAGCAGCATCAACAGCAGCATCATCATCTTTGCCC
CATCACGAGGTGCCCGATGGAAGATCCGGCCGTTGCAGCGGACGGCTACA
CATACGAGAGGTATGATTTCGGCGTTGTTTTCGGTCTGTGGTATGTCATG
TGTCTTGTTTGGTTCTTTGGTTTCCCAATATTCAAGGCAAATCGAGTTTT
TTTGTATGCCCCCCGGCTCTCTGCTCTTATCTGCGGAGCTCGACCCGGCG
TCACGCTCAAGATTCCTCTGCGATGTAGGCCTTCGTTTCTATAGGCCGGA
AGCGTGCGGAGCCTCGAAATGCCCCGAAGTGCATCAGGAACTCAGAGTTT
TTTTTGTGTCACTCCATCCAACCTCAAAACAAATGCTTTTTGCATATGTT
TGACGTCCCCTCGAAACCGAGCATGGTTTTCCATGCCTGCTGCGGCTGCT
GCTGCGGTGGTGGTTGTTGTTGCTGCTGCCTTGACGTGTATAGTAGCACC
CCTGCTGACTTGTCGTCGTCCCGTGCGATAGCCTGTCACGAAACAATATC
CGTGGTATGGCCACAGGGTTATCCAAATGCTTGCAAACGATTTGAGAAGG
TCCCCATCGGTTTCCGGAGTTGCGTTTGCATGGAGGAAACATCGCATACC
TGTCAAAGTTGACAATGGTGAGCAAGCCCATTCTTGGTGGTGTGGGATCT
TGCCAGATGGCCATTTGCGTGCTGAAGCTGCGTGTCCCACACCTTGTTGG
GTGGTTGATTCCTCCCTTATGGTCTCATCGCTCGAGGTATCTTCCCACTC
GACGGTTGGCATCTCAATTGAACACCTCCGATCGACGGATCTACACTTTC
TTCTTATTTTGTTACTTCAACAGGACCGCCATCGAGCGCTGGCTTTCGGA
GCACGATACAAGTCCCGTCACCGGCAAGGCCCTCGAGACAAAGGCGGTCT
TCAAGAATTGGTCGCTCGTGTCCTCATCGCCATCCCCTTCCTTCTCTTCT
GAGCCTGGGACAT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8923:1693..3455-

>mRNA_Ecto-sp9_F_contig8923.17112.1 ID=mRNA_Ecto-sp9_F_contig8923.17112.1|Name=mRNA_Ecto-sp9_F_contig8923.17112.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8923:1693..3455- (Ectocarpus species9 EcSCA_722f female)
ATGGTAGTGGTGATGCCAGCTCGAAGAACGCCGATTATTTCGCACCGATG
GTAGTGGTGATGCCAGCTCGAAGAACGCCGATTATTTCGCACCGCAACAG
CAACAGCAGCATCAACAGCAGCATCATCATCTTTGCCCCATCACGAGGTG
CCCGATGGAAGATCCGGCCGTTGCAGCGGACGGCTACACATACGAGAGCA
ACAGCAACAGCAGCATCAACAGCAGCATCATCATCTTTGCCCCATCACGA
GGTGCCCGATGGAAGATCCGGCCGTTGCAGCGGACGGCTACACATACGAG
AGGACCGCCATCGAGCGCTGGCTTTCGGAGCACGATACAAGTCCCGTCAC
CGGCAAGGCCCTCGAGACAAAGGCGGTCTTCAAGAATTGGTCGCTCGTGT
CCTCATCGCCATCCCCTTCCTTCTCTTCTGAGCCTGGGACATGACCGCCA
TCGAGCGCTGGCTTTCGGAGCACGATACAAGTCCCGTCACCGGCAAGGCC
CTCGAGACAAAGGCGGTCTTCAAGAATTGGTCGCTCGTGTCCTCATCGCC
ATCCCCTTCCTTCTCTTCTGAGCCTGGGACAT
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