mRNA_Ecto-sp9_F_contig8910.17099.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8910.17099.1
Unique NamemRNA_Ecto-sp9_F_contig8910.17099.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8910.17099.1 vs.
Match: Beta (1,3 exoglucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK84_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 9.980e-41
Identity = 70/81 (86.42%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 AVSRGDLFTCLSEADSGGLLRGRGNGLCVPPCTGDGPQTCGGDAAFDVYKIVPRGDDENADGIALGNSPTTTDTATTSTTT 243
            AVSRGDLFTCLSEADS G L GRGNG+C  PCTGD  QTCGG AAFD YKIVPRGDDENADGIALGNSPTTTDTATTS TT
Sbjct:  125 AVSRGDLFTCLSEADSAGFLGGRGNGVCNSPCTGDASQTCGGHAAFDAYKIVPRGDDENADGIALGNSPTTTDTATTSPTT 205
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BLAST of mRNA_Ecto-sp9_F_contig8910.17099.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z3_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 6.950e-39
Identity = 67/80 (83.75%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    1 AVSRGDLFTCLSEADSGGLLRGRGNGLCVPPCTGDGPQTCGGDAAFDVYKIVPRGDDENADGIALGNSPTTTDTATTSTT 240
            AVSRGDLFTCLSE DSGG LRGRGNG+C  PCTGD  QTCGG AAFD YKIV RGDDENADGIALG+SP+TTDTA TSTT
Sbjct:  133 AVSRGDLFTCLSEGDSGGFLRGRGNGVCNSPCTGDASQTCGGHAAFDAYKIVSRGDDENADGIALGDSPSTTDTAATSTT 212
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BLAST of mRNA_Ecto-sp9_F_contig8910.17099.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL41_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.840e-10
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 AVSRGDLFTCLSEADSGGLLRGRGNGLCVPPCTGDGPQTCGGDAAFDVYKI-VPRGDDEN 177
            AV+RGDL TC +EAD+G +   R  G+C  PCTGD  Q CGG  +FDVY++ +  G D N
Sbjct:  139 AVTRGDLCTCFTEADTG-IFDDRKGGVCDAPCTGDSSQPCGGVDSFDVYQLSLTEGHDRN 197
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BLAST of mRNA_Ecto-sp9_F_contig8910.17099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK89_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 9.020e-9
Identity = 27/35 (77.14%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 AVSRGDLFTCLSEADSGGLLRGRGNGLCVPPCTGD 105
            AVSR DLFT LSEADS G L GRGNG+C  PCTGD
Sbjct:   62 AVSRCDLFTSLSEADSAGFLGGRGNGVCNSPCTGD 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8910.17099.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Beta9.980e-4186.421,3 exoglucanase n=1 Tax=Ectocarpus siliculosus Ta... [more]
WSC6.950e-3983.75domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
WSC9.840e-1051.67domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized9.020e-977.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8910contigEcto-sp9_F_contig8910:734..2150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue2e-08
Seed eggNOG ortholog2880.D8LKF8
KEGG koko:K20290
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCarbohydrate-binding WSC
Ec32 orthologEc-16_002480.1
Exons2
Model size275
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.529845-CDS-Ecto-sp9_F_contig8910:733..7621622930948.529845-CDS-Ecto-sp9_F_contig8910:733..762Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8910 734..762 -
1692278962.7168248-CDS-Ecto-sp9_F_contig8910:733..7621692278962.7168248-CDS-Ecto-sp9_F_contig8910:733..762Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8910 734..762 -
1622930948.5446286-CDS-Ecto-sp9_F_contig8910:1906..21501622930948.5446286-CDS-Ecto-sp9_F_contig8910:1906..2150Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8910 1907..2150 -
1692278962.7303605-CDS-Ecto-sp9_F_contig8910:1906..21501692278962.7303605-CDS-Ecto-sp9_F_contig8910:1906..2150Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8910 1907..2150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8910.17099.1prot_Ecto-sp9_F_contig8910.17099.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8910 734..2150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8910.17099.1

>prot_Ecto-sp9_F_contig8910.17099.1 ID=prot_Ecto-sp9_F_contig8910.17099.1|Name=mRNA_Ecto-sp9_F_contig8910.17099.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=91bp
AVSRGDLFTCLSEADSGGLLRGRGNGLCVPPCTGDGPQTCGGDAAFDVYK
IVPRGDDENADGIALGNSPTTTDTATTSTTTEGKEALNDAP
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mRNA from alignment at Ecto-sp9_F_contig8910:734..2150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8910.17099.1 ID=mRNA_Ecto-sp9_F_contig8910.17099.1|Name=mRNA_Ecto-sp9_F_contig8910.17099.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1417bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8910:734..2150- (Ectocarpus species9 EcSCA_722f female)
GCGGTCAGCAGAGGCGACCTGTTCACCTGCTTGTCGGAAGCAGACTCTGG
CGGTTTACTCCGCGGCAGGGGTAATGGCTTGTGCGTTCCCCCCTGCACCG
GCGACGGCCCGCAAACTTGCGGAGGAGACGCCGCGTTTGACGTGTACAAG
ATAGTCCCCAGGGGAGACGACGAGAACGCCGACGGCATCGCCTTGGGCAA
CTCACCTACCACCACCGATACCGCCACAACCTCCACGACTACCGGTAAGA
TGAGAGATGCCGGGGATTTACTCTCACTGTACTGTAGTTGATTCATTGTC
TGTTGTGTGTGTATGCGTGGGCAAAGGCCGTCGAAACGGTCTGTACAAAG
CTGCCAGCATAGTGCGTAGAGCACGGGGAAGGTATGCATACCATCACGTG
GTGCTTCTTGTCCCTTCCCTTTTCTTCCTTGAACTACATGTGTTGTCGGT
TGGCAACCGCACATTCAGGGTAAAGCCCCTCGTGTACAAATGCATCAGTC
TTGCTAAGGACGTTGAAGATCTCGAGGCCAACACAAACCACGGCCGATGT
TTCCTGCTGTAAAAATGTTCGCTGCTTCACGGTACGTTTTTTCTCGATTT
CATCCTCCGACACGCTGCACTGAGGTTTAGGCGTGGACGTGCTTTTATCC
TTCTTGCCTAATGTACGTGTCCTTTGGATGTTGCTTGTCGGAGACCAACC
AAGTTGGGAGAAGCGATTGGGACCTGGGGTCTAAGTTTCCCGACTATGGG
CAGCCCCTTTGTCTCTGTTTCTCGCAACGTTGTGAGGTTATCCGCTCCAT
CTTTTTCTTCTCAAAGTTCCGGTTTTTATGTTCACGCACTGCAGTTCCAG
TATCATTTGACGTGTCTGACGCCTGCCTCAAGAGTGTGACAGGTGTACAA
CCTTACTTGCGAAGTAGATCAATGATGCGCCGCCTCAGCGGTGGTGTTTA
GTACAGGAGGTGCTCTAGCACCAACCAGCAGCACACAACAAAAAAATTGT
TGTGGGAAACACGTATCAGTGACAATGGAAAACGAACAATACAGGCATGT
TGAACACACGAGCTAAGATGACCTGATTCGGAAAACCGGTTCTCTTCGCT
AGCTCTTCGCCCCCTGATTCCCCTTGGTTCGCCCCAATTAGTTTCCTGTC
GTGATGGCGTGATGTGCACAGTTTGATTGAGCAATACAAGGCCTCCGCGT
GGTGAAAGCCAACAGGCAACCACATGCCTCACCCGGAAAATTCCCGTTGT
TCCCAGGGACGCTGAGTTTGCCTTTTTTCTTGGCACCTCTACATTCCGAG
GAGATTGGTGGATGTCGATTAATATATCAACATTCTCTCGGCACGCCCTG
TCGATTCCCGACTCGGGTACCCCCGTCCTTGCCAACAGAAGGAAAGGAAG
CGTTAAACGATGCACCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8910:734..2150-

>mRNA_Ecto-sp9_F_contig8910.17099.1 ID=mRNA_Ecto-sp9_F_contig8910.17099.1|Name=mRNA_Ecto-sp9_F_contig8910.17099.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8910:734..2150- (Ectocarpus species9 EcSCA_722f female)
GCGGTCAGCAGAGGCGACCTGTTCACCTGCTTGTCGGAAGCAGACTCTGG
CGGTTTACTCCGCGGCAGGGGTAATGGCTTGTGCGTTCCCCCCTGCACCG
GCGACGGCCCGCAAACTTGCGGAGGAGACGCCGCGTTTGACGTGTACAAG
ATAGTCCCCAGGGGAGACGACGAGAACGCCGACGGCATCGCCTTGGGCAA
CTCACCTACCACCACCGATACCGCCACAACCTCCACGACTACCGGCGGTC
AGCAGAGGCGACCTGTTCACCTGCTTGTCGGAAGCAGACTCTGGCGGTTT
ACTCCGCGGCAGGGGTAATGGCTTGTGCGTTCCCCCCTGCACCGGCGACG
GCCCGCAAACTTGCGGAGGAGACGCCGCGTTTGACGTGTACAAGATAGTC
CCCAGGGGAGACGACGAGAACGCCGACGGCATCGCCTTGGGCAACTCACC
TACCACCACCGATACCGCCACAACCTCCACGACTACCGAAGGAAAGGAAG
CGTTAAACGATGCACCCAAGGAAAGGAAGCGTTAAACGATGCACCC
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