mRNA_Ecto-sp9_F_contig8908.17094.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8908.17094.1
Unique NamemRNA_Ecto-sp9_F_contig8908.17094.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8908.17094.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8908contigEcto-sp9_F_contig8908:2925..4001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size275
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8908.17094.1prot_Ecto-sp9_F_contig8908.17094.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8908 2925..4001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.681418-CDS-Ecto-sp9_F_contig8908:2924..29631622930947.681418-CDS-Ecto-sp9_F_contig8908:2924..2963Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 2925..2963 +
1692278962.2495687-CDS-Ecto-sp9_F_contig8908:2924..29631692278962.2495687-CDS-Ecto-sp9_F_contig8908:2924..2963Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 2925..2963 +
1622930947.697505-CDS-Ecto-sp9_F_contig8908:3164..32241622930947.697505-CDS-Ecto-sp9_F_contig8908:3164..3224Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 3165..3224 +
1692278962.2668424-CDS-Ecto-sp9_F_contig8908:3164..32241692278962.2668424-CDS-Ecto-sp9_F_contig8908:3164..3224Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 3165..3224 +
1622930947.7132473-CDS-Ecto-sp9_F_contig8908:3662..37251622930947.7132473-CDS-Ecto-sp9_F_contig8908:3662..3725Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 3663..3725 +
1692278962.2762206-CDS-Ecto-sp9_F_contig8908:3662..37251692278962.2762206-CDS-Ecto-sp9_F_contig8908:3662..3725Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 3663..3725 +
1622930947.7286-CDS-Ecto-sp9_F_contig8908:3890..40011622930947.7286-CDS-Ecto-sp9_F_contig8908:3890..4001Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 3891..4001 +
1692278962.2850585-CDS-Ecto-sp9_F_contig8908:3890..40011692278962.2850585-CDS-Ecto-sp9_F_contig8908:3890..4001Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 3891..4001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8908.17094.1

>prot_Ecto-sp9_F_contig8908.17094.1 ID=prot_Ecto-sp9_F_contig8908.17094.1|Name=mRNA_Ecto-sp9_F_contig8908.17094.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=91bp
EHQQSLLKKELDKARSALKEEEDALALLKGTYFVPLGSAKAAVQAEEDAR
QASMNDEYGERKRNEEAAKKARERNAGKGGDGLSAGSSKQA
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mRNA from alignment at Ecto-sp9_F_contig8908:2925..4001+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8908.17094.1 ID=mRNA_Ecto-sp9_F_contig8908.17094.1|Name=mRNA_Ecto-sp9_F_contig8908.17094.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1077bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8908:2925..4001+ (Ectocarpus species9 EcSCA_722f female)
GAACACCAACAGTCTCTTCTCAAGAAGGAGCTGGACAAGGTATAACACCT
CCGTACGATAGAGAGAGGGGAGTCTCCAGTTGTTTAGCTTGAGCTTTGTG
TGGTGTTGTAGTCGGTTTTGTGCTTGGCGGTGTGCATTGCAAGTTTCCGG
CCCCGTCGTACAGTCGTTCCTTCGTGCACGTCACTCCGTCGCCTATCGTC
TGCTGGTCTTCCGAACGTTCGTCTCTTCGCACACGTACAGGCTCGTTCCG
CTCTCAAGGAGGAGGAGGATGCTCTGGCTCTTCTCAAGGGAACCTACTTC
GTGAGTGTCTACATTTCGGCCACAGGATTCAGTACCCGTCCACATTCGTT
GTTTAACATGCCGGGAGTTCGGTTTGTGTACCGTTTAGCGCTTCTGGATT
GTTTTATCGTTGTTGTTTTCGTGTTTTTTTTGTTCTTTTTTCGTTGACGT
TCGTTCCATCTCGCCGTTGTGATTGCAGTTTCGTCTGTTTTGTGTTGATG
TGATGCTTGTCGGTGTTGTATGGCGTCACGCTCAGCCTCCGAGTGCTGCT
TACATGTTGCATCTATCGCACTTGGTCGTTCAAGTTGGGGTTCTTGCCGA
ATTTCCCTCTGCTTTCGTGTTGGGCGATACTGTACTCACGAGCTTTTGGA
GGTGTGATCACTGACCTCCCCCCGGGTTAGGGTGAGTTTGCCCTACACAT
GAACATGACCGACGGCAACATGGTGCAACCGCCTGCAGGTCCCCTTAGGT
TCTGCGAAGGCAGCAGTTCAGGCCGAAGAGGATGCACGTCAAGCGAGCAT
GGTGAGACATCATGGTTGGGGCGTTGATTGTACGAGCGCATCTTTTGTTT
TGTACAGCAAGCCTACGACAGATGGATTGTCGCCCATCATAGTACTTGCG
CCGTTGGTGTTTTAGGCGTCCGCGTATGTGGCCGTGTGTCACCTCCCCTC
CCACGGTTGTTTGCAGAACGACGAGTATGGCGAACGGAAGCGGAACGAGG
AAGCTGCGAAAAAGGCACGTGAAAGGAACGCAGGCAAGGGTGGCGACGGT
TTGTCCGCGGGTTCCAGTAAGCAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8908:2925..4001+

>mRNA_Ecto-sp9_F_contig8908.17094.1 ID=mRNA_Ecto-sp9_F_contig8908.17094.1|Name=mRNA_Ecto-sp9_F_contig8908.17094.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8908:2925..4001+ (Ectocarpus species9 EcSCA_722f female)
GAACACCAACAGTCTCTTCTCAAGAAGGAGCTGGACAAGGAACACCAACA
GTCTCTTCTCAAGAAGGAGCTGGACAAGGCTCGTTCCGCTCTCAAGGAGG
AGGAGGATGCTCTGGCTCTTCTCAAGGGAACCTACTTCGCTCGTTCCGCT
CTCAAGGAGGAGGAGGATGCTCTGGCTCTTCTCAAGGGAACCTACTTCGT
CCCCTTAGGTTCTGCGAAGGCAGCAGTTCAGGCCGAAGAGGATGCACGTC
AAGCGAGCATGGTCCCCTTAGGTTCTGCGAAGGCAGCAGTTCAGGCCGAA
GAGGATGCACGTCAAGCGAGCATGAACGACGAGTATGGCGAACGGAAGCG
GAACGAGGAAGCTGCGAAAAAGGCACGTGAAAGGAACGCAGGCAAGGGTG
GCGACGGTTTGTCCGCGGGTTCCAGTAAGCAGGCGAACGACGAGTATGGC
GAACGGAAGCGGAACGAGGAAGCTGCGAAAAAGGCACGTGAAAGGAACGC
AGGCAAGGGTGGCGACGGTTTGTCCGCGGGTTCCAGTAAGCAGGCG
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