mRNA_Ecto-sp9_F_contig8895.17072.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8895.17072.1
Unique NamemRNA_Ecto-sp9_F_contig8895.17072.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8895.17072.1 vs.
Match: Steroid-5-alpha-reductase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF8_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 1.130e-90
Identity = 133/148 (89.86%), Postives = 138/148 (93.24%), Query Frame = 2 
Query:  239 VLSFVGSPHLQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGEIGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRAR 682
            +LS     ++  SFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSR+YPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLR PGE GYKIP+GGMFAYVSGANYFGECV WIGFAIAGWSLPATAFALYTLSNLAPRAR
Sbjct:   89 LLSMFVLHYVNRSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRIYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRRPGETGYKIPQGGMFAYVSGANYFGECVGWIGFAIAGWSLPATAFALYTLSNLAPRAR 236
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8895.17072.1 vs.
Match: 3-oxo-5-alpha-steroid (4-dehydrogenase (NADP(+)) n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YL18_ACAPL)

HSP 1 Score: 166 bits (421), Expect = 1.930e-47
Identity = 84/149 (56.38%), Postives = 97/149 (65.10%), Query Frame = 2 
Query:  233 NVVLSFVGSPHLQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGEIGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 679
            NV++S +   + Q +FVF F  RGG+P  +   L    F   N YLQ  +L    VYP SW  DPRFIIG   F +GM IN  SD ILR LR PGE GYKIP GGMF YVSGAN+FGE VEW GFAIA WSLP  AFA++T  N+ PRA
Sbjct:   99 NVLISLMIFHYFQRTFVFTFLIRGGKPTTLLAFLLAFFFCVTNGYLQGQYLTHYAVYPQSWSRDPRFIIGVFLFFSGMAINIHSDSILRNLRKPGETGYKIPHGGMFEYVSGANFFGEAVEWSGFAIACWSLPGLAFAIFTACNIGPRA 247
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BLAST of mRNA_Ecto-sp9_F_contig8895.17072.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZJ2_9STRA)

HSP 1 Score: 164 bits (415), Expect = 9.820e-47
Identity = 82/156 (52.56%), Postives = 97/156 (62.18%), Query Frame = 2 
Query:  215 N*THTINVVLSFVGSPH-LQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGEIGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 679
            N T   N++LS     H +  + VFP R R G+PMP+ +M+    F  IN YLQ  +L   +VY   W  D RF+ G   F AG  IN  SDGILR+LR     GYKIP GGMF YVSGAN+FGE VEW GF  AGWSLPATAFA +T  N+ PRA
Sbjct:   75 NLTSLPNLILSSAFVAHYINRTLVFPMRMRSGKPMPLSIMIMAFTFCCINGYLQARYLCSLKVYNEDWLADGRFLFGITLFLAGFAINMHSDGILRKLRTNNSSGYKIPRGGMFEYVSGANFFGEIVEWTGFTFAGWSLPATAFAFFTFCNIGPRA 230
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8895.17072.1 vs.
Match: 3oxo-5-alpha-steroid (4-dehydrogenase 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZ51_ACACA)

HSP 1 Score: 163 bits (413), Expect = 2.970e-46
Identity = 82/150 (54.67%), Postives = 99/150 (66.00%), Query Frame = 2 
Query:  230 INVVLSFVGSPH-LQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGEIGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPR 676
            +N VL  +   H +Q SFVFPF  RGG+P P  ++L   +F   N Y+Q  +  R  VY + W  DPRFI+G   F AGMFIN Q+D ILR LR PGE  YKIP GGMF YVSGAN+FGE +EW GFA+A WS+ A AFA +T SN  PR
Sbjct:   96 VNCVLVGLFLVHYIQRSFVFPFLIRGGKPTPAVLVLMAFVFCLGNGYMQGRYHTRYAVYADDWVYDPRFIVGIVLFFAGMFINIQADSILRNLRKPGETAYKIPRGGMFEYVSGANFFGEILEWTGFALASWSVVAFAFAFFTFSNTGPR 245
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8895.17072.1 vs.
Match: S5A_REDUCTASE (domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JHA2_GUITC)

HSP 1 Score: 165 bits (417), Expect = 4.480e-46
Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 2 
Query:  227 TINVVLSFVGSPH-LQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGEIGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 679
            T N +L  +   H +  + ++P+RTRG +P P+ +ML   LF  +N Y+Q   L   + Y  SWF DPRF IG   F  GM IN QSD ILRRLR PGE+GYKIP GGMF +VSGAN+ GE +EW GFA+A W+L + AFA++T  N+APRA
Sbjct:  164 TANTILLALFMAHYVNRALLYPWRTRGSKPTPLSVMLMAWLFCVVNGYMQTRMLTHVKKYEESWFIDPRFGIGVTIFFCGMLINFQSDDILRRLRKPGEVGYKIPRGGMFRFVSGANFLGEIIEWTGFAVASWTLQSAAFAVFTFCNIAPRA 315
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8895.17072.1 vs.
Match: 3-oxo-5-alpha-steroid (4-dehydrogenase (NADP(+)) n=2 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Z0V2_BRABE)

HSP 1 Score: 162 bits (409), Expect = 9.230e-46
Identity = 79/148 (53.38%), Postives = 96/148 (64.86%), Query Frame = 2 
Query:  236 VVLSFVGSPHLQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGEIGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 679
            V+L+     +   S +FP   RGG+P P+   L   LF   N YLQ  +L +   YP+ W  DPRFI+G   F+AGM IN  SD ILR LR PGE GYKIP+GGMF YVSGAN+FGE +EW GFA+A WSL A AFA +T  N+ PRA
Sbjct:   90 VLLAMYMLHYFHRSLIFPLLIRGGKPTPLVPFLLALLFCVYNGYLQARYLSQYAQYPDGWLTDPRFIVGVFMFAAGMAINIHSDHILRSLRKPGEAGYKIPQGGMFTYVSGANFFGEILEWAGFAVACWSLQAVAFATFTTLNIGPRA 237
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8895.17072.1 vs.
Match: Hypothetical (protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HDX7_9CRYP)

HSP 1 Score: 159 bits (402), Expect = 1.340e-45
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 2 
Query:  227 TINVVLSFVGSPH-LQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGEIGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 679
            T N +L  +   H +  + ++P+RTRG +P P+ +M    LF  +N Y+Q   L     Y   WF DPRF IG   F  GM IN QSD ILRRLR PG++GYKIP GGMF +VSGAN+ GE +EW GFAIA W++ A AFA++T  N+APRA
Sbjct:   15 TANTILLAMFMAHYVNRALLYPWRTRGSKPTPLSVMALAWLFCVVNGYMQTRMLTHVNKYDERWFIDPRFGIGVTVFFCGMLINFQSDDILRRLRKPGDVGYKIPRGGMFRFVSGANFLGEIIEWSGFAIACWNIQAAAFAIFTFCNIAPRA 166
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8895.17072.1 vs.
Match: 3-oxo-5-alpha-steroid (4-dehydrogenase 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D62504)

HSP 1 Score: 161 bits (407), Expect = 2.420e-45
Identity = 79/149 (53.02%), Postives = 98/149 (65.77%), Query Frame = 2 
Query:  233 NVVLSFVGSPHLQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGEIGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 679
            N ++S +   + Q +FVF F  RGG+P          +F   N YLQ  +L +  VY ++W  DPRFIIG   F  GM IN QSD ILR LR PGE GYKIP+GGMF Y+SGAN+FGE VEW GFA+A WSLP+ AF ++T SN+ PRA
Sbjct:   99 NFLISLMIIHYFQRTFVFTFLIRGGKPTTFLAFFLAFVFCITNGYLQGRYLTQYAVYQHNWLRDPRFIIGVILFFTGMAINIQSDSILRNLRKPGETGYKIPKGGMFEYISGANFFGEVVEWTGFALACWSLPSLAFLVFTASNIGPRA 247
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8895.17072.1 vs.
Match: S5A2 (dehydrogenase (Fragment) n=5 Tax=Neognathae TaxID=8825 RepID=A0A7K4JJ21_GEOCA)

HSP 1 Score: 157 bits (398), Expect = 2.580e-45
Identity = 79/135 (58.52%), Postives = 94/135 (69.63%), Query Frame = 2 
Query:  275 SFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGEIGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRA 679
            +F++PF TRG RP PV ++ FG LF   N +LQ  +L+    YPN+W  D RF  G   F  GM IN  SD +LRRLR PGE+ YKIP+GG+F YVSGANYFGE VEW GFAIA WSLPA AFA +TL  + PRA
Sbjct:    9 TFIYPFFTRG-RPFPVQLLFFGTLFCIYNGFLQGYYLIYCAEYPNNWCTDIRFTSGLFLFLLGMGINIHSDLLLRRLRKPGEVTYKIPQGGLFTYVSGANYFGEIVEWFGFAIATWSLPAFAFAFFTLCCIGPRA 142
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8895.17072.1 vs.
Match: 3-oxo-5-alpha-steroid (4-dehydrogenase 1 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854EC10)

HSP 1 Score: 160 bits (405), Expect = 2.940e-45
Identity = 76/149 (51.01%), Postives = 97/149 (65.10%), Query Frame = 2 
Query:  236 VVLSFVGSPHLQGSFVFPFRTRGGRPMPVPMMLFGALFVSINSYLQCTHLLRSRVYPNSWFGDPRFIIGAATFSAGMFINCQSDGILRRLRGPGEIGYKIPEGGMFAYVSGANYFGECVEWIGFAIAGWSLPATAFALYTLSNLAPRAR 682
            V++ F    ++Q + +FPF  RGG+P P+        F   N YLQ ++L +    P++W  DPRFI G+  F  GMFIN  SD ILR LR PGE GYKIP GG+F YVSGAN+FGE VEW GFA+AGWS P  AFA++T+  L  RA+
Sbjct:   82 VLMGFFICHYIQRTLIFPFLIRGGKPTPLASFALAFTFCCYNGYLQSSYLCKHATLPSNWTHDPRFIAGSVLFFCGMFINVYSDHILRNLRKPGETGYKIPHGGLFEYVSGANFFGEIVEWSGFAVAGWSTPGAAFAIFTVLVLLSRAQ 230
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8895.17072.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Steroid-5-alpha-reductase1.130e-9089.86n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
3-oxo-5-alpha-steroid1.930e-4756.384-dehydrogenase (NADP(+)) n=1 Tax=Acanthaster plan... [more]
Hypothetical9.820e-4752.56protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
3oxo-5-alpha-steroid2.970e-4654.674-dehydrogenase 1, putative n=1 Tax=Acanthamoeba c... [more]
S5A_REDUCTASE4.480e-4651.97domain-containing protein n=1 Tax=Guillardia theta... [more]
3-oxo-5-alpha-steroid9.230e-4653.384-dehydrogenase (NADP(+)) n=2 Tax=Branchiostoma be... [more]
Hypothetical1.340e-4550.66protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S... [more]
3-oxo-5-alpha-steroid2.420e-4553.024-dehydrogenase 1-like n=1 Tax=Patiria miniata Tax... [more]
S5A22.580e-4558.52dehydrogenase (Fragment) n=5 Tax=Neognathae TaxID=... [more]
3-oxo-5-alpha-steroid2.940e-4551.014-dehydrogenase 1 n=1 Tax=Nanorana parkeri TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8895contigEcto-sp9_F_contig8895:1057..5433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue3.6e-15
Seed eggNOG ortholog2880.D8LTF8
Preferred nameSRD5A1
KEGG rclassRC00145
KEGG koko:K09591,ko:K10901,ko:K12343,ko:K12344,ko:K14570
KEGG ReactionR02208,R02497,R07429,R07447,R08954,R10242
KEGG Pathwayko00140,ko00905,ko01100,ko01110,ko03008,ko03440,ko03460,ko05215,map00140,map00905,map01100,map01110,map03008,map03440,map03460,map05215
KEGG ModuleM00295,M00371,M00414
GOsGO:0000003,GO:0000166,GO:0001501,GO:0001505,GO:0001655,GO:0001889,GO:0003006,GO:0003674,GO:0003824,GO:0003865,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006091,GO:0006629,GO:0006694,GO:0006702,GO:0006706,GO:0006720,GO:0006721,GO:0006725,GO:0006805,GO:0006807,GO:0006950,GO:0007154,GO:0007267,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007530,GO:0007548,GO:0007610,GO:0007622,GO:0007623,GO:0008150,GO:0008152,GO:0008202,GO:0008207,GO:0008209,GO:0008406,GO:0008584,GO:0008610,GO:0009055,GO:0009056,GO:0009058,GO:0009267,GO:0009410,GO:0009605,GO:0009636,GO:0009719,GO:0009725,GO:0009917,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010268,GO:0010817,GO:0012505,GO:0014070,GO:0014074,GO:0014823,GO:0014850,GO:0016020,GO:0016042,GO:0016101,GO:0016128,GO:0016129,GO:0016131,GO:0016132,GO:0016229,GO:0016491,GO:0016614,GO:0016616,GO:0016627,GO:0016628,GO:0016999,GO:0017144,GO:0018879,GO:0018894,GO:0018958,GO:0018963,GO:0019752,GO:0021510,GO:0021536,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021794,GO:0021854,GO:0021983,GO:0021987,GO:0022410,GO:0022414,GO:0022900,GO:0023052,GO:0030283,GO:0030431,GO:0030539,GO:0030540,GO:0030900,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031984,GO:0032354,GO:0032355,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0033218,GO:0033554,GO:0033574,GO:0033764,GO:0033765,GO:0033993,GO:0034641,GO:0034698,GO:0034754,GO:0035270,GO:0035690,GO:0036094,GO:0036477,GO:0042133,GO:0042175,GO:0042180,GO:0042181,GO:0042221,GO:0042428,GO:0042430,GO:0042445,GO:0042446,GO:0042448,GO:0042493,GO:0042537,GO:0042592,GO:0042594,GO:0042745,GO:0042747,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043627,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0046483,GO:0046546,GO:0046660,GO:0046661,GO:0046677,GO:0046683,GO:0048037,GO:0048471,GO:0048511,GO:0048512,GO:0048513,GO:0048545,GO:0048608,GO:0048731,GO:0048732,GO:0048806,GO:0048856,GO:0048878,GO:0050213,GO:0050661,GO:0050662,GO:0050802,GO:0050896,GO:0051384,GO:0051591,GO:0051716,GO:0055088,GO:0055114,GO:0060322,GO:0060348,GO:0060416,GO:0060992,GO:0061008,GO:0061370,GO:0061458,GO:0065007,GO:0065008,GO:0070402,GO:0070848,GO:0070852,GO:0070887,GO:0071310,GO:0071320,GO:0071363,GO:0071375,GO:0071383,GO:0071384,GO:0071385,GO:0071392,GO:0071394,GO:0071396,GO:0071407,GO:0071417,GO:0071466,GO:0071495,GO:0071496,GO:0071548,GO:0071549,GO:0071704,GO:0071867,GO:0071868,GO:0071869,GO:0071870,GO:0071871,GO:0071872,GO:0097159,GO:0097164,GO:0097327,GO:0097458,GO:0098827,GO:0120025,GO:1901160,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701
EggNOG free text desc.3-oxo-5-alpha-steroid 4-dehydrogenase activity
EggNOG OGsKOG1638@1,KOG1638@2759
EC1.3.1.22,3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsteroid-5-alpha-reductase
Ec32 orthologEc-02_006180.1
Exons7
Model size684
Cds size267
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.0626225-UTR-Ecto-sp9_F_contig8895:1056..10981622930943.0626225-UTR-Ecto-sp9_F_contig8895:1056..1098Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 1057..1098 +
1692278959.739361-UTR-Ecto-sp9_F_contig8895:1056..10981692278959.739361-UTR-Ecto-sp9_F_contig8895:1056..1098Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 1057..1098 +
1622930943.1236098-UTR-Ecto-sp9_F_contig8895:1936..20321622930943.1236098-UTR-Ecto-sp9_F_contig8895:1936..2032Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 1937..2032 +
1692278959.7889156-UTR-Ecto-sp9_F_contig8895:1936..20321692278959.7889156-UTR-Ecto-sp9_F_contig8895:1936..2032Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 1937..2032 +
1622930943.139933-UTR-Ecto-sp9_F_contig8895:2867..29231622930943.139933-UTR-Ecto-sp9_F_contig8895:2867..2923Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 2868..2923 +
1692278959.8018043-UTR-Ecto-sp9_F_contig8895:2867..29231692278959.8018043-UTR-Ecto-sp9_F_contig8895:2867..2923Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 2868..2923 +
1622930943.1563177-UTR-Ecto-sp9_F_contig8895:3648..37291622930943.1563177-UTR-Ecto-sp9_F_contig8895:3648..3729Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 3649..3729 +
1692278959.8140826-UTR-Ecto-sp9_F_contig8895:3648..37291692278959.8140826-UTR-Ecto-sp9_F_contig8895:3648..3729Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 3649..3729 +
1622930943.173272-UTR-Ecto-sp9_F_contig8895:4594..46551622930943.173272-UTR-Ecto-sp9_F_contig8895:4594..4655Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 4595..4655 +
1692278959.8302763-UTR-Ecto-sp9_F_contig8895:4594..46551692278959.8302763-UTR-Ecto-sp9_F_contig8895:4594..4655Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 4595..4655 +
1622930943.192862-UTR-Ecto-sp9_F_contig8895:5352..54331622930943.192862-UTR-Ecto-sp9_F_contig8895:5352..5433Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 5353..5433 +
1692278959.8415198-UTR-Ecto-sp9_F_contig8895:5352..54331692278959.8415198-UTR-Ecto-sp9_F_contig8895:5352..5433Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8895 5353..5433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.0792255-CDS-Ecto-sp9_F_contig8895:1098..12201622930943.0792255-CDS-Ecto-sp9_F_contig8895:1098..1220Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8895 1099..1220 +
1692278959.758872-CDS-Ecto-sp9_F_contig8895:1098..12201692278959.758872-CDS-Ecto-sp9_F_contig8895:1098..1220Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8895 1099..1220 +
1622930943.0926976-CDS-Ecto-sp9_F_contig8895:1497..16061622930943.0926976-CDS-Ecto-sp9_F_contig8895:1497..1606Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8895 1498..1606 +
1692278959.7677107-CDS-Ecto-sp9_F_contig8895:1497..16061692278959.7677107-CDS-Ecto-sp9_F_contig8895:1497..1606Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8895 1498..1606 +
1622930943.1077075-CDS-Ecto-sp9_F_contig8895:1900..19361622930943.1077075-CDS-Ecto-sp9_F_contig8895:1900..1936Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8895 1901..1936 +
1692278959.7780786-CDS-Ecto-sp9_F_contig8895:1900..19361692278959.7780786-CDS-Ecto-sp9_F_contig8895:1900..1936Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8895 1901..1936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8895.17072.1prot_Ecto-sp9_F_contig8895.17072.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8895 1099..1936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8895.17072.1

>prot_Ecto-sp9_F_contig8895.17072.1 ID=prot_Ecto-sp9_F_contig8895.17072.1|Name=mRNA_Ecto-sp9_F_contig8895.17072.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=89bp
MECPNVLMSLWFLLYGSDEACLKSPANLALLSMFVLHYVNRCERKGRTYC
CQKSGWIQLDPHDQCSPQFRGVTSFARVFRVSFPNARR*
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mRNA from alignment at Ecto-sp9_F_contig8895:1057..5433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8895.17072.1 ID=mRNA_Ecto-sp9_F_contig8895.17072.1|Name=mRNA_Ecto-sp9_F_contig8895.17072.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4377bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8895:1057..5433+ (Ectocarpus species9 EcSCA_722f female)
ATCAGGTTCCCCCTCCTGGACGCGAAGCTGGGATGGATCCTAATGGAGTG
CCCGAACGTACTGATGTCGCTGTGGTTCCTGCTGTATGGCTCGGATGAAG
CCTGCCTCAAAAGTCCTGCAAACCTTGCTCTGTTGAGCATGTTCGTCCTG
CACTACGTCAACAGGTACAGTACATTGGCTAGACATGCTGTGCGGGTTTA
CCGTTCCCGCCTGTGCTTCTTTGACGCCAGGATGGTAGCGTTGTTCCTCG
AATTGGACACCCCGGCGGCCCGGCCGTTTGTTGTGGTTGTGTAGGGCTAA
GACTAGTAACTTGTTTGCCTGAGATGGGAGTGCTAATTTCTTTCTTGGCG
ACGCCTTGGGCGGGTCTTGCTCGGTCGCGGCTGACCTGCTTGCAGTCCCG
ACCCTGTGTTGTTGCTGGTCTCCTTCTTGTGTGTCGCGAAGGTGTGAGAG
AAAAGGGCGAACGTACTGCTGCCAGAAAAGCGGGTGGATTCAATTAGACC
CACACGATCAATGTAGTCCTCAGTTTCGTGGGGTCACCTCATTTGCAAGG
GTATGTGCACCGTTGAGAATACGGCAGCACCCACGCAACACACGAAACAT
TGAGTCTCAACCAAAGGAGAACTCTGGCTTGGTTATTGCGCCGTGCATTT
CCGGTGGTTATCGTTGGCCTCCGACCTCTTTACGTCTGCTCCGCTTAACT
CACCAGCCGGGACGCCTATCATGGCGCCGCGATTCCTGTCCGCGTGAGCC
CCATGTGCGTGTTGTTTCTGACAACTTCCTCCTCCTTCCTCCTTGTTGCA
TGGAAACGGATTGAAACTACTGCTGCTGTTGTTTCGTATGATAGGTCTTT
CGTGTTTCCTTTCCGAACGCGCGGAGGTAGGCCAATGCCCGTGCCGATGA
TGCTCTTCGGCGCTCTGTTCGTGAGCATCAACAGCTACCTGCAGTGTACC
CACCTGCTGCGTTCGCGAGTCTACCCGTGAGTACTACTGTACGAAGTATC
GGTCGATGGTGGTGCATACGTGCATACATGCACACGTGAGATTGAAAAGC
TTAATCCCACTGATGCCGCCGGCTTTGGGCTTTGGGCATCGTTTTGTGTT
CCCGATCCTTAGGGCTCTCTGCTGATCGGCACTCTGTTTGTCTATTTGTC
AAGTGTGGGTGCTCAGGACATTTTGCCCGCAATTTCGGGAGTGTAGTAAA
ATGCGTGTGCGGTTCTAGCACAAACCAGGTGGTTGAAAGGTGTTGGGAGG
GTGCAGTTAAGCAGCAGTCATTTCGTGGGGTGCAAACGGGTTCGGCTGCG
GATGACAATCTTCAGGGTTGTGTGTCATCTACCTCTCTCTGCCCTCCTTA
GACCAGTAGCCTTGGCAGAGCAGGGTTCTATGTAGAAAACATGTTGAATA
AAGCATGCAATCGGGGAAGATGGGTTAGAGGGCTAGGGAATAGGGTCTGC
GTACCCCCTCCCTGTTCTATTTCCTCATTAACTTAGTTTCTCGCGAAGGC
GGTTCCTTCAAACCCTTCTCTAGCCTCTGGTTGTTGTTGATCGCGCTTGG
GTTTGCTTTGTGGCGTTGTTGCTGCTGTCTTGCTGCTGCTGCTGCTGCTG
AAGCCGTCACTACTGTTGGTGTTGTTCCTCACGTTGACTCGTCGGAAGGA
ATCAACCATTTGACCATCAACCAGACAAGGACATGCTACATGCTCAACAT
CTACCGGAAGGTCGTGTACGTTTGATTAGCTGCTATCGGCGAGTATAGCA
AAAACGTTGCCGTTGCGTTTTTCGTCTCGTTCGTTTCGATGCTGGTTTTG
TTGCTGTGCAGCAACTCCTGGTTTGGAGACCCGCGCTTCATCATTGGCGC
AGCGACTTTTTCCGCAGGTGCGTTGGTCGTTGCGTGATTTATTCTCAACT
CTTTTCTTGTCTTGCTTAGAAGCGTTGACACCCATGTTGGCCATACACTC
CGCACGAGTTGTGAAGGCCTCATGGATTTTGAAAGCTGCTCGGGTCAAAA
CCGGCGCACATTTGCGGAGAGAAGCAGGACATGTTTTGGTAGAGAAGAAA
TGGGATTTTGGTTCGTGGAATCGTTTCGCACGGTTGGGTTTGGCCGAGTC
AAGACAGGGTATTGAAAAAGTGGGGGGATTTCAAGCCATCCGTCCGCGAA
ACTATTTTGTGGTTCTCATGCAAAATGGCGCTCGTTGTGGTGGTGCCTAT
TAATAGTCGTTGTTGGCCTTGTTCTTCACCTCATGTCACTCGGGTCGTGT
TGGGTGAACGAATTACTCCATCTATGTATACCCTCGGCTGTACAGTTCGA
ACTAAAATGCAAGATATTCACAAAAGTCGTGGCTCCATGTATTGATCTAC
GTATACCTAGACTGTAACAAAAAAGCTCGGCTGTACGGTCCGAACTAGAA
TGCATGGATATCCTCTAAAATCATTCTCTTGCTGCATATTTCATCGGTAG
TCATGTGCCGTCTCTTGTATGGCGCTCGTACAGTATGTATCAGTTTTTTT
TTTTATTTTCTCATGGGTCTCTGATGAATCGCTCCTCCTTCCTTCCTTCC
TTGTGCTCCTCCTCGTACCGCGCTGGCGGTACCTTCCAAAAGGCATGTTC
ATCAACTGTCAATCCGACGGAATCTTGAGGCGCCTTCGCGGCCCGGGAGA
GATCGGCTACAAGATTCCAGAAGGTGAGAGCAACACCAAACTGTGCCACT
AGCGGCACAAACTACTTAATGTATGCTTGGGCCGAAAAAACTCCATTTCG
GTGCCCACAAAAGAAAGCTGGCTACCATATTTGTCCGGCCTCTGATGAAG
AAAATCTTGAGAACTTTTCCGTTTGGCGTGGGAAAAGAATATATATAGAA
CGGATACTCTAGTAGTGCTGTATTGTTTTGATCTTGTTGTAGAACCAGAG
TCGTTACAGTACTGCATCGTACGCATCCTCTCGACAACACGACTGTAAGT
TTGAGCCAGGTGGTGCTGCTCCCTAACGATCAGTAGCCACCACATGTTGT
TGGACGTTTCTAGCAGTGTGCTTTCAAGTACGCATCCCTAGATCTGAGAG
AGGAGTATGTTGAAAACTGCTGTGGACTTGGAGTGCTACAATAGAGAATA
TAGTGCCATGGATCTCGCTGTGTTGTAGAGTGCCGCTGCTGAGGCTTACT
TATTTGCTGCCTAATCTGACGATTTTTCTTGGGAGACCGACCGTATTTAT
GCAGCATAGCTTCACACTCGATATGTACCATCTTGCTTTCATGGGCCTCA
TGGAAGGAACCGCCGTTCTCTGCCGGTGTTCTTTAGGTAGACTGCGAGTA
TGCTGTTCGAGGTTTCTCATGAGGGCAGTTGGCGATGTCGTGAGCGTCGC
AGAGCAGTAGCCGAGTTAGCGACATCACCAAAGTAGATGAATCAGAGCAG
CCTTTGGCTCACCCGTTGGTCCGAAACCCTCTTCCGTTCTGGCAGTCGCA
ACCTGCTACAGTTGATGCCCCCCTCTCCCCTACCCGCACTACTGCGGTCG
GGGCCGAAATCACCCGCTTCCTCCGTGGAACACCTCAGGTGGCATGTTCG
CGTACGTGTCTGGCGCCAACTACTTCGGGGAGTGTGTCGAGTGGATCGGG
TGCGTACATGTGTAGCAGCCTTGCGATGTCTTGACAGTTTCATAAGAGGA
CATGTGCGACATTTCGGTACACACGGTTTTGCGTTTAGTCTATGTATACA
AACGTGAGACTCTCTCGTTCTGCGAGACTGCAAGCTATGCATACTTCCTT
GGTTTTCTAAACCGTCTAGTCATTGGTTTTGATGAAACACCGTGGCATCG
TCATTCAAAATTTAGCCTAGACAGGGCTCGTGGTACTCCATGCAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGGGTACCCCCAGG
GGAACATGAGTACGTCCCAAGGAGCGGTTGACAACAACTGCTGTGCGTGG
TTTAACCAGGGGAGTAGACAAGTCCATTGAGGACCAGGCGCAACGTTGGA
GACGATACTGTGTTGTCGCACCGTACCTTTTAGAACGAAGATGCACGCGG
TCTACTTGTGGAAGATAAAGATATGTACTATTTTCAGCGTAACGGCACCT
TTTCTTGGCGGGGCCGGGCCTGTCACGGTACTTGCTTATTTCCGTGAAAG
CACCAAGGCGGTCCGGTACTCTCTACCTGGTAATACCATTTTCCTCTGCC
ACCCGCCGTGCCTCCTCGCTCGTTTCCGTTGATGCTTCCTCCCCCCTCCC
CTGCTGCCGTTTTTGTGACTTGGGCACTTGCTTTGGCATTGCATAGGTTC
GCAATCGCGGGGTGGTCCTTGCCGGCGACGGCGTTTGCTCTCTACACCCT
CTCCAACCTCGCCCCTCGAGCACGCAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8895:1057..5433+

>mRNA_Ecto-sp9_F_contig8895.17072.1 ID=mRNA_Ecto-sp9_F_contig8895.17072.1|Name=mRNA_Ecto-sp9_F_contig8895.17072.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8895:1057..5433+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGTGCCCGAACGTACTGATGTCGCTGTGGTTCCTGCTGTATGGCTC
GGATGAAGCCTGCCTCAAAAGTCCTGCAAACCTTGCTCTGTTGAGCATGT
TCGTCCTGCACTACGTCAACAGATGGAGTGCCCGAACGTACTGATGTCGC
TGTGGTTCCTGCTGTATGGCTCGGATGAAGCCTGCCTCAAAAGTCCTGCA
AACCTTGCTCTGTTGAGCATGTTCGTCCTGCACTACGTCAACAGGTGTGA
GAGAAAAGGGCGAACGTACTGCTGCCAGAAAAGCGGGTGGATTCAATTAG
ACCCACACGATCAATGTAGTCCTCAGTTTCGTGGGGTCACCTCATTTGCA
AGGGTGTGAGAGAAAAGGGCGAACGTACTGCTGCCAGAAAAGCGGGTGGA
TTCAATTAGACCCACACGATCAATGTAGTCCTCAGTTTCGTGGGGTCACC
TCATTTGCAAGGGTCTTTCGTGTTTCCTTTCCGAACGCGCGGAGGTAGGT
CTTTCGTGTTTCCTTTCCGAACGCGCGGAGGTAG
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