mRNA_Ecto-sp9_F_contig8910.17100.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8910.17100.1
Unique NamemRNA_Ecto-sp9_F_contig8910.17100.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8910.17100.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8910contigEcto-sp9_F_contig8910:745..1275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.4788573-CDS-Ecto-sp9_F_contig8910:744..12031622930948.4788573-CDS-Ecto-sp9_F_contig8910:744..1203Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8910 745..1203 +
1692278962.6842854-CDS-Ecto-sp9_F_contig8910:744..12031692278962.6842854-CDS-Ecto-sp9_F_contig8910:744..1203Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8910 745..1203 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.492078-UTR-Ecto-sp9_F_contig8910:1203..12751622930948.492078-UTR-Ecto-sp9_F_contig8910:1203..1275Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8910 1204..1275 +
1692278962.6953776-UTR-Ecto-sp9_F_contig8910:1203..12751692278962.6953776-UTR-Ecto-sp9_F_contig8910:1203..1275Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8910 1204..1275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8910.17100.1prot_Ecto-sp9_F_contig8910.17100.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8910 745..1203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8910.17100.1

>prot_Ecto-sp9_F_contig8910.17100.1 ID=prot_Ecto-sp9_F_contig8910.17100.1|Name=mRNA_Ecto-sp9_F_contig8910.17100.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=153bp
LTLPFLLLARTGVPESGIDRACRENVDILIDIHQSPRNVEVPRKKANSAS
LGTTGIFRVRHVVACWLSPRGGLVLLNQTVHITPSRQETNWGEPRGIRGR
RASEENRFSESGHLSSCVQHACIVRFPLSLIRVSHNNFFVVCCWLVLEHL
LY*
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mRNA from alignment at Ecto-sp9_F_contig8910:745..1275+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8910.17100.1 ID=mRNA_Ecto-sp9_F_contig8910.17100.1|Name=mRNA_Ecto-sp9_F_contig8910.17100.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=531bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8910:745..1275+ (Ectocarpus species9 EcSCA_722f female)
TTAACGCTTCCTTTCCTTCTGTTGGCAAGGACGGGGGTACCCGAGTCGGG
AATCGACAGGGCGTGCCGAGAGAATGTTGATATATTAATCGACATCCACC
AATCTCCTCGGAATGTAGAGGTGCCAAGAAAAAAGGCAAACTCAGCGTCC
CTGGGAACAACGGGAATTTTCCGGGTGAGGCATGTGGTTGCCTGTTGGCT
TTCACCACGCGGAGGCCTTGTATTGCTCAATCAAACTGTGCACATCACGC
CATCACGACAGGAAACTAATTGGGGCGAACCAAGGGGAATCAGGGGGCGA
AGAGCTAGCGAAGAGAACCGGTTTTCCGAATCAGGTCATCTTAGCTCGTG
TGTTCAACATGCCTGTATTGTTCGTTTTCCATTGTCACTGATACGTGTTT
CCCACAACAATTTTTTTGTTGTGTGCTGCTGGTTGGTGCTAGAGCACCTC
CTGTACTAAACACCACCGCTGAGGCGGCGCATCATTGATCTACTTCGCAA
GTAAGGTTGTACACCTGTCACACTCTTGAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8910:745..1275+

>mRNA_Ecto-sp9_F_contig8910.17100.1 ID=mRNA_Ecto-sp9_F_contig8910.17100.1|Name=mRNA_Ecto-sp9_F_contig8910.17100.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8910:745..1275+ (Ectocarpus species9 EcSCA_722f female)
TTAACGCTTCCTTTCCTTCTGTTGGCAAGGACGGGGGTACCCGAGTCGGG
AATCGACAGGGCGTGCCGAGAGAATGTTGATATATTAATCGACATCCACC
AATCTCCTCGGAATGTAGAGGTGCCAAGAAAAAAGGCAAACTCAGCGTCC
CTGGGAACAACGGGAATTTTCCGGGTGAGGCATGTGGTTGCCTGTTGGCT
TTCACCACGCGGAGGCCTTGTATTGCTCAATCAAACTGTGCACATCACGC
CATCACGACAGGAAACTAATTGGGGCGAACCAAGGGGAATCAGGGGGCGA
AGAGCTAGCGAAGAGAACCGGTTTTCCGAATCAGGTCATCTTAGCTCGTG
TGTTCAACATGCCTGTATTGTTCGTTTTCCATTGTCACTGATACGTGTTT
CCCACAACAATTTTTTTGTTGTGTGCTGCTGGTTGGTGCTAGAGCACCTC
CTGTACTAATTAACGCTTCCTTTCCTTCTGTTGGCAAGGACGGGGGTACC
CGAGTCGGGAATCGACAGGGCGTGCCGAGAGAATGTTGATATATTAATCG
ACATCCACCAATCTCCTCGGAATGTAGAGGTGCCAAGAAAAAAGGCAAAC
TCAGCGTCCCTGGGAACAACGGGAATTTTCCGGGTGAGGCATGTGGTTGC
CTGTTGGCTTTCACCACGCGGAGGCCTTGTATTGCTCAATCAAACTGTGC
ACATCACGCCATCACGACAGGAAACTAATTGGGGCGAACCAAGGGGAATC
AGGGGGCGAAGAGCTAGCGAAGAGAACCGGTTTTCCGAATCAGGTCATCT
TAGCTCGTGTGTTCAACATGCCTGTATTGTTCGTTTTCCATTGTCACTGA
TACGTGTTTCCCACAACAATTTTTTTGTTGTGTGCTGCTGGTTGGTGCTA
GAGCACCTCCTGTACTAA
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