mRNA_Ecto-sp9_F_contig889.17067.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig889.17067.1
Unique Name	mRNA_Ecto-sp9_F_contig889.17067.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig889.17067.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG0_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 2.690e-105
Identity = 167/180 (92.78%), Postives = 176/180 (97.78%), Query Frame = 1

Query:   16 MKNSRTAVAGSTARLKPPEWAIFMVAVMADLVSAAGLLPVERVSLFRGLAVFLLYREWALAFAYGFVLPRVVPLIAVCFLKHKWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTNVGHDNSSSSGARVRQRNPLR 555
            MKNSRTAVAGSTARL+PPEWAIFMVA++ADLVSAAGLLPVER+SLFRGLAVFLLY+EWALA A GFVLPRVVPLIAVCFLK KWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHR+SRH+QEG+VSGYDVSSVSGEEVVELSSWAAET +VGHDNSSSSGARVRQRNPLR
Sbjct:    1 MKNSRTAVAGSTARLQPPEWAIFMVAIIADLVSAAGLLPVERLSLFRGLAVFLLYKEWALASACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHRHSRHSQEGKVSGYDVSSVSGEEVVELSSWAAETASVGHDNSSSSGARVRQRNPLR 180

[Close]

BLAST of mRNA_Ecto-sp9_F_contig889.17067.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L1_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 1.030e-101
Identity = 167/185 (90.27%), Postives = 172/185 (92.97%), Query Frame = 1

Query:    1 HIASNMKNSRTAVAGSTARLKPPEWAIFMVAVMADLVSAAGLLPVERVSLFRGLAVFLLYREWALAFAYGFVLPRVVPLIAVCFLKHKWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTNVGHDNSSSSGARVRQRNPLR 555
            HIA  MKNSRT VAG TARL+PPEWAIFMVAV+ADLVSAAGLLP ER+SLFRGLAVFLLYREWALAFA GFVLPRVVPLIAVCFLK KWRAF ASAQERLNAL ATANE AG+STNVP AGMGGNTSAHR SRHTQEGEVSGYDVSSVSGEEVVELSSWAAETT+VGH NSSSSGARVRQRNPLR
Sbjct:   73 HIAFIMKNSRTQVAGITARLQPPEWAIFMVAVIADLVSAAGLLPAERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFNASAQERLNALVATANECAGLSTNVPQAGMGGNTSAHRESRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHGNSSSSGARVRQRNPLR 257

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig889.17067.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig889.17067.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	2.690e-105	92.78	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.030e-101	90.27	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig889	contig	Ecto-sp9_F_contig889:20031..22736 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-22_001970.1
Exons	3
Model size	1046
Cds size	543
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig889.17067.1	prot_Ecto-sp9_F_contig889.17067.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig889 20046..22248 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930942.5404491-UTR-Ecto-sp9_F_contig889:20030..20045	1622930942.5404491-UTR-Ecto-sp9_F_contig889:20030..20045	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig889 20031..20045 +
1692278959.5104966-UTR-Ecto-sp9_F_contig889:20030..20045	1692278959.5104966-UTR-Ecto-sp9_F_contig889:20030..20045	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig889 20031..20045 +
1622930942.6141682-UTR-Ecto-sp9_F_contig889:22248..22736	1622930942.6141682-UTR-Ecto-sp9_F_contig889:22248..22736	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig889 22249..22736 +
1692278959.5769806-UTR-Ecto-sp9_F_contig889:22248..22736	1692278959.5769806-UTR-Ecto-sp9_F_contig889:22248..22736	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig889 22249..22736 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930942.5590334-CDS-Ecto-sp9_F_contig889:20045..20309	1622930942.5590334-CDS-Ecto-sp9_F_contig889:20045..20309	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig889 20046..20309 +
1692278959.5432758-CDS-Ecto-sp9_F_contig889:20045..20309	1692278959.5432758-CDS-Ecto-sp9_F_contig889:20045..20309	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig889 20046..20309 +
1622930942.5763977-CDS-Ecto-sp9_F_contig889:21094..21232	1622930942.5763977-CDS-Ecto-sp9_F_contig889:21094..21232	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig889 21095..21232 +
1692278959.555515-CDS-Ecto-sp9_F_contig889:21094..21232	1692278959.555515-CDS-Ecto-sp9_F_contig889:21094..21232	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig889 21095..21232 +
1622930942.59376-CDS-Ecto-sp9_F_contig889:22107..22248	1622930942.59376-CDS-Ecto-sp9_F_contig889:22107..22248	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig889 22108..22248 +
1692278959.5665648-CDS-Ecto-sp9_F_contig889:22107..22248	1692278959.5665648-CDS-Ecto-sp9_F_contig889:22107..22248	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig889 22108..22248 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig889:20031..22736+
coding sequence from alignment at Ecto-sp9_F_contig889:20031..22736+

protein sequence of mRNA_Ecto-sp9_F_contig889.17067.1

>prot_Ecto-sp9_F_contig889.17067.1 ID=prot_Ecto-sp9_F_contig889.17067.1|Name=mRNA_Ecto-sp9_F_contig889.17067.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=181bp
MKNSRTAVAGSTARLKPPEWAIFMVAVMADLVSAAGLLPVERVSLFRGLA
VFLLYREWALAFAYGFVLPRVVPLIAVCFLKHKWRAFKASAQERLNALAA
TANERAGVSTNVPHAGMGGNTSAHRNSRHTQEGEVSGYDVSSVSGEEVVE
LSSWAAETTNVGHDNSSSSGARVRQRNPLR*

mRNA from alignment at Ecto-sp9_F_contig889:20031..22736+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig889.17067.1 ID=mRNA_Ecto-sp9_F_contig889.17067.1|Name=mRNA_Ecto-sp9_F_contig889.17067.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2706bp|location=Sequence derived from alignment at Ecto-sp9_F_contig889:20031..22736+ (Ectocarpus species9 EcSCA_722f female)
CACATCGCCTCCAATATGAAGAACAGCAGAACAGCAGTTGCTGGGAGTAC
GGCACGACTGAAGCCGCCAGAGTGGGCCATCTTCATGGTGGCCGTAATGG
CGGACCTCGTCTCTGCTGCCGGACTCCTTCCCGTCGAACGCGTCTCACTC
TTTCGAGGTCTGGCGGTGTTCTTGCTGTACAGGGAGTGGGCGCTGGCTTT
CGCCTACGGCTTCGTTCTACCCCGGGTCGTGCCCTTGATCGCGGTGTGCT
TCTTGAAGCATAAGTGGAGGGCGTTTAAAGTGAGTGTGAGGTGAACACGA
TGTTTTTTCAAATTGGTTTTGTTCTCCGGAGATACAGCAGTGCTGTCTTT
TACACAAGAGGTGTTCTGCAGGGAGAGCAACTTTTCCTTTCCTATCTACA
GTACAAGAGGACTGCCCAACATCCCAGCAACGTATACATGAATTTTGAAC
CATGCTCGCAGTTTCGACCTGAACCCTGCAGTGTTGCCATCTGTACCATC
CGGGGTAATGCGAAATATCCATCTGCAATTCAACGTGTGTTAATTACTCA
ATGAGAGAAGGGTGCAGCTGCTCCCTTAAAAATGTGGTGTGCAATACCAC
TGAAAAAGAGGCGCTCTACGCGCTATTCCACTTGTGTCAAAAGTACATTT
ACTTCTTACATTTGTCACAAGGTTGCCAGCTGGACCAACAGGGCATGTCA
CCACCAATCATCCAGCCGACGAGATGCTCACCACCGTTGAAAGCAGAAAA
CGTACGGGTGCCGAGTGCGACGTACCAGTACTACGTAAGCTACAGCAGTA
AAGTCGTCTACAGTTTTTATCTGTTGTTCCAGCATCGTGGCTTCAGCGAA
ACATACCCCATGCATAACATTGTGATCTCGGGGCACGCAAGCTGCGAGGG
CAGATTCAAGTATCTTTACGTAGGACCCATACGTGCTTCGCCTAAACGCC
CATGTGACAAACCGATCTCGGAAATGAAACTCTTCGCCACAACTGGCGGG
AGTCGGCTCCTTCGGCAAACTGTTGTGACGATTTGCCTCTCTCTCTGCGC
CTCCACCAAAACAGGCCTCCGCCCAGGAACGGTTGAACGCCTTGGCTGCG
ACTGCGAACGAGCGCGCGGGGGTCTCGACGAATGTTCCGCACGCAGGCAT
GGGCGGGAACACATCTGCCCATCGAAATAGTCGGCATACTCAGGAAGGGG
AGGTGAGATCGGCTGAACAGCTGTGACGGCTGCCGGCGATATGTCGACAT
TGGCTCGACGTGGGGACCTTGTGCTGAATATCGTGCAAATCACGGGTCCT
GATAGGCAAACTAAACAGTGACTGCTTGATTTGCTCTGAGGCAAGGGCTT
TCTATTTCTACCTCGAAACGAAAGGAGAGGAATAACGTACACATCAAGCT
GCGATTCGTGTTGACCATCCAGCTGCCCAATGGGAAAGACAGCACTTTCC
TCGCTGCGCAGTGCACTATTCTCCCTAGACATGTTGACGCAATCAGAGGG
CGACCTAGCTGTATTCAACGAACGGGCTCGACAAAAGCACCGTTTGCCAA
GGTAGCACGCTGTATATTGCATACTTCAAGACCCCACACACCACGGGTCG
ATTCGGCACTTCCAATAGCAGGATGCAGTCTTTTACGTTGGAAGGGCAGC
GTCGGCAGTATCTTTCGTCGAACGATTCCTACACCTCTTCCCGGTAACCT
CCGTGATTTTCGCAGTATCGAGCTAGGACATTCGGTCGAGGGGGCATGGT
GTCTGATGCGAATCACCTGCACGGAATCTTGCCCTTGCTAGGATTACAAC
CGGAACAATAGGAACAATACATACGGTATGTTGTAATCATGCCCAACCTA
GCTCAGCGGTGCATCATTCTTTACAGTATTACAACGTAGTAAGACACCAA
TTGTCTAAAGACATCCTGCCCATTCTGACTCAGCGGAGCATTAGGGACCG
GATTGTGTACCTCTCTGCATACATCAACCCATCTGTTGGGACTACCGATG
CGTGGGCCCTGCGCGTAACCTTTCGGTGGCCTTGACACATGATATCTTGC
GTCTCGTTCACCTTGATCGACTCGCAGGTTAGCGGGTACGACGTGTCTTC
CGTGAGCGGTGAAGAGGTGGTGGAGCTAAGCTCGTGGGCAGCAGAAACCA
CGAATGTTGGCCATGACAACAGCAGCAGTAGTGGAGCAAGAGTGCGGCAA
CGGAATCCACTGCGATGACCACCACTCGATTCATGACACACCGGAGGGTA
GACACAGGCTTACAATCGGATTTCGGAGCGAAGGGCTGTTTCCCAAGGGC
CGCCGCCGCGACCAGCGGCAGCCTCCGCCGATAGGAAAGTCGCTGGAAGA
GACTGTCCATGGGCACAAAGCCGTAAAAGTACCCTTGAATGTAGATTTCT
TTTGCCAGCTCACACCTGAAACATGGTACCTTTTTGGGGGGGGTGTTACG
TTTTTCGCTGCCGGAGTGCTACGAACAAAGTAGCACGCAGTGCTTGAGTT
TTTGTGGTGTCGTGTTGGGAGTGGCGGCGAAGCACAATCGCCTCGTTTAT
CTTGGAATACAGCAGTAGCAGACAGTCGAGGCTTGGATGGTAAAACAAAT
ATCACACATGTATTGCAGCACAAAACACCCTAGACGTTGATGGATGAGAG
CATTCCTTCGACCTCGAGACGGCCTCTCCTGGGCAGGAGAAGGCACGGAA
ACAGCA

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig889:20031..22736+

>mRNA_Ecto-sp9_F_contig889.17067.1 ID=mRNA_Ecto-sp9_F_contig889.17067.1|Name=mRNA_Ecto-sp9_F_contig889.17067.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1086bp|location=Sequence derived from alignment at Ecto-sp9_F_contig889:20031..22736+ (Ectocarpus species9 EcSCA_722f female)
ATGAAGAACAGCAGAACAGCAGTTGCTGGGAGTACGGCACGACTGAAGCC
GCCAGAGTGGGCCATCTTCATGGTGGCCGTAATGGCGGACCTCGTCTCTG
CTGCCGGACTCCTTCCCGTCGAACGCGTCTCACTCTTTCGAGGTCTGGCG
GTGTTCTTGCTGTACAGGGAGTGGGCGCTGGCTTTCGCCTACGGCTTCGT
TCTACCCCGGGTCGTGCCCTTGATCGCGGTGTGCTTCTTGAAGCATAAGT
GGAGGGCGTTTAAAATGAAGAACAGCAGAACAGCAGTTGCTGGGAGTACG
GCACGACTGAAGCCGCCAGAGTGGGCCATCTTCATGGTGGCCGTAATGGC
GGACCTCGTCTCTGCTGCCGGACTCCTTCCCGTCGAACGCGTCTCACTCT
TTCGAGGTCTGGCGGTGTTCTTGCTGTACAGGGAGTGGGCGCTGGCTTTC
GCCTACGGCTTCGTTCTACCCCGGGTCGTGCCCTTGATCGCGGTGTGCTT
CTTGAAGCATAAGTGGAGGGCGTTTAAAGCCTCCGCCCAGGAACGGTTGA
ACGCCTTGGCTGCGACTGCGAACGAGCGCGCGGGGGTCTCGACGAATGTT
CCGCACGCAGGCATGGGCGGGAACACATCTGCCCATCGAAATAGTCGGCA
TACTCAGGAAGGGGAGGCCTCCGCCCAGGAACGGTTGAACGCCTTGGCTG
CGACTGCGAACGAGCGCGCGGGGGTCTCGACGAATGTTCCGCACGCAGGC
ATGGGCGGGAACACATCTGCCCATCGAAATAGTCGGCATACTCAGGAAGG
GGAGGTTAGCGGGTACGACGTGTCTTCCGTGAGCGGTGAAGAGGTGGTGG
AGCTAAGCTCGTGGGCAGCAGAAACCACGAATGTTGGCCATGACAACAGC
AGCAGTAGTGGAGCAAGAGTGCGGCAACGGAATCCACTGCGATGAGTTAG
CGGGTACGACGTGTCTTCCGTGAGCGGTGAAGAGGTGGTGGAGCTAAGCT
CGTGGGCAGCAGAAACCACGAATGTTGGCCATGACAACAGCAGCAGTAGT
GGAGCAAGAGTGCGGCAACGGAATCCACTGCGATGA