mRNA_Ecto-sp9_F_contig8908.17093.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH9_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.130e-44 Identity = 79/160 (49.38%), Postives = 105/160 (65.62%), Query Frame = 2
Query: 260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
I+LE LRH+E Y+S QE +F W NY ++ D+L + W E + R GSR+CARL+++AQL A +R+WLQQFV +LATVIQ PLR F+PY S+S +YG W TLF+PL + PR VH+ T+ SS EYR+DF AAGW ++ PEL
Sbjct: 79 IVLEGLRHIEAYVSVQEGFFMDWSNYGDEVRDELP-KSGWKIEPGLDNKMRVGSRQCARLMFIAQLRHTAQNRRWLQQFVFAILATVIQTPLRVFLPYRSLSDAYGATWDHTLFRPLYSSGPPRPAVHVVSTIASSAEYRTDFEDAAGWRAQHMPHQPEL 237
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K991_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.280e-41 Identity = 78/160 (48.75%), Postives = 105/160 (65.62%), Query Frame = 2
Query: 260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
I+LE LRH+E Y+S QED+F NY ++ D+L + W E + R GSR+CARL+++AQL A +R+WLQQFV P+LATVIQ PLR F+P S+S +YG W TLF+PL + PR VH+ T+ SS EYR +F AAGW ++ +PEL
Sbjct: 149 IVLEGLRHIEAYVSVQEDFFMDGSNYGDEVRDELP-KSGWKIEPDLDNKMRVGSRQCARLMFIAQLRHTAQNRRWLQQFVFPILATVIQTPLRVFLPSRSLSDAYGATWDHTLFRPLYSSGPPRPAVHVVSTIASSAEYRPNFEDAAGWRAQHMPHLPEL 307
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY1_9PHAE) HSP 1 Score: 147 bits (372), Expect = 7.880e-39 Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 2
Query: 260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
I++E LR++EVYL RQ +++ W+NYV ++ L W + + +R SR CARL+++ L+ IA D+ +LQQFVLPMLATVI+ P+R FVP+ S+ GG W+ TLFQPL+ D R+TVH+ MT VSS +YR FS A + + NGG I EL
Sbjct: 76 IVVEGLRNIEVYLDRQYEFYGTWYNYVDQVVFDLK-RCGWVVDAMPENRWRMASRDCARLVFLGCLHHIARDKVFLQQFVLPMLATVIRGPVRVFVPFTSVQNVNGGEWQWTLFQPLVAPDPGRQTVHVVMTYVSSADYRPQFSDAHEYKRLNGGRIREL 234
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQL8_9PHAE) HSP 1 Score: 145 bits (365), Expect = 9.570e-39 Identity = 75/160 (46.88%), Postives = 106/160 (66.25%), Query Frame = 2
Query: 260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
I++E LR++EVYL RQ +++ W+NYV ++ L W + + +R SR CARL+++ L+ IA D+ +LQQFVLPMLATVI+ P+R FVP+ S+ GG W+ TLFQPL+ D R+TVH+ MT VSS +YR FS A + + +GG I EL
Sbjct: 26 IVVEGLRNIEVYLDRQYEFYGTWYNYVDQVVFDLK-RCGWVVDAMPENRWRMASRDCARLVFLGCLHQIARDKVFLQQFVLPMLATVIRGPVRVFVPFTSVQNVNGGEWQWTLFQPLVAPDPGRQTVHVVMTYVSSADYRPQFSDAHEYKRLSGGRIREL 184
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.050e-36 Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 2
Query: 260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
I++E LR++EVYL RQ +++ W+NYV ++ L W + + +R SR CARL+++ L+ IA D+ +LQQFVLPMLATVI+ P+R FVP+ S+ GG W+ TLFQPL+ D R+TVH+ MT VSS +YR FS A + + NGG I EL
Sbjct: 145 IVVEGLRNIEVYLDRQYEFYGTWYNYVDQVVFDLK-RCGWVVDAMPENRWRMASRDCARLVFLGCLHHIARDKVFLQQFVLPMLATVIRGPVRVFVPFISVQNVNGGEWQWTLFQPLVAPDPGRQTVHVVMTYVSSADYRPQFSDAHEYKRLNGGRIREL 303
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX9_ECTSI) HSP 1 Score: 130 bits (327), Expect = 7.190e-31 Identity = 68/161 (42.24%), Postives = 101/161 (62.73%), Query Frame = 2
Query: 260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKH-WSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
++L L++ME++L Q+D+F AW+NY SD+ ++L EK+ W + + GS CA L+++AQL IA WL QFV P+LATV+Q PLR F+P +++ + GG WK TLF P +T R T+H+AMT+ S Y F +A G+L+ +PEL
Sbjct: 122 VVLYGLKYMEIFLLEQDDHFGAWYNYTSDVRERL--EKNGWHVVPDVDNNWHVGSSNCAWLMFLAQLRSIAKPGAWLHQFVFPILATVVQSPLRLFLPLNTLNNAQGGPWKHTLFLPAWETGR-RPTLHVAMTMGYSSSYLPPFDNATGYLEYVENQLPEL 279
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: SWIM-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE) HSP 1 Score: 126 bits (316), Expect = 2.410e-29 Identity = 65/160 (40.62%), Postives = 101/160 (63.12%), Query Frame = 2
Query: 260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
++L L++ME++L Q+ +F AW+NY +D+ ++L EK+ H + + GS CARL+++AQL A WLQQF P+LATV+Q PLR F+P+ + + + GG+WK +FQP +T + R T+H+AMT S Y F +A G+L+ +PEL
Sbjct: 142 VVLYGLKYMELFLLEQDYHFGAWYNYTTDVRERL--EKNGWHVVHVDNNWHVGSSNCARLMFLAQLRSKAKPGAWLQQFAFPILATVVQSPLRVFLPFNAFTNAQGGSWKH-IFQPAWET-ARRSTLHVAMTTGYSSSYHPPFDNATGYLEYVENQLPEL 297
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD20_9PHAE) HSP 1 Score: 122 bits (307), Expect = 3.270e-28 Identity = 71/176 (40.34%), Postives = 101/176 (57.39%), Query Frame = 2
Query: 260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGG-------------AWKRTLFQPLIKTDSPRKT---VHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
+ LE +RHME YLS QED+ W Y +++ + L + W+ E + R GSR C+RL++VAQL +A + WLQQF P+LA VIQ PLR FVP+ S G ++ T P + T P +T VH+ MT++SS +YRS+F+ A GW ++GG +PEL
Sbjct: 79 VTLEGMRHMEAYLSCQEDFSMCWSIYGNELREGLP-KLGWTIEADAHNKHRLGSRNCSRLMFVAQLKHVAGNCNWLQQFAFPLLAIVIQVPLRGFVPWLSRLLLPDGPLYCRPQPYAHIRSFVDTHPVPTVFTVRPGRTHPAVHVVMTIMSSADYRSNFNDAPGWRDRSGGVLPEL 253
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY21_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.160e-27 Identity = 60/144 (41.67%), Postives = 90/144 (62.50%), Query Frame = 2
Query: 308 EDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
+D+F AW+NY SD+ ++L + W + + GS CARL+++AQL IA R WLQQFV+P+LATV+ PLR F+P+ + + + GG WK T F P +T + R T+H+AMT+ + Y F +A G+L+ +PEL
Sbjct: 138 DDHFGAWYNYTSDVRERL-EKNEWHVVPDVDNNWHVGSSNCARLMFLAQLRSIAKPRAWLQQFVVPILATVVHSPLRVFLPFNTFNNAQGGPWKHTHFLPAWET-ARRSTLHVAMTMGYNSSYHPPFDNATGYLEYVENQLPEL 279
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG76_9PHAE) HSP 1 Score: 115 bits (288), Expect = 1.090e-25 Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 2
Query: 398 VDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
V+ +R SR CARL+++ L+ IA D+ +LQQFVLPMLATVI+ P+R FVP+ S+ GG W+ TLFQPL+ D R+TVH+ MT VSS +YR S + + NGG I EL
Sbjct: 3 VNRWRMASRDCARLVFLGCLHHIARDKVFLQQFVLPMLATVIRGPVRVFVPFTSVQNVNGGEWQWTLFQPLVAPDPGRQTVHVVMTNVSSADYRPQCSDTHEYKRLNGGRIREL 116 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8908.17093.1 >prot_Ecto-sp9_F_contig8908.17093.1 ID=prot_Ecto-sp9_F_contig8908.17093.1|Name=mRNA_Ecto-sp9_F_contig8908.17093.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=153bp MEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCAback to top mRNA from alignment at Ecto-sp9_F_contig8908:114..2786+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8908.17093.1 ID=mRNA_Ecto-sp9_F_contig8908.17093.1|Name=mRNA_Ecto-sp9_F_contig8908.17093.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2673bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8908:114..2786+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8908:114..2786+ >mRNA_Ecto-sp9_F_contig8908.17093.1 ID=mRNA_Ecto-sp9_F_contig8908.17093.1|Name=mRNA_Ecto-sp9_F_contig8908.17093.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8908:114..2786+ (Ectocarpus species9 EcSCA_722f female)back to top |