mRNA_Ecto-sp9_F_contig89.17076.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig89.17076.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX58_9PHAE) HSP 1 Score: 375 bits (962), Expect = 1.520e-126 Identity = 191/205 (93.17%), Postives = 195/205 (95.12%), Query Frame = 3
Query: 120 MTRLMLASLLLLLHHVTPVTGFTTTGSCRCNLRMSSGSPRTPKEQLGGVPESRQKFISGLIGGVTALALPLAALADPPLEKFKKDEVCLQRGLNGACVKFGVGDTTEEVASVSTKAPVQEEPESELMATLKRRTMENKAKNDEEIATKTFVNGQSGEFGPFSRYVPVKHKDTGKFELVLVSELEEMKRNGLIVSERGGDVFVDPK 734
MTRLMLASLLLLLHH TP TGFTTTGSCRCNLRMSSGSPRTP EQ GGVPESRQKF+SGL GGVTALALPLAALADPPLEKFKKDEVCLQRGLNGACVKFGV DT EEVAS+STKAP QEEPESELMATLKRRT+ENKAKNDEEIATKTF NGQSGEFGPFSRYVPVKHKDTGKFELVL+SELEEMKRNGLIVSER GDVFVDPK
Sbjct: 1 MTRLMLASLLLLLHHFTPATGFTTTGSCRCNLRMSSGSPRTPTEQQGGVPESRQKFLSGLFGGVTALALPLAALADPPLEKFKKDEVCLQRGLNGACVKFGVDDTMEEVASISTKAPAQEEPESELMATLKRRTIENKAKNDEEIATKTFANGQSGEFGPFSRYVPVKHKDTGKFELVLISELEEMKRNGLIVSERLGDVFVDPK 205
BLAST of mRNA_Ecto-sp9_F_contig89.17076.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW7_9STRA) HSP 1 Score: 105 bits (261), Expect = 2.180e-22 Identity = 69/159 (43.40%), Postives = 95/159 (59.75%), Query Frame = 3
Query: 291 SGLIGGVTALALP--LAALADPPLEKFKKDEVCLQRG-LNGACVKFG--VGDTTEEVASVSTKAP------VQEEPESELMATLKRRTMENKAKNDEEIATKTFVNGQSGEFGPFSRYVPVKHKDTGKFELVLVSELEEMKRNGLIVSERGGDVFVDPK 734
+ +I GV A AL L L K +C++R +NG C K+ V +S TK VQEEPES+L+ L+++T+ENKAKN+ +A KTF+N Q+GEFGPFSRYV VK + GK+ELVL+ +L+++KR G+I E G FV K
Sbjct: 54 AAVIAGVAAPALADEYGVLKSESLVK-NTGAICVKRSAINGRCEKYSDEVVPLDASASSNRTKVDRVKRTVVQEEPESDLIKRLRQKTVENKAKNEAMVAEKTFMNNQAGEFGPFSRYVLVKRPNDGKYELVLIRDLDDLKRQGII--ESSGKAFVPGK 209
BLAST of mRNA_Ecto-sp9_F_contig89.17076.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8G9_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.420e-11 Identity = 51/137 (37.23%), Postives = 74/137 (54.01%), Query Frame = 3
Query: 336 ALADPPLEKFKKDEVCLQRGLNGACVKFGVG---DTTEEVASVSTKAP----------VQEEPESELMATLKRRTMENKAKNDEEIATKTFVNGQSGEFGPFSRYVPVKHKDTGKFELVLVSELEEMKRNGLIVSER 707
AL+D E F + C +RG GAC+ DTT + + +A +++E ES L+A L+RRT N KN ++ + F N QSGEFGPFSR+VPV D GK+ LVL E E++K+ + ++
Sbjct: 1 ALSDYKTELFVESG-CGRRGPLGACLDARTAAPRDTTAADEAQAARAGXXXXXXXXARMEQELESPLVAELRRRTAANAEKNARQVELQMFQNSQSGEFGPFSRFVPVAKND-GKYVLVLAGEYEDLKKQKKVAKQK 135
BLAST of mRNA_Ecto-sp9_F_contig89.17076.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4S0_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.770e-11 Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = 3
Query: 357 EKFKKD--EVCLQRGLNGACVKFGVGDTTEEVAS--------------VSTKAPVQEEPESELMATLKRRTMENKAKNDEEIATKTFVNGQSGEFGPFSRYVPVKHKDTGKFELVLVSELEEMKRNGLI 695
E+F+ D ++CL+R + G C ++ D EE + +K ++E + +L+ L +++ ENK +ND +A KTF+ + G+FGPFSRYVPV+H D G +EL+ E ++K+ G +
Sbjct: 76 EQFQVDPEQICLKRNVIGRCDRWVGDDLPEEKQNSVKDSMKKRTQENEAKSKQLAEKEAKGDLIEELLKKSAENKVENDRLVAEKTFLASEPGQFGPFSRYVPVRHFD-GTYELLTYPEYRKLKKQGKV 203
BLAST of mRNA_Ecto-sp9_F_contig89.17076.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJZ7_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 6.850e-9 Identity = 51/154 (33.12%), Postives = 77/154 (50.00%), Query Frame = 3
Query: 285 FISGLIGGVTALALPLAALA-----DPPLEKFKKDEVC-LQRGLNGACVKFGVGDTTEEVASVSTKAPVQEEPESELMATLKRRTMENKAKNDEEIATKTFVNGQSGEFGPFSRYVPVKHKDTGKFELVLVSELEEMKRNGLIVSERGGDVFVD 728
+ + + A+ LP AAL P F +D +Q+ LN DTT++ E +L+ TLKRRT++NKAKND + KTF+N ++G +GPF +++PV KD G++ L+ + +K G IV G D VD
Sbjct: 44 YFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNE--------DTTKKYT----------EDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKD-GQYVLLTEDQYNTLKGEGKIV---GRDFVVD 175 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig89.17076.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig89.17076.1 >prot_Ecto-sp9_F_contig89.17076.1 ID=prot_Ecto-sp9_F_contig89.17076.1|Name=mRNA_Ecto-sp9_F_contig89.17076.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=206bp MTRLMLASLLLLLHHVTPVTGFTTTGSCRCNLRMSSGSPRTPKEQLGGVPback to top mRNA from alignment at Ecto-sp9_F_contig89:7241..10977+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig89.17076.1 ID=mRNA_Ecto-sp9_F_contig89.17076.1|Name=mRNA_Ecto-sp9_F_contig89.17076.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3737bp|location=Sequence derived from alignment at Ecto-sp9_F_contig89:7241..10977+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig89:7241..10977+ >mRNA_Ecto-sp9_F_contig89.17076.1 ID=mRNA_Ecto-sp9_F_contig89.17076.1|Name=mRNA_Ecto-sp9_F_contig89.17076.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1236bp|location=Sequence derived from alignment at Ecto-sp9_F_contig89:7241..10977+ (Ectocarpus species9 EcSCA_722f female)back to top |