mRNA_Ecto-sp9_F_contig889.17064.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig889.17064.1
Unique Name	mRNA_Ecto-sp9_F_contig889.17064.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig889.17064.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L4_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 3.090e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1

Query:    1 VAAFVAKNDNFVELVGDCYICLEPLLNNIGTTKFGVVSWRCRCTVPQKAHSACVFSKICHVANSQGTCDMCDSPMMFEKTRRKGTQATIRFHRDEERADDADPSSDSEEGESSG 342
            VAAFVAKNDNFVELVGDCYICLEPLLNNIGTTKFGVVSWRCRCTVPQKAHSACVFSKICHVANSQGTCDMCDSPMMFEKTRRKGTQATIRFHRDEERADDADPSSDSEEGESSG
Sbjct:   56 VAAFVAKNDNFVELVGDCYICLEPLLNNIGTTKFGVVSWRCRCTVPQKAHSACVFSKICHVANSQGTCDMCDSPMMFEKTRRKGTQATIRFHRDEERADDADPSSDSEEGESSG 169

[Close]

BLAST of mRNA_Ecto-sp9_F_contig889.17064.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF52_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 6.140e-48
Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 1

Query:    1 VAAFVAKNDNFVELVGDCYICLEPLLNNIGTTKFGVVSWRCRCTVPQKAHSACVFSKICHVANSQGTCDMCDSPMMFEKTRRKGTQATIRFHRDEERADDADPS 312
            +AAF  K+DNFVELV DCYICLEPLLNNIGTTKFGVVSWRCRCTVPQKAHS CVFSKICH +N QG CDMC SPM FEKT RKGT A IRFHRDE   + AD S
Sbjct:   17 IAAFAEKHDNFVELVEDCYICLEPLLNNIGTTKFGVVSWRCRCTVPQKAHSRCVFSKICHASNGQGKCDMCKSPMEFEKTTRKGTHAMIRFHRDETDKNAADSS 120

[Close]

BLAST of mRNA_Ecto-sp9_F_contig889.17064.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L3_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.050e-46
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 1

Query:    1 VAAFVAKNDNFVELVGDCYICLEPLLNNIGTTKFGVVSWRCRCTVPQKAHSACVFSKICHVANSQGTCDMCDSPMMFEKTRRKGTQATIRFHRDE 285
            +AAF  K+DNFVELV DCYICLEPLLNNIGTTKFGVVSW+CRCTVPQKAHS CVFSKICH  N QG CDMC+SPM FEKT RKGT A IRFHRDE
Sbjct:   61 IAAFAEKHDNFVELVEDCYICLEPLLNNIGTTKFGVVSWKCRCTVPQKAHSRCVFSKICHATNGQGKCDMCNSPMEFEKTTRKGTHAMIRFHRDE 155

[Close]

BLAST of mRNA_Ecto-sp9_F_contig889.17064.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D2_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.100e-8
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1

Query:  184 ANSQGTCDMCDSPMMFEKTRRKGTQATIRFHRDEER--ADDADPSSDSEEGESS 339
            A  +G CD+C SPM+FEKT RKG QAT++FHRDE+R  ADD+   SD E GE S
Sbjct:   19 ATGKGACDICGSPMVFEKTMRKGKQATLQFHRDEKRTDADDSSRGSDMESGEDS 72

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig889.17064.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig889.17064.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
Uncharacterized	3.090e-70	100.00	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L4...	[more]
Uncharacterized	6.140e-48	79.81	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.050e-46	83.16	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	1.100e-8	61.11	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig889	contig	Ecto-sp9_F_contig889:3069..5535 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-22_001940.1
Exons	2
Model size	1720
Cds size	459
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig889.17064.1	prot_Ecto-sp9_F_contig889.17064.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig889 3069..4276 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930942.1778934-CDS-Ecto-sp9_F_contig889:3068..3337	1622930942.1778934-CDS-Ecto-sp9_F_contig889:3068..3337	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig889 3069..3337 +
1692278959.3524354-CDS-Ecto-sp9_F_contig889:3068..3337	1692278959.3524354-CDS-Ecto-sp9_F_contig889:3068..3337	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig889 3069..3337 +
1622930942.196853-CDS-Ecto-sp9_F_contig889:4086..4276	1622930942.196853-CDS-Ecto-sp9_F_contig889:4086..4276	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig889 4087..4276 +
1692278959.361725-CDS-Ecto-sp9_F_contig889:4086..4276	1692278959.361725-CDS-Ecto-sp9_F_contig889:4086..4276	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig889 4087..4276 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930942.2089593-UTR-Ecto-sp9_F_contig889:4276..5535	1622930942.2089593-UTR-Ecto-sp9_F_contig889:4276..5535	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig889 4277..5535 +
1692278959.3710027-UTR-Ecto-sp9_F_contig889:4276..5535	1692278959.3710027-UTR-Ecto-sp9_F_contig889:4276..5535	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig889 4277..5535 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig889:3069..5535+
coding sequence from alignment at Ecto-sp9_F_contig889:3069..5535+

protein sequence of mRNA_Ecto-sp9_F_contig889.17064.1

>prot_Ecto-sp9_F_contig889.17064.1 ID=prot_Ecto-sp9_F_contig889.17064.1|Name=mRNA_Ecto-sp9_F_contig889.17064.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=153bp
VAAFVAKNDNFVELVGDCYICLEPLLNNIGTTKFGVVSWRCRCTVPQKAH
SACVFSKICHVANSQGTCDMCDSPMMFEKTRRKGTQATIRFHRDEERADD
ADPSSDSEEGESSGSESLSDVSNEDSNSSLSGSGLSNSESSSGSDSDDGD
DD*

mRNA from alignment at Ecto-sp9_F_contig889:3069..5535+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig889.17064.1 ID=mRNA_Ecto-sp9_F_contig889.17064.1|Name=mRNA_Ecto-sp9_F_contig889.17064.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2467bp|location=Sequence derived from alignment at Ecto-sp9_F_contig889:3069..5535+ (Ectocarpus species9 EcSCA_722f female)
GTTGCAGCTTTCGTGGCGAAGAACGACAACTTTGTCGAGCTGGTGGGCGA
TTGCTACATCTGTTTAGAGCCCCTTCTGAACAACATCGGCACAACCAAAT
TCGGAGTGGTCAGCTGGAGATGCCGCTGCACCGTACCTCAAAAGGCGCAC
TCGGCGTGCGTGTTCTCCAAAATTTGCCACGTGGCCAACTCGCAGGGTAC
ATGTGACATGTGCGACTCCCCAATGATGTTCGAGAAGACCAGACGGAAGG
GTACCCAGGCCACAATACGGTGAGGTTGCCGTTCAGCAATGGCCGTTTCT
GGCATGAGGCTGGTTTCGGCCATGCTGTAAGGATGGGGTGGATTTCCAAT
GTTGTAGATGCGGACATGGCGGGACGCCTTATCCCCGCAGTGGAGACATA
TCGAAAGTGCCCTCCGTGATGTTTTATTACATGATGACGCTTCCAATGAC
ACTCCATAGAACGGAAGTTGGAGATCTTGATTTGTATGAGTTGTGCGAAT
AATGGCCCATTGTAATTGCGTGGCCAATGGCTTTTCTAGCGGAGTGTGCC
TTCAGTGTGAACGAAGGCTGGGGAGTTGGCTTGGGGGCGTCCTTCTGTCG
ACGGTGTCATGTAGTCTGTTGTCGGATAGACAGTGTTCCCTGGTGCCGGG
GGAAAAGTGCCCCACGAGAAAACATCCCGTCCTACCAGATCGCGCCACAT
TGCACAGTTCCATTTATTTTCTTCTCAAGTGATTCCATCAGCATCGAAAA
GGTATTCTACGCCTCAACAAGACGATACAACAATGCCACAGCACCGCCAG
TAACCGACGCAACTCTAACGTCGGTATCCGATGTATTTGAGCTACGTTAG
GCCTACTGCTGTGGGTCTCGAAGGCGAGGAGATCACGACGAGTGAAGAGT
TGTTGTATGCGGCGTCGAAACTCCTCGAGCGACACCATCATGTTTTCGTC
ACTCCTGCGTATGACCCCTAGGCTCAAGCTGGCTGGCTACATATTCCGCT
CGATTAATAACTGCACAGATTTCACCGGGATGAGGAGCGGGCGGATGACG
CCGACCCAAGCAGTGACAGCGAAGAGGGGGAAAGCAGCGGCAGTGAGAGC
CTTTCCGACGTTAGCAACGAGGACAGCAACAGCAGTCTCAGTGGCAGCGG
TCTCAGCAACAGCGAAAGCTCGAGCGGATCTGACAGCGATGATGGGGACG
ACGACTAGTTAGCGCGATTACATTGACGCGGGAAACATTTTGTTTCGGAT
GTGTCTGCAAGGAGCAAGACGCCATTGCGCCGAAGTGCAGGCGTCGTTTG
GTGTTGAGGATAGTCGAAGGTGCAACTATGATGTTGCCGAGATGGGGAAG
CGCAGTCGACACTTCCAGCATGTAAATCTCTGCCGATACAATGGGAAAAT
TCTTGTGTACTGGTGCACCCTACAAACTTTGGATTTGGGTCATTCATATG
CTTGTAGACGGAAAGGCACGAGGATGAAGTATTTGGAGAGCCGGTTAAGG
AGAATGGAGGTTACCAACGATTGGTTCCCTGAGTGTAGCGACCCGTCACC
CTTTTTACTCCCCTCCGGTGTACCATGCGTGACAAGGAGTGATGAACGGG
GTCGAGACCAGGACAGTTGAGTCCGAACACCGAGTATGCGCCCAAGATGG
TGGGCGAGATCGAACAACGAGGGTGCAGAGGAGGGCGTGAGACACCCGCG
GTTTTCTTTTTTTGTGATACTCGGTTAACGGTGGTGGGGGGACGTGACAG
CGACCAACGATGAGGGGGAGTTGTGGGAGGATATGTTTGGGCGATGCACA
AGCGATGGTGTTTATTAGCTTCGCCGTGCAGCGCTTTAACTTATCGGTGG
TGAGGAGTACGTTCAGTTCAGAAACACGCTGTTTTGTGGTTGATGTCGAC
GTCGACAAGCAAGCGTTGCTGCTGCTCGGGGTGGAGTGCTCACAGGAGGT
GTTGCTGTTTCCGCGTTTTTTCTTCGCCGTTGTGGCAGTACTCTTGGGCA
CGTCCGAGATCGCGTTGTAGTGGGTCGGGGGGTGGTGGGACGGTTTCCAA
CTATGTGTGTACACTGGTGTTCCACAGACAACAACAGCAGTTCGCGTTGT
CGTGTTCTTTTTTGCGACCGTGTTGGTGGTATCCGTGACAACACTCCAGC
AGCACCGGCGCCAAAGGGAGCATTTTTTAAAGCTCATCTAGATGTAGATG
GTTGGTTATGGATTACAATGGCAGCGATGATGATGGCCAGATTCCTTTCT
TTTTTCGCCCGCAGGAGCAGCACCAAGAAAGACCCAAGGGCGCCAAATCC
AAAAGAATTGGGCAGTGTGGGAGCGCTGTGGACACCGGCGAAATAATAGG
CTGTAGGCTACGCATATATACTTTTCGCTTGTGAAGTCTACAACGTTTTT
CTATTGGCTAGATACCTCTCGTACCGCTGTACAGACAAAGCTGGACCTCG
TTGATTTATCTTCGGCC

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig889:3069..5535+

>mRNA_Ecto-sp9_F_contig889.17064.1 ID=mRNA_Ecto-sp9_F_contig889.17064.1|Name=mRNA_Ecto-sp9_F_contig889.17064.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp9_F_contig889:3069..5535+ (Ectocarpus species9 EcSCA_722f female)
GTTGCAGCTTTCGTGGCGAAGAACGACAACTTTGTCGAGCTGGTGGGCGA
TTGCTACATCTGTTTAGAGCCCCTTCTGAACAACATCGGCACAACCAAAT
TCGGAGTGGTCAGCTGGAGATGCCGCTGCACCGTACCTCAAAAGGCGCAC
TCGGCGTGCGTGTTCTCCAAAATTTGCCACGTGGCCAACTCGCAGGGTAC
ATGTGACATGTGCGACTCCCCAATGATGTTCGAGAAGACCAGACGGAAGG
GTACCCAGGCCACAATACGGTTGCAGCTTTCGTGGCGAAGAACGACAACT
TTGTCGAGCTGGTGGGCGATTGCTACATCTGTTTAGAGCCCCTTCTGAAC
AACATCGGCACAACCAAATTCGGAGTGGTCAGCTGGAGATGCCGCTGCAC
CGTACCTCAAAAGGCGCACTCGGCGTGCGTGTTCTCCAAAATTTGCCACG
TGGCCAACTCGCAGGGTACATGTGACATGTGCGACTCCCCAATGATGTTC
GAGAAGACCAGACGGAAGGGTACCCAGGCCACAATACGATTTCACCGGGA
TGAGGAGCGGGCGGATGACGCCGACCCAAGCAGTGACAGCGAAGAGGGGG
AAAGCAGCGGCAGTGAGAGCCTTTCCGACGTTAGCAACGAGGACAGCAAC
AGCAGTCTCAGTGGCAGCGGTCTCAGCAACAGCGAAAGCTCGAGCGGATC
TGACAGCGATGATGGGGACGACGACTAGATTTCACCGGGATGAGGAGCGG
GCGGATGACGCCGACCCAAGCAGTGACAGCGAAGAGGGGGAAAGCAGCGG
CAGTGAGAGCCTTTCCGACGTTAGCAACGAGGACAGCAACAGCAGTCTCA
GTGGCAGCGGTCTCAGCAACAGCGAAAGCTCGAGCGGATCTGACAGCGAT
GATGGGGACGACGACTAG