mRNA_Ecto-sp9_F_contig8894.17071.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8894.17071.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ4_ECTSI) HSP 1 Score: 633 bits (1632), Expect = 1.240e-214 Identity = 320/321 (99.69%), Postives = 320/321 (99.69%), Query Frame = 1
Query: 1 SCRLLEPEMTLIKLKEKEGDPQSVANQLRALMTHFNRLVEDDGLVKRFWGHVKQSPLGLLRRSRRHGGGGGLSAPSSMGDRNRTGGVATMEEDGAATLPTPLLEQPQGAPPLSELTADSLALVLDGPSLAHVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVKRGVVPTPVTLSIGDGANDVGMIQEAQIGVGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFFTAMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLNLR 963
SCRLLEPEMTLIKLKEKEGDPQSV NQLRALMTHFNRLVEDDGLVKRFWGHVKQSPLGLLRRSRRHGGGGGLSAPSSMGDRNRTGGVATMEEDGAATLPTPLLEQPQGAPPLSELTADSLALVLDGPSLAHVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVKRGVVPTPVTLSIGDGANDVGMIQEAQIGVGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFFTAMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLNLR
Sbjct: 726 SCRLLEPEMTLIKLKEKEGDPQSVVNQLRALMTHFNRLVEDDGLVKRFWGHVKQSPLGLLRRSRRHGGGGGLSAPSSMGDRNRTGGVATMEEDGAATLPTPLLEQPQGAPPLSELTADSLALVLDGPSLAHVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVKRGVVPTPVTLSIGDGANDVGMIQEAQIGVGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFFTAMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLNLR 1046
BLAST of mRNA_Ecto-sp9_F_contig8894.17071.1 vs.
Match: Phospholipid-transporting (ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ9_9STRA) HSP 1 Score: 374 bits (961), Expect = 1.030e-115 Identity = 197/330 (59.70%), Postives = 246/330 (74.55%), Query Frame = 1
Query: 1 SCRLLEPEMTLIKLKEKEGDPQSVANQLRALMTHFNRLVEDDGLVKRFWGHVKQS--PLGLLRRSRRHGGGGGLSAPSSMGDRNRTGGVATMEEDGAATLPTPLLEQPQG-------APPLSELTADSLALVLDGPSLAHVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVKRGVVPTPVTLSIGDGANDVGMIQEAQIGVGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFFTAMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLNLR 963
SCRLLEP MTLIKLKE++GDP SV QL+ L HF RL EDD L + WG V +S P G + + G G +G+ + GG+ + AATLP PLLE+P AP +S +D+LA+V+DG SL H+LG+ + + + L + MC+SV+ACRVSPAQKRL+VRLVK+ V P P+TL+IGDGANDVGMIQEAQ+GVG+SGKEGRQAVNN+DFAIAQFRFL+RL+LVHGHWDYRR+CKVILYSFYKN LTF LFY+CFY+G SGQSL+ESLVYSG+NFF A+PIL +G+FD+DV ++ A +LY VG +DLN+R
Sbjct: 826 SCRLLEPHMTLIKLKERDGDPASVDRQLQGLCAHFGRLAEDDSLFQNQWGSVLRSVVPKGAKPAASKGGKRG-------VGEGDVEGGLGGVAA--AATLPEPLLERPPARSGAESEAPMIS---SDALAMVVDGASLVHILGHDDKQALFLRVACMCRSVVACRVSPAQKRLLVRLVKKNVRPAPITLAIGDGANDVGMIQEAQVGVGMSGKEGRQAVNNADFAIAQFRFLRRLLLVHGHWDYRRLCKVILYSFYKNIALTFILFYYCFYSGLSGQSLYESLVYSGYNFFLALPILCVGLFDRDVNDRAAAAAPRLYRVGTHNLDLNVR 1143
BLAST of mRNA_Ecto-sp9_F_contig8894.17071.1 vs.
Match: Phospholipid-transporting (ATPase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8B9_HETAK) HSP 1 Score: 331 bits (849), Expect = 6.040e-106 Identity = 173/325 (53.23%), Postives = 217/325 (66.77%), Query Frame = 1
Query: 1 SCRLLEPEMTLIKLKEKEG----DPQSVANQLRALMTHFNRLVEDDGLVKRFWGHVKQSPLGLLRRSRRHGGGGGLSAPSSMGDRNRTGGVATMEEDGAATLPTPLLEQPQGAPPLSELTADSLALVLDGPSLAHVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVKRGVVPTPVTLSIGDGANDVGMIQEAQIGVGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFFTAMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLNLR 963
SCRLL P+M +IKL EG DP++ A Q+R L HF RL ED +W V G R+R G M+ + +LP PLL P AP +LT+D LALV++G +L H++G E ER L + +C+SVIACRVSP QKRL+VRLVK GV P+TL++GDGANDVGMIQEAQ+GVGISGKEGRQAVN +DFAIAQFRFL+RL+ +HG WDYRR CKV+LYSFYKN VL F LFYF + G+SGQSL++S VY+G+NFF MPIL++G+FD+DV +TA LY GR MD++L+
Sbjct: 60 SCRLLHPDMVMIKLAGGEGGSGGDPEATARQVRLLYRHFARLTEDQASFGHWWQKVASRLPGAAARAR---------------------GETEMDGEALPSLPAPLLSAPPQAPAFEDLTSDHLALVVEGSALLHIMGRAELERKFLRVARLCRSVIACRVSPEQKRLLVRLVKLGVEGAPITLAVGDGANDVGMIQEAQVGVGISGKEGRQAVNTADFAIAQFRFLRRLLFLHGRWDYRRTCKVVLYSFYKNMVLAFILFYFTCFCGWSGQSLYDSWVYAGYNFFLGMPILIVGLFDRDVSEKTALGYPSLYMSGRENMDMSLK 363
BLAST of mRNA_Ecto-sp9_F_contig8894.17071.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI04_9PHAE) HSP 1 Score: 315 bits (806), Expect = 2.210e-105 Identity = 167/190 (87.89%), Postives = 172/190 (90.53%), Query Frame = 1
Query: 25 MTLIKLKEKEGDPQSVANQLRALMTHFNRLVEDDGLVKRFWGHVKQSPLGLLRRSRRHGGGGG--LSAPSSMGDRNRTGGVATMEEDGAATLPTPLLEQPQGAPPLSELTADSLALVLDGPSLAHVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVKRGVVPTPVTLSIGDGANDVGMIQEAQ 588
MTLIKLKE+EGDPQSV NQLRALM +F RLVED+GLVKRFWGHVKQ+PLGLLRRSR LSAPSSM DRNRT GVATMEEDGAATLPTPLLEQPQGAP +SELTADSLALVLDGPSLAHVLGN EAERMLLTLGSMC SVIACRVSPAQKRLIVRLVKRGVVP PVTLSIGDGANDVGMIQEAQ
Sbjct: 1 MTLIKLKEQEGDPQSVVNQLRALMEYFKRLVEDEGLVKRFWGHVKQNPLGLLRRSRXXXXXXXXXLSAPSSMRDRNRTEGVATMEEDGAATLPTPLLEQPQGAPQISELTADSLALVLDGPSLAHVLGNAEAERMLLTLGSMCTSVIACRVSPAQKRLIVRLVKRGVVPKPVTLSIGDGANDVGMIQEAQ 190
BLAST of mRNA_Ecto-sp9_F_contig8894.17071.1 vs.
Match: Phospholipid-transporting (ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGI1_9STRA) HSP 1 Score: 313 bits (802), Expect = 2.640e-94 Identity = 180/326 (55.21%), Postives = 222/326 (68.10%), Query Frame = 1
Query: 1 SCRLLEPEMTLIKLKEKEGDPQSVANQLRALMTHFNRLVE-----DDGLVKRFWGHVKQSPLGLLRRSRRHGGGGGLSAPSSMGDRNRTGGVATMEEDGAATLPTPLLEQPQGAPPLSELTADSLALVLDGPSLAHVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVKRGVVPTPVTLSIGDGANDVGMIQEAQIGVGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFFTAMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLNLR 963
SCRLL MTL+KLK+ GDP ++ L+ L+ + LVE D L +R + Q RR G G + G+ + V +E++ P E AP ELT+D++ALV+DGP+LAHVLG+PE E M L L S+C+SV+ACRVSPAQKRL+VRLVK GV P P+TLSIGDGANDV MIQEAQIGVGISGKEG+QAVN++DFAIAQFR+L+RL+L+HG +DYRR+ KVILYSFYKN VLTF LFY+ F+TGFSGQSLF LVYS FNF AMPI+ +G FD D+ Q +Y GR MDLN+R
Sbjct: 716 SCRLLSSRMTLLKLKDT-GDPATIRRHLKKLLNALDWLVERERKLGDTLGRRIMERMTQ----CARR-----GPGDFRSSWQAGEED----VKILEDEDLKVCFRPQNE----APHFKELTSDTVALVVDGPALAHVLGDPEYEAMFLRLSSICRSVVACRVSPAQKRLVVRLVKAGVKPMPITLSIGDGANDVAMIQEAQIGVGISGKEGQQAVNSADFAIAQFRYLRRLLLIHGRYDYRRMSKVILYSFYKNMVLTFILFYYLFFTGFSGQSLFNDLVYSAFNFLCAMPIICVGFFDIDIFPQHVLAWKWVYMSGRDHMDLNIR 1023
BLAST of mRNA_Ecto-sp9_F_contig8894.17071.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMU9_9STRA) HSP 1 Score: 263 bits (671), Expect = 7.440e-81 Identity = 136/214 (63.55%), Postives = 167/214 (78.04%), Query Frame = 1
Query: 328 PPLSELTADSLALVLDGPSLAHVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVKRGVVPTPVTLSIGDGANDVGMIQEAQIGVGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLF--ESLVYSGFNFFTAMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLNLR 963
P LSE++ + LALV+DGP+L ++ + EA LL LG CK+V+ACRVSPAQK+LIV++VK G+ P+TLSIGDGANDV MIQEAQIGVGISGKEGRQAVN+SDFAIAQFRFLKRL+LVHG W+Y R KVI+YSFYKN VL + LF+F +GFSGQSL+ +S YSGFNFF +P L+GIF+ DV TA + HKLY G G +LN++
Sbjct: 27 PVLSEMSTEHLALVVDGPALLEIMDDEEARHQLLQLGCFCKAVLACRVSPAQKQLIVKMVKDGLPTKPITLSIGDGANDVPMIQEAQIGVGISGKEGRQAVNSSDFAIAQFRFLKRLLLVHGRWNYLRTAKVIIYSFYKNTVLVWLLFFFACESGFSGQSLYGGDSWCYSGFNFFLGLPPFLVGIFETDVKADTAMKYHKLYLSGLQGKELNIK 240
BLAST of mRNA_Ecto-sp9_F_contig8894.17071.1 vs.
Match: PhoLip_ATPase_C (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL8_9PHAE) HSP 1 Score: 246 bits (628), Expect = 1.550e-75 Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 1
Query: 595 VGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFFTAMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLNLR 963
+GISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFF AMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLNLR
Sbjct: 1 MGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFFLAMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLNLR 123
BLAST of mRNA_Ecto-sp9_F_contig8894.17071.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2W0_9STRA) HSP 1 Score: 240 bits (613), Expect = 2.670e-75 Identity = 121/209 (57.89%), Postives = 158/209 (75.60%), Query Frame = 1
Query: 352 DSLALVLDGPSLAHVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVK-----RGVVPTPVTLSIGDGANDVGMIQEAQIGVGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFFTAMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLNLR 963
DSL++++ G +L H+LG+PE+E L+ + +CKSVIACRVSP QK +V LV+ R P+ L+IGDGANDVGMIQ+AQ+GVGISGKEG QAVN+SDFAIAQFRFL+RL+LVHG W YRR+ KV+LYSFYKN V+T LF++ +TGFSG SL+ESLVYSG+NFF PI +IG D+D+ + A ++Y GR ++L +R
Sbjct: 33 DSLSVIVTGEALTHILGDPESEHALMVVAQLCKSVIACRVSPKQKADLVDLVRHRSPGRSGKNKPMCLAIGDGANDVGMIQQAQVGVGISGKEGLQAVNSSDFAIAQFRFLRRLLLVHGRWSYRRMSKVVLYSFYKNIVITLTLFFYSMFTGFSGASLYESLVYSGYNFFLGWPIFIIGCIDRDLPDSYALAHPQVYVSGRKNLNLGVR 241
BLAST of mRNA_Ecto-sp9_F_contig8894.17071.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GET8_9STRA) HSP 1 Score: 246 bits (628), Expect = 3.030e-75 Identity = 123/206 (59.71%), Postives = 160/206 (77.67%), Query Frame = 1
Query: 340 ELTADSLALVLDGPSLAHVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVKRGVVPTPVTLSIGDGANDVGMIQEAQIGVGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFFTAMPILLIGIFDKDVGNQTATECHKLYAVGRAGMDLN 957
++ ++ +AL++DGPSL + +PE + LL + C+ V+ACRVSP QK+LIV LV+ G+ PVTL+IGDGANDVGMIQEAQIGVGISG EGRQAVNNSDFAIAQF+FLKRL++VHG W+YRR+ KVI+YSF+KN VLT L ++ F SGQSL+E+ VY+GFNFF +PILLIG FD+D+ ++ A +Y+VGR D+N
Sbjct: 1 QMNSEHVALIVDGPSLFTIFKHPEMKAKLLRIACFCRVVVACRVSPKQKQLIVDLVQTGLARRPVTLAIGDGANDVGMIQEAQIGVGISGHEGRQAVNNSDFAIAQFKFLKRLLIVHGRWNYRRISKVIVYSFHKNIVLTIILAFWTFNCALSGQSLYEAYVYTGFNFFLGVPILLIGFFDQDLSDKVAMANPGVYSVGREKRDMN 206
BLAST of mRNA_Ecto-sp9_F_contig8894.17071.1 vs.
Match: Phospholipid-transporting (ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX5_9STRA) HSP 1 Score: 260 bits (665), Expect = 6.120e-75 Identity = 153/310 (49.35%), Postives = 197/310 (63.55%), Query Frame = 1
Query: 67 SVANQLRALMTHFNRLVEDDGLVKRFWG-------HVKQSPLGLL------RRSRR-----------HGGGGGLSAPSSMGDRNRTGGVATMEEDGAATLPTPLLEQP------QGAPPLSELTADSLALVLDGPSLAHVLGNPEAERMLLTLGSMCKSVIACRVSPAQKRLIVRLVKRGVV-PTPVTLSIGDGANDVGMIQEAQIGVGISGKEGRQAVNNSDFAIAQFRFLKRLMLVHGHWDYRRVCKVILYSFYKNFVLTFCLFYFCFYTGFSGQSLFESLVYSGFNFFTAMPILLIGIFDKDVGNQT 903
++ QLR L+THF L+EDD LV G +V PL + RSRR + G G A + + D V EEDG E+ + PL ++ D LAL++DGPSL + G+ E ER+LL + +CKSV+ACRVSPAQKR+++RLVK+GV P P+TL+IGDGANDV MIQEAQ+GVGISG+EGRQAVN++DFAI+QFRF++ L+L HG W YRR KVILYSFYKN VLTF LF + + TGFSGQSLFE VY+ +NF AMP + G+FD+D+ +T
Sbjct: 905 ALRQQLRKLVTHFECLIEDDTLVDGLTGSSRGGHGNVGVKPLWRMWQKRRVERSRRRQRPSFYTKLFNSGAGVEEAGTGVNDMLLEPLVEDGEEDGGEEYHVGGWEENFVRHSVTSSNPLQDVQTDHLALIVDGPSLGRIFGDWEMERLLLRVARLCKSVVACRVSPAQKRMLIRLVKKGVKHPKPITLAIGDGANDVAMIQEAQVGVGISGREGRQAVNSADFAISQFRFIEPLLLKHGRWSYRRTSKVILYSFYKNIVLTFVLFAYTWLTGFSGQSLFEDYVYTSYNFMLAMPPICFGLFDRDISVET 1214 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8894.17071.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8894.17071.1 >prot_Ecto-sp9_F_contig8894.17071.1 ID=prot_Ecto-sp9_F_contig8894.17071.1|Name=mRNA_Ecto-sp9_F_contig8894.17071.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=313bp MTLIKLKEKEGDPQSVANQLRALMTHFNRLVEDDGLVKRFWGHVKQSPLGback to top mRNA from alignment at Ecto-sp9_F_contig8894:1199..5484+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8894.17071.1 ID=mRNA_Ecto-sp9_F_contig8894.17071.1|Name=mRNA_Ecto-sp9_F_contig8894.17071.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4286bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8894:1199..5484+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8894:1199..5484+ >mRNA_Ecto-sp9_F_contig8894.17071.1 ID=mRNA_Ecto-sp9_F_contig8894.17071.1|Name=mRNA_Ecto-sp9_F_contig8894.17071.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1878bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8894:1199..5484+ (Ectocarpus species9 EcSCA_722f female)back to top |