mRNA_Ecto-sp9_F_contig8908.17093.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8908.17093.1
Unique NamemRNA_Ecto-sp9_F_contig8908.17093.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH9_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.130e-44
Identity = 79/160 (49.38%), Postives = 105/160 (65.62%), Query Frame = 2
Query:  260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
            I+LE LRH+E Y+S QE +F  W NY  ++ D+L  +  W  E    +  R GSR+CARL+++AQL   A +R+WLQQFV  +LATVIQ PLR F+PY S+S +YG  W  TLF+PL  +  PR  VH+  T+ SS EYR+DF  AAGW  ++    PEL
Sbjct:   79 IVLEGLRHIEAYVSVQEGFFMDWSNYGDEVRDELP-KSGWKIEPGLDNKMRVGSRQCARLMFIAQLRHTAQNRRWLQQFVFAILATVIQTPLRVFLPYRSLSDAYGATWDHTLFRPLYSSGPPRPAVHVVSTIASSAEYRTDFEDAAGWRAQHMPHQPEL 237          
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K991_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.280e-41
Identity = 78/160 (48.75%), Postives = 105/160 (65.62%), Query Frame = 2
Query:  260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
            I+LE LRH+E Y+S QED+F    NY  ++ D+L  +  W  E    +  R GSR+CARL+++AQL   A +R+WLQQFV P+LATVIQ PLR F+P  S+S +YG  W  TLF+PL  +  PR  VH+  T+ SS EYR +F  AAGW  ++   +PEL
Sbjct:  149 IVLEGLRHIEAYVSVQEDFFMDGSNYGDEVRDELP-KSGWKIEPDLDNKMRVGSRQCARLMFIAQLRHTAQNRRWLQQFVFPILATVIQTPLRVFLPSRSLSDAYGATWDHTLFRPLYSSGPPRPAVHVVSTIASSAEYRPNFEDAAGWRAQHMPHLPEL 307          
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY1_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 7.880e-39
Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 2
Query:  260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
            I++E LR++EVYL RQ +++  W+NYV  ++  L     W  +    + +R  SR CARL+++  L+ IA D+ +LQQFVLPMLATVI+ P+R FVP+ S+    GG W+ TLFQPL+  D  R+TVH+ MT VSS +YR  FS A  + + NGG I EL
Sbjct:   76 IVVEGLRNIEVYLDRQYEFYGTWYNYVDQVVFDLK-RCGWVVDAMPENRWRMASRDCARLVFLGCLHHIARDKVFLQQFVLPMLATVIRGPVRVFVPFTSVQNVNGGEWQWTLFQPLVAPDPGRQTVHVVMTYVSSADYRPQFSDAHEYKRLNGGRIREL 234          
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQL8_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 9.570e-39
Identity = 75/160 (46.88%), Postives = 106/160 (66.25%), Query Frame = 2
Query:  260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
            I++E LR++EVYL RQ +++  W+NYV  ++  L     W  +    + +R  SR CARL+++  L+ IA D+ +LQQFVLPMLATVI+ P+R FVP+ S+    GG W+ TLFQPL+  D  R+TVH+ MT VSS +YR  FS A  + + +GG I EL
Sbjct:   26 IVVEGLRNIEVYLDRQYEFYGTWYNYVDQVVFDLK-RCGWVVDAMPENRWRMASRDCARLVFLGCLHQIARDKVFLQQFVLPMLATVIRGPVRVFVPFTSVQNVNGGEWQWTLFQPLVAPDPGRQTVHVVMTYVSSADYRPQFSDAHEYKRLSGGRIREL 184          
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.050e-36
Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 2
Query:  260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
            I++E LR++EVYL RQ +++  W+NYV  ++  L     W  +    + +R  SR CARL+++  L+ IA D+ +LQQFVLPMLATVI+ P+R FVP+ S+    GG W+ TLFQPL+  D  R+TVH+ MT VSS +YR  FS A  + + NGG I EL
Sbjct:  145 IVVEGLRNIEVYLDRQYEFYGTWYNYVDQVVFDLK-RCGWVVDAMPENRWRMASRDCARLVFLGCLHHIARDKVFLQQFVLPMLATVIRGPVRVFVPFISVQNVNGGEWQWTLFQPLVAPDPGRQTVHVVMTYVSSADYRPQFSDAHEYKRLNGGRIREL 303          
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX9_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 7.190e-31
Identity = 68/161 (42.24%), Postives = 101/161 (62.73%), Query Frame = 2
Query:  260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKH-WSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
            ++L  L++ME++L  Q+D+F AW+NY SD+ ++L  EK+ W       + +  GS  CA L+++AQL  IA    WL QFV P+LATV+Q PLR F+P  +++ + GG WK TLF P  +T   R T+H+AMT+  S  Y   F +A G+L+     +PEL
Sbjct:  122 VVLYGLKYMEIFLLEQDDHFGAWYNYTSDVRERL--EKNGWHVVPDVDNNWHVGSSNCAWLMFLAQLRSIAKPGAWLHQFVFPILATVVQSPLRLFLPLNTLNNAQGGPWKHTLFLPAWETGR-RPTLHVAMTMGYSSSYLPPFDNATGYLEYVENQLPEL 279          
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: SWIM-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.410e-29
Identity = 65/160 (40.62%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
            ++L  L++ME++L  Q+ +F AW+NY +D+ ++L  EK+     H  + +  GS  CARL+++AQL   A    WLQQF  P+LATV+Q PLR F+P+ + + + GG+WK  +FQP  +T + R T+H+AMT   S  Y   F +A G+L+     +PEL
Sbjct:  142 VVLYGLKYMELFLLEQDYHFGAWYNYTTDVRERL--EKNGWHVVHVDNNWHVGSSNCARLMFLAQLRSKAKPGAWLQQFAFPILATVVQSPLRVFLPFNAFTNAQGGSWKH-IFQPAWET-ARRSTLHVAMTTGYSSSYHPPFDNATGYLEYVENQLPEL 297          
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD20_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.270e-28
Identity = 71/176 (40.34%), Postives = 101/176 (57.39%), Query Frame = 2
Query:  260 IILEALRHMEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGG-------------AWKRTLFQPLIKTDSPRKT---VHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
            + LE +RHME YLS QED+   W  Y +++ + L  +  W+ E    +  R GSR C+RL++VAQL  +A +  WLQQF  P+LA VIQ PLR FVP+ S      G             ++  T   P + T  P +T   VH+ MT++SS +YRS+F+ A GW  ++GG +PEL
Sbjct:   79 VTLEGMRHMEAYLSCQEDFSMCWSIYGNELREGLP-KLGWTIEADAHNKHRLGSRNCSRLMFVAQLKHVAGNCNWLQQFAFPLLAIVIQVPLRGFVPWLSRLLLPDGPLYCRPQPYAHIRSFVDTHPVPTVFTVRPGRTHPAVHVVMTIMSSADYRSNFNDAPGWRDRSGGVLPEL 253          
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY21_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.160e-27
Identity = 60/144 (41.67%), Postives = 90/144 (62.50%), Query Frame = 2
Query:  308 EDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
            +D+F AW+NY SD+ ++L  +  W       + +  GS  CARL+++AQL  IA  R WLQQFV+P+LATV+  PLR F+P+ + + + GG WK T F P  +T + R T+H+AMT+  +  Y   F +A G+L+     +PEL
Sbjct:  138 DDHFGAWYNYTSDVRERL-EKNEWHVVPDVDNNWHVGSSNCARLMFLAQLRSIAKPRAWLQQFVVPILATVVHSPLRVFLPFNTFNNAQGGPWKHTHFLPAWET-ARRSTLHVAMTMGYNSSYHPPFDNATGYLEYVENQLPEL 279          
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG76_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.090e-25
Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 2
Query:  398 VDGFRTGSRRCARLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGAWKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIPEL 739
            V+ +R  SR CARL+++  L+ IA D+ +LQQFVLPMLATVI+ P+R FVP+ S+    GG W+ TLFQPL+  D  R+TVH+ MT VSS +YR   S    + + NGG I EL
Sbjct:    3 VNRWRMASRDCARLVFLGCLHHIARDKVFLQQFVLPMLATVIRGPVRVFVPFTSVQNVNGGEWQWTLFQPLVAPDPGRQTVHVVMTNVSSADYRPQCSDTHEYKRLNGGRIREL 116          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8908.17093.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
Uncharacterized1.130e-4449.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.280e-4148.75protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized7.880e-3947.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.570e-3946.88protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.050e-3647.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.190e-3142.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
SWIM-type2.410e-2940.63domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized3.270e-2840.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.160e-2741.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.090e-2551.75protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8908contigEcto-sp9_F_contig8908:114..2786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size744
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8908.17093.1prot_Ecto-sp9_F_contig8908.17093.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8908 1933..2786 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.893479-UTR-Ecto-sp9_F_contig8908:113..1701622930947.893479-UTR-Ecto-sp9_F_contig8908:113..170Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8908 114..170 +
1692278962.368013-UTR-Ecto-sp9_F_contig8908:113..1701692278962.368013-UTR-Ecto-sp9_F_contig8908:113..170Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8908 114..170 +
1622930947.9072645-UTR-Ecto-sp9_F_contig8908:1686..18871622930947.9072645-UTR-Ecto-sp9_F_contig8908:1686..1887Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8908 1687..1887 +
1692278962.3802283-UTR-Ecto-sp9_F_contig8908:1686..18871692278962.3802283-UTR-Ecto-sp9_F_contig8908:1686..1887Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8908 1687..1887 +
1622930947.925446-UTR-Ecto-sp9_F_contig8908:1907..19321622930947.925446-UTR-Ecto-sp9_F_contig8908:1907..1932Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8908 1908..1932 +
1692278962.3956099-UTR-Ecto-sp9_F_contig8908:1907..19321692278962.3956099-UTR-Ecto-sp9_F_contig8908:1907..1932Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8908 1908..1932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.9464264-CDS-Ecto-sp9_F_contig8908:1932..22001622930947.9464264-CDS-Ecto-sp9_F_contig8908:1932..2200Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 1933..2200 +
1692278962.4104984-CDS-Ecto-sp9_F_contig8908:1932..22001692278962.4104984-CDS-Ecto-sp9_F_contig8908:1932..2200Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 1933..2200 +
1622930947.9623911-CDS-Ecto-sp9_F_contig8908:2595..27861622930947.9623911-CDS-Ecto-sp9_F_contig8908:2595..2786Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 2596..2786 +
1692278962.4299018-CDS-Ecto-sp9_F_contig8908:2595..27861692278962.4299018-CDS-Ecto-sp9_F_contig8908:2595..2786Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8908 2596..2786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8908.17093.1

>prot_Ecto-sp9_F_contig8908.17093.1 ID=prot_Ecto-sp9_F_contig8908.17093.1|Name=mRNA_Ecto-sp9_F_contig8908.17093.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=153bp
MEVYLSRQEDYFFAWHNYVSDMIDKLIHEKHWSPETHKVDGFRTGSRRCA
RLLYVAQLNFIATDRKWLQQFVLPMLATVIQCPLRAFVPYASISTSYGGA
WKRTLFQPLIKTDSPRKTVHIAMTLVSSEEYRSDFSSAAGWLQKNGGSIP
ELC
back to top

mRNA from alignment at Ecto-sp9_F_contig8908:114..2786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8908.17093.1 ID=mRNA_Ecto-sp9_F_contig8908.17093.1|Name=mRNA_Ecto-sp9_F_contig8908.17093.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2673bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8908:114..2786+ (Ectocarpus species9 EcSCA_722f female)
CTGGCATCGAAGATAAAGGATCCGATCATCGACTCCCCCTTGCCTGCACC GACCCAGGTGTGTTCCTTTCTACTCATGGCCTAGTTTGTCCCGGGGAGGA CAGGTTGGGGTTTGCGTGATTAAAGCCGTCAAAGTTAACCCAGTTGCCGC CGATTTGTTTTTGAAATTTTCAAAACGTCGTATTCCGATTCCGAAGGTTC TCGACTAGAACCAAGTTTACATGTACATACAGTAGTTCTCTCCGCACGCA AATTGACTTCTATGTTATAGTCGTACAGAAGTCATGCACCGCATATGTGC GTAATGTATCGCGTATAGTACAACGGTAATCACAGCTAGCTGTACATGTA GTGCATCGTTAGTCACAGCTGTACAGTAGGTAAACTTCTTATTTGCGTTG CGGGAAGTTCTCGTGCGCACGCGGCGACACATGTTTGCTGTACCTTCGCC ATCACAGAGTACAAGACAATGTCGGGCACACAGCAGTCAGAACTTCCCCG TAAGTCTTCGAACGTGGTGTCCCCCGTATGGTGCCATACGGTAAACCCCA CGGATTTTTCGCGGGGATTTTGAGAGGGAATAGTTCCTGATATCCTAGGT TGAACATACCGGAAGCGAAATTTGACAGAATCTTGGGGCTGTACATACAG CAGTCAGATATTAGATACCCGTAGATTGACATGCTACTCAGCTTACTGTA TGGGGATATTTTGCATCACGGTTTTGCTTGGGTGTGATGAGGCAAAACAA GAGCTCCCCCGTTCCCTTGGTCTAGTATCATAGGTTGAACGTAGGCTTGG GGCTGTACAGCAGTCAGAGATTACATATGTAACCATTCACACTGTTGTAC ATTGTTATGGTAGGCCGTATTAGGGTTAGCATGTGGGATCCGAGCTCCGT TTGCATTGCTAGACGGAGGCGTCGAGAAAAACGTTCACACATGGGCCTGA CTAGCTGCCACCAGATATAGATACGGTATATACTACCATACCGCGTATCG CGTGTCTAGACGTATGTAGCTCAGATGAGCTACATGTAAAATCACTTTCG TATGTTGTCCGTTCGCTTCCGCGAGTTGATTTCCGTTGGAGGTTTGCTGT TTACGCACACAGTTTGGCGCGGCCTATCACATGAATAGGTATGGTTTACA TGCATTTGGAATGAGATGCCAAAAGGTCGCCTAACCCTTGATCACACAGC AGTAGCACAGGACTGTGGCTGGCAGGGTTGTTTATAGGGGAGTCTCTTAT GCTTTACCTTACCGTTTACCTTATTTACCTTTTATGCGCGCGTGGTGAGC GTCCATATCCCGAACGACGATGACGGAAACATGTACTGGCAAGGACAAAC CTTACCCTCGTTGAGCTCCACGAACACTCGCCCTAACTAACGGATCGATG GTGCGTGACTCCATACCCACGTCTAGGTGGCACTCCTTGAAATTTTCCTC TATGCCTCTTCAGGATCCCCTCCCCGTCAAGTTAGGGCGCTGACGTCCCG CGCTTTCTCTGCCCATCCTTAGCCTGAAAATCACACTGCAACAATTCCGT TATTGAAAATCGTTTGCGTGCAGACTGAAGCAGAAATGAGGGCGAAAGGT CTTAACAAGGATTACTTCACGGCAGCCCTGATGGTGCAGATAGCGGCCGC ACATGGCAATGGAGCTGGGATTCCCTTCCTCACGGAGGGTGACGGCAACT GCTTGTTGAACGCCGTTGCTCAGATCCTCGCGCGAAAGAAACAACGCGGG ATCAGGAACGACGTCAAGTCGTTGGCGGCGCAGCTACGGCTGAGCATCAT CCTCGAGGCGCTGCGGCACATGGAGGTCTACCTCTCTCGACAAGAGGACT ACTTCTTCGCCTGGCACAACTACGTTTCCGACATGATAGACAAGCTGATT CACGAGAAGCACTGGTCCCCCGAAACGCATAAGGTGGACGGGTTCCGGAC GGGCTCGCGCCGGTGCGCGCGGCTGCTGTACGTTGCACAGCTTAACTTCA TTGCCACTGATCGCAAATGGCTCCAGCAGTTCGTCCTTCCCATGCTGGCC ACTGTCATTCAGTGTCCTCTCCGCGCGTTCGTGCCATGTGAGTACCATCA TCAACTGATGTTCAACCGTAGTTGAACAGGCATGATATTAGGCTTGCGTA GGCTTGCGGAGTCTTCGCAGTTGAGCGCGAGGTGACATTAGACCTGAATG AGCGGACTTCAAAAGCGCAGGTGTCAACCACCGGATGACGTTCACATCGA AGTATTGTCGTGTGTGCGACAAAGTCAGTATTCATGTCATAGTTAGGCTC GTTCCTCCTTTACAGCACCATCATCAGCGCTTTAAGGGCCAGGTCTTGTG GGGTGATTCTCATACGAAGCTTTGGGTGCGGCACCGGGCATGGTGGGCAA CACCCAACTCCGATGTGGCGCCCTCACTGAAACTATATGAGCGTTAGTGC CTCGTTCGCGACCTCTGTCCGTCAACATGCAGACGCGAGCATCTCCACCT CGTACGGAGGTGCGTGGAAGCGGACCCTCTTCCAGCCGCTGATCAAGACT GATTCTCCACGCAAGACGGTCCACATCGCTATGACGTTGGTCTCTTCGGA GGAGTACAGATCTGACTTCTCGAGCGCGGCGGGTTGGCTGCAGAAGAACG GCGGCAGCATTCCAGAGCTCTGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8908:114..2786+

>mRNA_Ecto-sp9_F_contig8908.17093.1 ID=mRNA_Ecto-sp9_F_contig8908.17093.1|Name=mRNA_Ecto-sp9_F_contig8908.17093.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8908:114..2786+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGTCTACCTCTCTCGACAAGAGGACTACTTCTTCGCCTGGCACAA
CTACGTTTCCGACATGATAGACAAGCTGATTCACGAGAAGCACTGGTCCC
CCGAAACGCATAAGGTGGACGGGTTCCGGACGGGCTCGCGCCGGTGCGCG
CGGCTGCTGTACGTTGCACAGCTTAACTTCATTGCCACTGATCGCAAATG
GCTCCAGCAGTTCGTCCTTCCCATGCTGGCCACTGTCATTCAGTGTCCTC
TCCGCGCGTTCGTGCCATATGGAGGTCTACCTCTCTCGACAAGAGGACTA
CTTCTTCGCCTGGCACAACTACGTTTCCGACATGATAGACAAGCTGATTC
ACGAGAAGCACTGGTCCCCCGAAACGCATAAGGTGGACGGGTTCCGGACG
GGCTCGCGCCGGTGCGCGCGGCTGCTGTACGTTGCACAGCTTAACTTCAT
TGCCACTGATCGCAAATGGCTCCAGCAGTTCGTCCTTCCCATGCTGGCCA
CTGTCATTCAGTGTCCTCTCCGCGCGTTCGTGCCATACGCGAGCATCTCC
ACCTCGTACGGAGGTGCGTGGAAGCGGACCCTCTTCCAGCCGCTGATCAA
GACTGATTCTCCACGCAAGACGGTCCACATCGCTATGACGTTGGTCTCTT
CGGAGGAGTACAGATCTGACTTCTCGAGCGCGGCGGGTTGGCTGCAGAAG
AACGGCGGCAGCATTCCAGAGCTCTGCACGCGAGCATCTCCACCTCGTAC
GGAGGTGCGTGGAAGCGGACCCTCTTCCAGCCGCTGATCAAGACTGATTC
TCCACGCAAGACGGTCCACATCGCTATGACGTTGGTCTCTTCGGAGGAGT
ACAGATCTGACTTCTCGAGCGCGGCGGGTTGGCTGCAGAAGAACGGCGGC
AGCATTCCAGAGCTCTGC
back to top