mRNA_Ecto-sp9_F_contig8918.17105.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8918.17105.1
Unique NamemRNA_Ecto-sp9_F_contig8918.17105.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8918.17105.1 vs.
Match: CBF (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 6.840e-36
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:   22 GGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD 216
            GGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD
Sbjct:  827 GGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD 891
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BLAST of mRNA_Ecto-sp9_F_contig8918.17105.1 vs.
Match: CBF (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK74_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.110e-35
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:   22 GGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD 216
            GG VQPLWEASLLRSHVHPSVSRFA SLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD
Sbjct:   59 GGEVQPLWEASLLRSHVHPSVSRFAGSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD 123
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BLAST of mRNA_Ecto-sp9_F_contig8918.17105.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM83_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-14
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 QRKKLHPGGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD 216
            +R+ LH G    P WE   L  H HPSV +FA+S++    +  V Y GDPL D +LM FL+R  YKNPKA+D
Sbjct:  317 KREPLHSGAASSPAWELIALAQHYHPSVRKFAESVLEAPVS-GVGYSGDPLKDFSLMSFLDRFVYKNPKAKD 387
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BLAST of mRNA_Ecto-sp9_F_contig8918.17105.1 vs.
Match: CBF (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW61_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.530e-13
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   40 LWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKAR 213
            LWE  LL  H HPSV RFA S++  +  H V Y GDPL D + M FL+R A+KNPK R
Sbjct:  623 LWEVGLLALHFHPSVQRFAASVLDPRARHRVTYSGDPLQDFSTMAFLDRFAFKNPKLR 680
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BLAST of mRNA_Ecto-sp9_F_contig8918.17105.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.590e-13
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   25 GGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPK 207
            GGV  LWEA+ LR H HPSV+ FA  L++    H ++YKGDPL D  LMPFL+R+AY+N K
Sbjct:  865 GGVA-LWEATQLRWHYHPSVAHFALELLTPP-GHGIRYKGDPLVDFGLMPFLDRLAYRNAK 923
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BLAST of mRNA_Ecto-sp9_F_contig8918.17105.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4K5P2_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 5.110e-11
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 QRKKLHPGGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKAR 213
            +R+  +      P WE SLL SH HPSV ++A+ L +    + ++YKGDP+ D++L+ FL+R +++NPK +
Sbjct:    2 KREPKYANASSTPTWELSLLVSHYHPSVRKWAELLST---GNPIEYKGDPILDMSLIAFLDRYSFRNPKRK 69
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BLAST of mRNA_Ecto-sp9_F_contig8918.17105.1 vs.
Match: CBF (domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SZN1_SELML)

HSP 1 Score: 63.5 bits (153), Expect = 4.590e-10
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    4 RKKLHPGGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKAR 213
            R  LH        WE ++L SH+HPSVS  A +++S   N AV Y GDP+ DLA   FL+R A + PKAR
Sbjct:  651 RDPLHCKADQTCWWELAILASHIHPSVSTMAKTILS---NAAVVYSGDPIQDLAFTAFLDRFAERKPKAR 717
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BLAST of mRNA_Ecto-sp9_F_contig8918.17105.1 vs.
Match: CBF (domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FXN2_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 4.600e-10
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 QRKKLHPGGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD 216
            +R+ L+ GG    LWE +LL  H HPSV++FA +++  ++   ++Y  DPL D  L+ FL++  YKN K ++
Sbjct:  682 KREPLYAGGDTTCLWELTLLARHYHPSVAKFAATILMGRK---IEYSSDPLVDFTLIHFLDKFVYKNAKKKE 750
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BLAST of mRNA_Ecto-sp9_F_contig8918.17105.1 vs.
Match: CBF (domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LPV8_STIJA)

HSP 1 Score: 61.2 bits (147), Expect = 3.000e-9
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   43 WEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKAR 213
            WE   L  H HPSVS+FA+ +++ +    + Y G+PL D  +M FLNR  YKNPK+R
Sbjct:  627 WELMKLAGHFHPSVSQFAEKILTGE---TIMYDGNPLDDFTIMKFLNRFVYKNPKSR 680
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BLAST of mRNA_Ecto-sp9_F_contig8918.17105.1 vs.
Match: Putative (CCAAT/enhancer-binding protein zeta n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JG28_STIJA)

HSP 1 Score: 60.8 bits (146), Expect = 3.830e-9
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   43 WEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKAR 213
            WE   L  H HPSVS+FA+ +++ +    + Y G+PL D  +M FLNR  YKNPK+R
Sbjct:   27 WELMKLAGHFHPSVSQFAEKILTGK---TIMYDGNPLDDFTIMKFLNRFVYKNPKSR 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8918.17105.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CBF6.840e-36100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
CBF5.110e-3596.92domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical3.600e-1448.61protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014... [more]
CBF6.530e-1355.17domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Uncharacterized6.590e-1357.38protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical5.110e-1139.44protein (Fragment) n=1 Tax=Paramoeba aestuarina Ta... [more]
CBF4.590e-1047.14domain-containing protein n=4 Tax=Selaginella moel... [more]
CBF4.600e-1038.89domain-containing protein n=1 Tax=Sphaeroforma arc... [more]
CBF3.000e-947.37domain-containing protein n=1 Tax=Stichopus japoni... [more]
Putative3.830e-947.37CCAAT/enhancer-binding protein zeta n=1 Tax=Sticho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8918contigEcto-sp9_F_contig8918:736..951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue5.5e-30
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.2225282-CDS-Ecto-sp9_F_contig8918:735..9511622930949.2225282-CDS-Ecto-sp9_F_contig8918:735..951Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8918 736..951 -
1692278962.9982371-CDS-Ecto-sp9_F_contig8918:735..9511692278962.9982371-CDS-Ecto-sp9_F_contig8918:735..951Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8918 736..951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8918.17105.1prot_Ecto-sp9_F_contig8918.17105.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8918 736..951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8918.17105.1

>prot_Ecto-sp9_F_contig8918.17105.1 ID=prot_Ecto-sp9_F_contig8918.17105.1|Name=mRNA_Ecto-sp9_F_contig8918.17105.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=72bp
QRKKLHPGGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDP
LADLALMPFLNRMAYKNPKARD
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mRNA from alignment at Ecto-sp9_F_contig8918:736..951-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8918.17105.1 ID=mRNA_Ecto-sp9_F_contig8918.17105.1|Name=mRNA_Ecto-sp9_F_contig8918.17105.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8918:736..951- (Ectocarpus species9 EcSCA_722f female)
CAACGAAAAAAATTGCATCCAGGCGGAGGGGTTCAGCCGCTTTGGGAGGC
GTCGCTCCTGCGGTCGCACGTGCACCCTTCCGTGTCCAGGTTCGCCGACA
GCCTGGTGTCCAAGCAGCAGAACCACGCCGTCCAGTACAAAGGGGATCCC
CTTGCCGACCTGGCCCTGATGCCCTTCCTCAACAGGATGGCCTACAAGAA
CCCCAAGGCTAGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8918:736..951-

>mRNA_Ecto-sp9_F_contig8918.17105.1 ID=mRNA_Ecto-sp9_F_contig8918.17105.1|Name=mRNA_Ecto-sp9_F_contig8918.17105.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8918:736..951- (Ectocarpus species9 EcSCA_722f female)
CAACGAAAAAAATTGCATCCAGGCGGAGGGGTTCAGCCGCTTTGGGAGGC
GTCGCTCCTGCGGTCGCACGTGCACCCTTCCGTGTCCAGGTTCGCCGACA
GCCTGGTGTCCAAGCAGCAGAACCACGCCGTCCAGTACAAAGGGGATCCC
CTTGCCGACCTGGCCCTGATGCCCTTCCTCAACAGGATGGCCTACAAGAA
CCCCAAGGCTAGGGACCAACGAAAAAAATTGCATCCAGGCGGAGGGGTTC
AGCCGCTTTGGGAGGCGTCGCTCCTGCGGTCGCACGTGCACCCTTCCGTG
TCCAGGTTCGCCGACAGCCTGGTGTCCAAGCAGCAGAACCACGCCGTCCA
GTACAAAGGGGATCCCCTTGCCGACCTGGCCCTGATGCCCTTCCTCAACA
GGATGGCCTACAAGAACCCCAAGGCTAGGGAC
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