mRNA_Ecto-sp9_F_contig8915.17103.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8915.17103.1
Unique NamemRNA_Ecto-sp9_F_contig8915.17103.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8915.17103.1 vs.
Match: MRG (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ16_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 6.620e-40
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXXVKGGSRSPHGSSTSEDRNGAA 264
            VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXX KGG+RSPHGS+TSEDRNGAA
Sbjct:  108 VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXXXKGGNRSPHGSTTSEDRNGAA 195
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8915.17103.1 vs.
Match: MRG (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ0_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 4.490e-37
Identity = 86/96 (89.58%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:    1 VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXX--------VKGGSRSPHGSSTSEDRNGAA 264
            VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXX        VKGGSR  HGSSTSEDRNGAA
Sbjct:  108 VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLKKSSSWTSGGAXXXXXXXXXXXXXXKVKGGSRPSHGSSTSEDRNGAA 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8915.17103.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
MRG6.620e-4096.59domain-containing protein n=1 Tax=Ectocarpus silic... [more]
MRG4.490e-3789.58domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8915contigEcto-sp9_F_contig8915:3528..4818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size334
Cds size333
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8915.17103.1prot_Ecto-sp9_F_contig8915.17103.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8915 3528..4818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.9529865-CDS-Ecto-sp9_F_contig8915:3527..36161622930948.9529865-CDS-Ecto-sp9_F_contig8915:3527..3616Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8915 3528..3616 +
1692278962.9247918-CDS-Ecto-sp9_F_contig8915:3527..36161692278962.9247918-CDS-Ecto-sp9_F_contig8915:3527..3616Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8915 3528..3616 +
1622930948.9860775-CDS-Ecto-sp9_F_contig8915:4141..42021622930948.9860775-CDS-Ecto-sp9_F_contig8915:4141..4202Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8915 4142..4202 +
1692278962.9365416-CDS-Ecto-sp9_F_contig8915:4141..42021692278962.9365416-CDS-Ecto-sp9_F_contig8915:4141..4202Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8915 4142..4202 +
1622930949.0066135-CDS-Ecto-sp9_F_contig8915:4635..48181622930949.0066135-CDS-Ecto-sp9_F_contig8915:4635..4818Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8915 4636..4818 +
1692278962.9473214-CDS-Ecto-sp9_F_contig8915:4635..48181692278962.9473214-CDS-Ecto-sp9_F_contig8915:4635..4818Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8915 4636..4818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8915.17103.1

>prot_Ecto-sp9_F_contig8915.17103.1 ID=prot_Ecto-sp9_F_contig8915.17103.1|Name=mRNA_Ecto-sp9_F_contig8915.17103.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=111bp
VQKSQYYFFQAVEFLLPGKFLFIFSAKSTKYPDIEPVQFSVTVKAPASLK
KSSSWTSGGAGAGAGAKVKGGSRSPHGSSTSEDRNGAAAAAAAVAAAVAA
AEMAEKKDKRE
back to top

mRNA from alignment at Ecto-sp9_F_contig8915:3528..4818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8915.17103.1 ID=mRNA_Ecto-sp9_F_contig8915.17103.1|Name=mRNA_Ecto-sp9_F_contig8915.17103.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1291bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8915:3528..4818+ (Ectocarpus species9 EcSCA_722f female)
GTGCAAAAGAGCCAGTACTATTTCTTCCAGGCGGTGGAATTCCTGCTCCC
CGGGAAATTTCTCTTCATTTTCTCGGCCAAGAGCACCAAGTGAGAGAGAC
AAACAAATCAAGGATCCTAGGTGGTGTTCTTGATTCACCGTTTCAATGGG
GTCCCTGATCCGCGGACCACACACGCGTGTCGGGGGGGAACACTTCGGGG
TTCTGCAACGAAACTGGATAGGTCGAAACGTGTTTACCATGGACCAGGGA
TATGGCGATAAAACGGCTGTCCGTTTCGGCGCTTGCATTCCATACATTCA
TGGTGTTTTTCATTTTTTTCTCCACGGATTGTTGGGATTGATCCGCGGGA
CGTACGTGCGCCAGTGGTTACGTGACGCCATCTCTACACCTGTCATCTGA
TTAAACTTCTGACGAGGGTAGCCTGTGTCCCTGTACCAGCGTTGTTTTTT
TCTCCGTCTCTTCTGCTGTTCTGGGGCTGGTTTTATCGCGAAGGGCTTAC
ACCAACAGGACGGTGTTCACAATGAGCATCGTGCATTTCGTGGAACGGCG
GCCTATCATTATGCGTCTTGAGCCCCAAGCAACACCTGCCCTACACAACG
ACTTGTTTTGTCAGGTACCCGGATATCGAGCCTGTGCAATTCTCGGTAAC
TGTCAAGGCCCCGGCGTCCCTCAAGGTGAGGGTCTACCCGAGAGTCGAAA
CTTGCTGCGAAAATTACCACATTGCAACTGCGTTTGTAGTGCCCCTCTGT
TTCGGTTGGTCATCAGGGTGTGGATCGGGGGTAGTGCTTCTGCTCCTTTC
TGCGTACGCTGCATCTTTACGGGGTATGCCGTTGCTGCGTTGCCGTCAAT
CACGGCCGTCGTCTCCCGTGAGGCAAGCTCAACGTTGAGATGTTGTCGAA
GAAAGCTTTGGGCAACTTGAGCCTTGAGATGAGATATTGTCGTGATGAGT
GAGACGTTAGGGGTGGGGTGCGATGGTGGTCACTCGTCCACCGCTTCACG
TTCGTCGCGCAGTGGCCTGACGCGTACGTCGTCCACACTGATTTTCGTGG
TTCGTTAGAACAACAGCCGCACCAGCAATGCCTGCCGTCAACGCTACTAT
TATCGCAGAAGTCCTCGTCGTGGACGTCCGGTGGCGCCGGGGCGGGGGCG
GGGGCCAAGGTTAAGGGCGGCAGCCGGTCCCCCCACGGCAGTAGCACCTC
GGAAGATCGAAACGGCGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCTG
TGGCGGCTGCCGAGATGGCCGAGAAGAAGGACAAGCGGGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8915:3528..4818+

>mRNA_Ecto-sp9_F_contig8915.17103.1 ID=mRNA_Ecto-sp9_F_contig8915.17103.1|Name=mRNA_Ecto-sp9_F_contig8915.17103.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8915:3528..4818+ (Ectocarpus species9 EcSCA_722f female)
GTGCAAAAGAGCCAGTACTATTTCTTCCAGGCGGTGGAATTCCTGCTCCC
CGGGAAATTTCTCTTCATTTTCTCGGCCAAGAGCACCAAGTGCAAAAGAG
CCAGTACTATTTCTTCCAGGCGGTGGAATTCCTGCTCCCCGGGAAATTTC
TCTTCATTTTCTCGGCCAAGAGCACCAAGTACCCGGATATCGAGCCTGTG
CAATTCTCGGTAACTGTCAAGGCCCCGGCGTCCCTCAAGGTACCCGGATA
TCGAGCCTGTGCAATTCTCGGTAACTGTCAAGGCCCCGGCGTCCCTCAAG
AAGTCCTCGTCGTGGACGTCCGGTGGCGCCGGGGCGGGGGCGGGGGCCAA
GGTTAAGGGCGGCAGCCGGTCCCCCCACGGCAGTAGCACCTCGGAAGATC
GAAACGGCGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCTGTGGCGGCT
GCCGAGATGGCCGAGAAGAAGGACAAGCGGGAGAAGTCCTCGTCGTGGAC
GTCCGGTGGCGCCGGGGCGGGGGCGGGGGCCAAGGTTAAGGGCGGCAGCC
GGTCCCCCCACGGCAGTAGCACCTCGGAAGATCGAAACGGCGCGGCGGCG
GCGGCGGCGGCGGTGGCGGCGGCTGTGGCGGCTGCCGAGATGGCCGAGAA
GAAGGACAAGCGGGAG
back to top