mRNA_Ecto-sp9_F_contig8908.17095.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8908.17095.1
Unique NamemRNA_Ecto-sp9_F_contig8908.17095.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8908.17095.1 vs.
Match: MULE (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.660e-12
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  469 GGGDAGGIAKKGRAFNVLGTPDLTWDGCFGELIGELKAAGHATVQYRRKNRTADESRHYYCEIVCAH 669
            G G+ G IAK GR+F+VLG+P  TWD  F   +GEL+A G+ T+   RK +  D+SR ++C++ CAH
Sbjct:   52 GRGETGRIAKAGRSFDVLGSPQETWDAVFETFLGELRAEGYDTLLINRKKKMTDKSRDHHCDVSCAH 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8908.17095.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
MULE3.660e-1247.76domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8908contigEcto-sp9_F_contig8908:4332..5460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size674
Cds size672
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8908.17095.1prot_Ecto-sp9_F_contig8908.17095.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8908 4332..5458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.7790682-CDS-Ecto-sp9_F_contig8908:4331..46191622930947.7790682-CDS-Ecto-sp9_F_contig8908:4331..4619Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 4332..4619 +
1692278962.2980077-CDS-Ecto-sp9_F_contig8908:4331..46191692278962.2980077-CDS-Ecto-sp9_F_contig8908:4331..4619Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 4332..4619 +
1622930947.7994022-CDS-Ecto-sp9_F_contig8908:4757..48831622930947.7994022-CDS-Ecto-sp9_F_contig8908:4757..4883Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 4758..4883 +
1692278962.3261065-CDS-Ecto-sp9_F_contig8908:4757..48831692278962.3261065-CDS-Ecto-sp9_F_contig8908:4757..4883Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 4758..4883 +
1622930947.8165836-CDS-Ecto-sp9_F_contig8908:5042..52491622930947.8165836-CDS-Ecto-sp9_F_contig8908:5042..5249Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 5043..5249 +
1692278962.3436038-CDS-Ecto-sp9_F_contig8908:5042..52491692278962.3436038-CDS-Ecto-sp9_F_contig8908:5042..5249Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 5043..5249 +
1622930947.83671-CDS-Ecto-sp9_F_contig8908:5407..54581622930947.83671-CDS-Ecto-sp9_F_contig8908:5407..5458Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 5408..5458 +
1692278962.35441-CDS-Ecto-sp9_F_contig8908:5407..54581692278962.35441-CDS-Ecto-sp9_F_contig8908:5407..5458Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 5408..5458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8908.17095.1

>prot_Ecto-sp9_F_contig8908.17095.1 ID=prot_Ecto-sp9_F_contig8908.17095.1|Name=mRNA_Ecto-sp9_F_contig8908.17095.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=224bp
KDIVPGTRLHTSDRAEDGEWGTVFRSNMDVDCEIVSYEVFMDTAKNTTTM
LADDVKADVAHARGMKADQDPNHSNGVNSSEEDDSDGGGNDGKVKKERGR
GRSRGKKGSGLEKPDTKSSDSSEEDDSDGDGNDGKVKKEPGVGGSTGMKD
GTQKIWGGGDAGGIAKKGRAFNVLGTPDLTWDGCFGELIGELKAAGHATV
QYRRKNRTADESRHYYCEIVCAHG
back to top

mRNA from alignment at Ecto-sp9_F_contig8908:4332..5460+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8908.17095.1 ID=mRNA_Ecto-sp9_F_contig8908.17095.1|Name=mRNA_Ecto-sp9_F_contig8908.17095.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1129bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8908:4332..5460+ (Ectocarpus species9 EcSCA_722f female)
AAGGACATCGTGCCCGGTACGCGACTGCACACGAGTGATCGGGCCGAGGA
CGGGGAGTGGGGAACAGTGTTCAGGTCGAACATGGACGTCGATTGTGAAA
TCGTCTCGTACGAAGTGTTCATGGACACCGCCAAGAACACTACCACGATG
CTGGCGGACGATGTGAAGGCAGATGTCGCGCATGCCAGGGGAATGAAGGC
GGATCAGGACCCGAATCATTCGAACGGGGTAAATTCCAGCGAGGAGGACG
ATTCCGATGGCGGCGGCAACGATGGCAAGGTGAAGAAGGTGAGACCTGTG
GGCCCCGGCAGACTACCTTTCACCCAGGATGGGTGCACCTGCAGCAGTCG
TCCGTTTGTGCTTTTGACTTGTTCGAGAGTCTTTACTCCCATGGTATTTT
TGTTGTTCGTTGTGTGGCGAAAGCAGGAACGGGGTCGTGGCAGGAGCAGG
GGCAAGAAGGGGTCTGGGCTTGAGAAGCCGGACACGAAGAGCAGCGACTC
CAGCGAGGAGGATGATTCCGATGGCGACGGCAACGATGGCAAGGTGAAGA
AGGTGAGACCTTTGGGCGTCGGGATGTCGGGATGGGTCGAATAACAGCTG
CAATCGGGCAACGCGTCACGACCCGCCACGTTCTGCCGATCCCCTGCCAA
CATGTTGGGGGCCGGTCTGTGATTTCATTTCCGGGGTGCTGTTTATGTAC
GATGTAAGCAGGAGCCGGGTGTCGGCGGGAGCACGGGCATGAAGGACGGG
ACGCAGAAGATTTGGGGAGGTGGAGATGCCGGAGGAATAGCGAAGAAAGG
GCGCGCTTTCAATGTTCTCGGCACACCTGACCTAACGTGGGACGGTTGCT
TCGGTGAACTTATTGGGGAGCTCAAAGCCGCTGGGCATGCCACGGTTCAG
TATAGAAGAAAGAACAGGGTGAGTCCAGACGTTAGAGTCGGGAAAAGGTT
TCACGATCCTTGCACGTTTCGAATACAAAGGTTTTTTGGCCTAGGCTATT
GCTACCGAAACGTGTCATCGGTTGGTTGACGACTCTTCTGTCTAATGTTT
CTCCCTTCCCGTTCGTACATCCGCAGACGGCGGACGAGAGCAGACACTAC
TATTGCGAGATCGTTTGCGCGCACGGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8908:4332..5460+

>mRNA_Ecto-sp9_F_contig8908.17095.1 ID=mRNA_Ecto-sp9_F_contig8908.17095.1|Name=mRNA_Ecto-sp9_F_contig8908.17095.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1344bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8908:4332..5460+ (Ectocarpus species9 EcSCA_722f female)
AAGGACATCGTGCCCGGTACGCGACTGCACACGAGTGATCGGGCCGAGGA
CGGGGAGTGGGGAACAGTGTTCAGGTCGAACATGGACGTCGATTGTGAAA
TCGTCTCGTACGAAGTGTTCATGGACACCGCCAAGAACACTACCACGATG
CTGGCGGACGATGTGAAGGCAGATGTCGCGCATGCCAGGGGAATGAAGGC
GGATCAGGACCCGAATCATTCGAACGGGGTAAATTCCAGCGAGGAGGACG
ATTCCGATGGCGGCGGCAACGATGGCAAGGTGAAGAAGAAGGACATCGTG
CCCGGTACGCGACTGCACACGAGTGATCGGGCCGAGGACGGGGAGTGGGG
AACAGTGTTCAGGTCGAACATGGACGTCGATTGTGAAATCGTCTCGTACG
AAGTGTTCATGGACACCGCCAAGAACACTACCACGATGCTGGCGGACGAT
GTGAAGGCAGATGTCGCGCATGCCAGGGGAATGAAGGCGGATCAGGACCC
GAATCATTCGAACGGGGTAAATTCCAGCGAGGAGGACGATTCCGATGGCG
GCGGCAACGATGGCAAGGTGAAGAAGGAACGGGGTCGTGGCAGGAGCAGG
GGCAAGAAGGGGTCTGGGCTTGAGAAGCCGGACACGAAGAGCAGCGACTC
CAGCGAGGAGGATGATTCCGATGGCGACGGCAACGATGGCAAGGTGAAGA
AGGAACGGGGTCGTGGCAGGAGCAGGGGCAAGAAGGGGTCTGGGCTTGAG
AAGCCGGACACGAAGAGCAGCGACTCCAGCGAGGAGGATGATTCCGATGG
CGACGGCAACGATGGCAAGGTGAAGAAGGAGCCGGGTGTCGGCGGGAGCA
CGGGCATGAAGGACGGGACGCAGAAGATTTGGGGAGGTGGAGATGCCGGA
GGAATAGCGAAGAAAGGGCGCGCTTTCAATGTTCTCGGCACACCTGACCT
AACGTGGGACGGTTGCTTCGGTGAACTTATTGGGGAGCTCAAAGCCGCTG
GGCATGCCACGGTTCAGTATAGAAGAAAGAACAGGGAGCCGGGTGTCGGC
GGGAGCACGGGCATGAAGGACGGGACGCAGAAGATTTGGGGAGGTGGAGA
TGCCGGAGGAATAGCGAAGAAAGGGCGCGCTTTCAATGTTCTCGGCACAC
CTGACCTAACGTGGGACGGTTGCTTCGGTGAACTTATTGGGGAGCTCAAA
GCCGCTGGGCATGCCACGGTTCAGTATAGAAGAAAGAACAGGACGGCGGA
CGAGAGCAGACACTACTATTGCGAGATCGTTTGCGCGCACGGGACGGCGG
ACGAGAGCAGACACTACTATTGCGAGATCGTTTGCGCGCACGGG
back to top