mRNA_Ecto-sp9_F_contig892.17108.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig892.17108.1 vs.
Match: Transcription (elongation factor 1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV5_ECTSI) HSP 1 Score: 214 bits (544), Expect = 3.660e-65 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1
Query: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNAVDAAAEEHKDDEQFIDDQEIAEG 315
MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNAVDAAAEEHKDDEQFIDDQEIAEG
Sbjct: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNAVDAAAEEHKDDEQFIDDQEIAEG 105
BLAST of mRNA_Ecto-sp9_F_contig892.17108.1 vs.
Match: Transcription (elongation factor 1 homolog n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U4B4_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.080e-25 Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 1
Query: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNA 246
MGRRK STKKIV +K + +VFKCPFC+HD V+C M++ L CR+C +Y+ INYL+EPIDVYTDWIDECEA+++
Sbjct: 1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLTCRICSESYQSNINYLSEPIDVYTDWIDECEALHS 82
BLAST of mRNA_Ecto-sp9_F_contig892.17108.1 vs.
Match: Transcription (elongation factor 1 homolog n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LI04_9STRA) HSP 1 Score: 108 bits (271), Expect = 2.070e-25 Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1
Query: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVN 243
MGRRK STKKIV +K + +VFKCPFC+HD V+C M++ L CR+C +Y+ INYL+EPIDVYTDWIDECEA++
Sbjct: 1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECEALH 81
BLAST of mRNA_Ecto-sp9_F_contig892.17108.1 vs.
Match: Transcription (elongation factor 1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT2_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.160e-25 Identity = 52/82 (63.41%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNA 246
MGRRK STKKI KK TLD FKCPFC HDKVV+CTMN K+ L CR CD Y INYL+EPID++T+WID EA +A
Sbjct: 1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHA 82
BLAST of mRNA_Ecto-sp9_F_contig892.17108.1 vs.
Match: Transcription (elongation factor 1 homolog n=16 Tax=Oomycota TaxID=4762 RepID=M4B5A6_HYAAE) HSP 1 Score: 107 bits (266), Expect = 9.960e-25 Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = 1
Query: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNA 246
MGRRKK+TKK+ +K + VFKCPFC+HD+ VEC M+++ L CR+C +++ I+YL+ PIDVYTDWIDECEA+NA
Sbjct: 1 MGRRKKATKKVQTRKKQAVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 82
BLAST of mRNA_Ecto-sp9_F_contig892.17108.1 vs.
Match: Transcription (elongation factor 1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SPD8_9STRA) HSP 1 Score: 108 bits (270), Expect = 9.970e-25 Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 1
Query: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNA 246
MGRRKKSTKKI +K + VFKCPFC+HD+ VEC M+++ L CR+C +++ I+YL+ PIDVYTDWIDECEA+NA
Sbjct: 46 MGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 127
BLAST of mRNA_Ecto-sp9_F_contig892.17108.1 vs.
Match: Transcription (elongation factor 1 homolog n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNQ0_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.640e-24 Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 1
Query: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNA 246
MGRRKKSTKKI +K + VFKCPFC+HD+ VEC M+++ L CR+C +++ I+YL+ PIDVYTDWIDECEA+NA
Sbjct: 52 MGRRKKSTKKISTRKKQIVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 133
BLAST of mRNA_Ecto-sp9_F_contig892.17108.1 vs.
Match: Uncharacterized (protein n=15 Tax=Phytophthora TaxID=4783 RepID=H3HB17_PHYRM) HSP 1 Score: 108 bits (270), Expect = 2.790e-22 Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = 1
Query: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNA 246
MGRRKKSTKKI +K + VFKCPFC+HD+ VEC M+++ L CR+C +++ I+YL+ PIDVYTDWIDECEA+NA
Sbjct: 310 MGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 391
BLAST of mRNA_Ecto-sp9_F_contig892.17108.1 vs.
Match: Transcription (elongation factor 1 homolog n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J6E9_PLABS) HSP 1 Score: 97.1 bits (240), Expect = 5.100e-21 Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNA 246
MG+RK S K++V K L F CPFCNH VEC M + E A + CR+CD NY M IN LTEP+DVY +WIDECE NA
Sbjct: 1 MGKRK-SKKRVVRKVVDKLATAFDCPFCNHSLTVECKMKRSENVAEISCRICDANYRMPINSLTEPVDVYCEWIDECEQANA 81
BLAST of mRNA_Ecto-sp9_F_contig892.17108.1 vs.
Match: transcription (elongation factor 1 homolog n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC465E2) HSP 1 Score: 97.1 bits (240), Expect = 7.380e-21 Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNAVD 252
MG+RK S K KK L+ VF CPFCNH+K V CT+++KE L C +C Y IN L+EPID+Y++WIDECE VN +D
Sbjct: 1 MGKRKSSAKPAPKKKMEKLESVFNCPFCNHEKSVNCTIDRKEMIGELTCCICQEKYSTAINNLSEPIDIYSEWIDECEKVNDMD 84 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig892.17108.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig892.17108.1 >prot_Ecto-sp9_F_contig892.17108.1 ID=prot_Ecto-sp9_F_contig892.17108.1|Name=mRNA_Ecto-sp9_F_contig892.17108.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRback to top mRNA from alignment at Ecto-sp9_F_contig892:18256..22280+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig892.17108.1 ID=mRNA_Ecto-sp9_F_contig892.17108.1|Name=mRNA_Ecto-sp9_F_contig892.17108.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4025bp|location=Sequence derived from alignment at Ecto-sp9_F_contig892:18256..22280+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig892:18256..22280+ >mRNA_Ecto-sp9_F_contig892.17108.1 ID=mRNA_Ecto-sp9_F_contig892.17108.1|Name=mRNA_Ecto-sp9_F_contig892.17108.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig892:18256..22280+ (Ectocarpus species9 EcSCA_722f female)back to top |