mRNA_Ecto-sp9_F_contig8918.17106.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8918.17106.1 vs.
Match: CBF (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI) HSP 1 Score: 230 bits (587), Expect = 9.430e-67 Identity = 129/133 (96.99%), Postives = 130/133 (97.74%), Query Frame = 1
Query: 1 PANKPAAGSDKKPAANSKPIAAAAA-NGELAAGGEGGANISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDLRRSLFENARPAASG 396
PANKPAAGSDKKPAAN KPIAAAAA +GELAAGGEGGANISARFYAALYAKLLS DLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDLRRSLFENARPAASG
Sbjct: 622 PANKPAAGSDKKPAANGKPIAAAAAAHGELAAGGEGGANISARFYAALYAKLLSSDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDLRRSLFENARPAASG 754
BLAST of mRNA_Ecto-sp9_F_contig8918.17106.1 vs.
Match: CBF (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY21_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.320e-41 Identity = 82/92 (89.13%), Postives = 82/92 (89.13%), Query Frame = 1
Query: 1 PANKPAAGSDKKPAANSKPIAAAAANGELAAGGEGGANISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQV 276
PANKP A SDKKPAAN KPIA AA AGGEGGANISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQV
Sbjct: 98 PANKPTAASDKKPAANGKPIATAAXXXXXXAGGEGGANISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQV 189
BLAST of mRNA_Ecto-sp9_F_contig8918.17106.1 vs.
Match: CBF (domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUU1_PYTIN) HSP 1 Score: 81.3 bits (199), Expect = 1.210e-14 Identity = 50/95 (52.63%), Postives = 62/95 (65.26%), Query Frame = 1
Query: 112 NISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDLRRSLFENARPAASG 396
++S RFY ALY KLL P L S LFLNLV++A+KAD AR AA KRLLQ+T+V A LF++SE LK P LR +LF+ +P ASG
Sbjct: 396 SVSDRFYTALYEKLLDPKLRETSKHTLFLNLVFRAMKADVSPARTAAMMKRLLQLTSVMTPAFTCAVLFLLSEVLKVKPQLR-TLFD--QPEASG 487
BLAST of mRNA_Ecto-sp9_F_contig8918.17106.1 vs.
Match: CBF (domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZDQ6_PHYSP) HSP 1 Score: 81.3 bits (199), Expect = 1.210e-14 Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 112 NISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDLRRSLFENARPAASG 396
++S RFY ALY KL+ P + S LFLNL+++A+KAD ARA AF KRLLQ+ +V A A LF++SE LK P LR L + +ASG
Sbjct: 445 SVSDRFYTALYGKLIDPKVRETSKHTLFLNLIFRAMKADVSPARAGAFTKRLLQLASVMPPAFACAVLFLLSELLKVKPQLRTLLDQPEAGSASG 539
BLAST of mRNA_Ecto-sp9_F_contig8918.17106.1 vs.
Match: CEBPZ (protein (Fragment) n=1 Tax=Upupa epops TaxID=57439 RepID=A0A7K6AJQ4_UPUEP) HSP 1 Score: 81.3 bits (199), Expect = 1.210e-14 Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 115 ISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDLRRSLFENA 378
+S R+YAALY KLL P L S P LFLNLVYK++KAD R AF KRLLQVT P L+++SE LK P+LR L + A
Sbjct: 488 VSDRYYAALYRKLLDPALASCSKPSLFLNLVYKSLKADVVSRRVKAFVKRLLQVTCGQMPPFICGTLYLLSELLKVKPELRGQLQDQA 575
BLAST of mRNA_Ecto-sp9_F_contig8918.17106.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM83_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.230e-14 Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 109 ANISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDL 354
AN+S RFY A+YA +LS DL +S FLNLVY+A+KAD + AR AFAKRLLQV A AA +FVVSE L+ H +L
Sbjct: 91 ANVSDRFYRAMYAVMLSDDLFTSSKHTTFLNLVYRAMKADVDAARIRAFAKRLLQVAACMPPGFAAGCVFVVSEVLRAHTEL 172
BLAST of mRNA_Ecto-sp9_F_contig8918.17106.1 vs.
Match: CCAAT (enhancer binding protein zeta n=5 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2DA84_CYPVA) HSP 1 Score: 80.5 bits (197), Expect = 2.220e-14 Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 112 NISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDLR 357
++S RFY ALY KLL P L G+S +FLNL+YKA+KAD R AF KRLLQV A A A LF+VSE +K P LR
Sbjct: 517 SVSDRFYVALYRKLLDPGLSGSSRQNMFLNLLYKALKADVAPRRVKAFIKRLLQVGAEQGASFACGALFLVSEVMKAKPGLR 598
BLAST of mRNA_Ecto-sp9_F_contig8918.17106.1 vs.
Match: CCAAT/enhancer-binding (protein zeta-like n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9PF59_9TELE) HSP 1 Score: 77.8 bits (190), Expect = 2.370e-14 Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 112 NISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDLRRSLFENARP 384
+IS R+Y ALY KLL P L +S +FLNL+YK++KAD R AF KRLLQV+A A LF+VSE +K P L+ L E+ P
Sbjct: 124 SISDRYYVALYRKLLDPGLSSSSRHSMFLNLLYKSLKADIVVRRVKAFVKRLLQVSAEQSASFTCGALFLVSEVMKSKPALKILLLEDGIP 214
BLAST of mRNA_Ecto-sp9_F_contig8918.17106.1 vs.
Match: CCAAT (enhancer binding protein zeta n=1 Tax=Poecilia reticulata TaxID=8081 RepID=A0A3P9P9A0_POERE) HSP 1 Score: 80.1 bits (196), Expect = 3.050e-14 Identity = 47/85 (55.29%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 112 NISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDLRRSL 366
++S RFY ALY KLL P L A LFLNL++KA+KAD R AFAKRLLQV A A AA LF+VSE +K P LR L
Sbjct: 459 SVSDRFYVALYRKLLDPGLAAAPRQNLFLNLLFKALKADVAPRRIKAFAKRLLQVAAQQGACFAAGALFLVSEVMKAKPGLRMLL 543
BLAST of mRNA_Ecto-sp9_F_contig8918.17106.1 vs.
Match: CCAAT/enhancer-binding (protein zeta n=3 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3EXJ2_DIPOR) HSP 1 Score: 80.1 bits (196), Expect = 3.080e-14 Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 115 ISARFYAALYAKLLSPDLGGASNPVLFLNLVYKAIKADTEEARAAAFAKRLLQVTAVCDAPLAAAGLFVVSEALKKHPDLRRSLFENARP 384
IS R+Y+ALY K+L P L S +FLNLVYK++KAD R AF KRLLQVT V P L++VSE LK PDLR L ++ P
Sbjct: 539 ISDRYYSALYRKMLDPGLMMCSKQAMFLNLVYKSLKADIVLRRVKAFLKRLLQVTCVQMPPFICGALYLVSEILKAKPDLRSQLDDHLGP 628 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8918.17106.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8918.17106.1 >prot_Ecto-sp9_F_contig8918.17106.1 ID=prot_Ecto-sp9_F_contig8918.17106.1|Name=mRNA_Ecto-sp9_F_contig8918.17106.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=179bp PANKPAAGSDKKPAANSKPIAAAAANGELAAGGEGGANISARFYAALYAKback to top mRNA from alignment at Ecto-sp9_F_contig8918:3132..5205- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8918.17106.1 ID=mRNA_Ecto-sp9_F_contig8918.17106.1|Name=mRNA_Ecto-sp9_F_contig8918.17106.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2074bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8918:3132..5205- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8918:3132..5205- >mRNA_Ecto-sp9_F_contig8918.17106.1 ID=mRNA_Ecto-sp9_F_contig8918.17106.1|Name=mRNA_Ecto-sp9_F_contig8918.17106.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8918:3132..5205- (Ectocarpus species9 EcSCA_722f female)back to top |