mRNA_Ecto-sp9_F_contig8888.17063.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8888.17063.1
Unique NamemRNA_Ecto-sp9_F_contig8888.17063.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8888.17063.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG3_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.480e-43
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 1 
Query:    1 EQLKAKEALGVSGNGVGGVREGGEGNGGKEGGDGSEVSPPPEMGLLDAVAAMILGRFPQDPRASSEEHFQKIAAMHQHMKDAWLEEFGRLPPMA 282
            EQLKAKEA G S NG+GGVREGG+GNGGKE GDGS VSPPPEMGLLDAVAAMILGR+PQDPR SSEEHFQKIAAMHQ MKDAWLEEFGRLPPMA
Sbjct:  687 EQLKAKEASGFSRNGIGGVREGGKGNGGKERGDGSGVSPPPEMGLLDAVAAMILGRYPQDPRVSSEEHFQKIAAMHQDMKDAWLEEFGRLPPMA 780
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BLAST of mRNA_Ecto-sp9_F_contig8888.17063.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J0_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 6.700e-39
Identity = 80/94 (85.11%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    1 EQLKAKEALGVSGNGVGGVREGGEGNGGKEGGDGSEVSPPPEMGLLDAVAAMILGRFPQDPRASSEEHFQKIAAMHQHMKDAWLEEFGRLPPMA 282
            EQLKAKEA GVSGNGVG VREG           GSEV+PPPEMGLLDAVAAMILGRFPQDPRASSEEHFQKIAAMHQHMKDAWLEEFGRLPPMA
Sbjct:  681 EQLKAKEASGVSGNGVGSVREGXXXXXXXXXXXGSEVTPPPEMGLLDAVAAMILGRFPQDPRASSEEHFQKIAAMHQHMKDAWLEEFGRLPPMA 774
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BLAST of mRNA_Ecto-sp9_F_contig8888.17063.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.370e-11
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:  133 LLDAVAAMILGRFPQDPRASSEEHFQKIAAMHQHMKDAWLEEFGRLP 273
            L+D VAAMILGR P++PRAS  EH Q +A  H  ++DAWL+EFGRLP
Sbjct:  112 LIDRVAAMILGRMPRNPRASDAEHLQYVAVCHARIRDAWLQEFGRLP 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8888.17063.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.480e-4389.36protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.700e-3985.11protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.370e-1163.83protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8888contigEcto-sp9_F_contig8888:1526..3306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue3.3e-35
Seed eggNOG ortholog2880.D7G4J0
EggNOG OGs2CZMF@1,2SAWM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size703
Cds size285
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8888.17063.1prot_Ecto-sp9_F_contig8888.17063.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8888 1943..3306 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.0857375-UTR-Ecto-sp9_F_contig8888:1525..19421622930942.0857375-UTR-Ecto-sp9_F_contig8888:1525..1942Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8888 1526..1942 -
1692278959.3072722-UTR-Ecto-sp9_F_contig8888:1525..19421692278959.3072722-UTR-Ecto-sp9_F_contig8888:1525..1942Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8888 1526..1942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.102971-CDS-Ecto-sp9_F_contig8888:1942..19871622930942.102971-CDS-Ecto-sp9_F_contig8888:1942..1987Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8888 1943..1987 -
1692278959.3190029-CDS-Ecto-sp9_F_contig8888:1942..19871692278959.3190029-CDS-Ecto-sp9_F_contig8888:1942..1987Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8888 1943..1987 -
1622930942.114587-CDS-Ecto-sp9_F_contig8888:2511..25881622930942.114587-CDS-Ecto-sp9_F_contig8888:2511..2588Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8888 2512..2588 -
1692278959.3284318-CDS-Ecto-sp9_F_contig8888:2511..25881692278959.3284318-CDS-Ecto-sp9_F_contig8888:2511..2588Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8888 2512..2588 -
1622930942.1311986-CDS-Ecto-sp9_F_contig8888:3143..33061622930942.1311986-CDS-Ecto-sp9_F_contig8888:3143..3306Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8888 3144..3306 -
1692278959.341178-CDS-Ecto-sp9_F_contig8888:3143..33061692278959.341178-CDS-Ecto-sp9_F_contig8888:3143..3306Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8888 3144..3306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8888.17063.1

>prot_Ecto-sp9_F_contig8888.17063.1 ID=prot_Ecto-sp9_F_contig8888.17063.1|Name=mRNA_Ecto-sp9_F_contig8888.17063.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=95bp
EQLKAKEALGVSGNGVGGVREGGEGNGGKEGGDGSEVSPPPEMGLLDAVA
AMILGRFPQDPRASSEEHFQKIAAMHQHMKDAWLEEFGRLPPMA*
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mRNA from alignment at Ecto-sp9_F_contig8888:1526..3306-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8888.17063.1 ID=mRNA_Ecto-sp9_F_contig8888.17063.1|Name=mRNA_Ecto-sp9_F_contig8888.17063.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1781bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8888:1526..3306- (Ectocarpus species9 EcSCA_722f female)
GAACAGCTAAAAGCCAAGGAGGCTTTAGGGGTTTCCGGCAACGGTGTTGG
TGGTGTGCGAGAGGGGGGAGAGGGGAATGGCGGAAAGGAGGGAGGGGATG
GGAGCGAGGTGTCCCCGCCTCCTGAGATGGGCCTCCTGGACGCGGTGGCA
GCTATGATTTTGGGTGAGAATTGCTGTTGTTGCGTGTAGTCGGTGTCGTT
GTCTTGGGAGACACGGGAACGTGTTAAACGAAGCTGGGCAAGTGACAAGT
CTTGTTCTTAAGTGTCCCTGTAGTCCTATTCGACCCTGCTTTATTCTTTC
GTCTCCCTGCTCCTCTCTGCTCATATTCACGGGTGCCTGTTGGTTTGGTT
TCCTTTGCTTGTGTTTTTTTCTTTCTCAACAGCGCCAAGAGCAAGCTCAC
GTCAGTTAACAGTTTTATGGTGTGATTTTGTATAGTCGAGTCACCATTTT
CTGCTGTTCCGTGCCGCCATCACCATCAAGAGTTTTGAACGCTCCTATGC
TTACTATCGTCACTATATTTTTTGTCAACAGGCGAAAAGAACGGAGGAAA
GGAAAATGTGTGAACTCAAGGCTTACGTACTCTTTTCTTTTGCGAGGAAG
GAAAGAAGCTGATCGATTTTATTCGTTCTTTGTTGTATCAAGACAAATGC
ATCACCTGTTTCCTACTTCATTTTTGGTGTTTTTTCCCTTGGTCCTTCGG
CTCCTTGCTGTTCGTCAGGCCGTTTTCCCCAAGACCCAAGGGCTAGCAGC
GAGGAACATTTCCAGAAGATCGCGGCCATGCACCAACACATGAAGGTACC
CTCCTCTTACCCTGTTTACAATTCAGGACTCATCCTGGCTTCGCTGGTGA
TGGTATTATGAACCTGAACACACGCCCAACACGTACGTGTACTTTTTTTT
TTGTAATAATATATCCCCGATCCTCATTGAAGGGTGTTTCCATACCGAGA
AATAGTTGCCAAGATATACCAGCTTTTTCGACTCGTATGCATACCTTCAC
CAAATCAATGGTTATGGTTCTTAGGAGAGTGTGGCCCACGCTATTTTAGA
AAATCAATCACATGGACGTACCAATTGTTACTGCTGTTGCTACTGCTGTG
CACTGGATTCCCGACGGCACACGCCTATCATGAGGGCGGTGTGGTGGTCT
GGTGTCACACACAGCGCTTAAACTACGGTTTCGTACCCCTGACCGTTACG
CTAGCCTTGCCACACCACGCGCATGAGCCCAACAATGCACGAAGACCATG
ACCGCTACTGCTGCGGCCGCTGCTACGTGTTTCGTGTTTCGTGCGCCCCA
CACCCTTCGTGCCCTGCAGGACGCGTGGCTGGAAGAGTTTGGACGACTTC
CTCCTATGGCTTGATCCAGCCAAAACGAGAGACCGCCTTTTGACTGTTAT
ATTGGCCCTCGTTACGAGCGGCGGCGTAGTGTCTGTGGGGGCATAGGGGG
AGACGAATGAGAGACTTGACCGTTTGCCACGATTTGTGGTCTCGAGGTGC
GTGCGATTGCTTGTATTCTAGTTGAGTAAATGACGCTTTTACCACAAGTG
TTGTCACTACTTGTATGTAAGGCGTGGCGTAAATTCAAGACACTCGTAGT
TTTATGCTGTATCTCTGAATGATAGCTGTCTGGGGAACCTGTGCGGCGGG
TCCGAGGTACTGGCATTGGGTTGTTATTATAGAAGCAGAAGACCACTACA
ATACTTGTGAAACCGTACTCTCTGTTGACTTCATCTGTACGTCAGTTGTT
GTCTTCACATTAAAAAACCGTTCCGATCTTT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8888:1526..3306-

>mRNA_Ecto-sp9_F_contig8888.17063.1 ID=mRNA_Ecto-sp9_F_contig8888.17063.1|Name=mRNA_Ecto-sp9_F_contig8888.17063.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8888:1526..3306- (Ectocarpus species9 EcSCA_722f female)
GAACAGCTAAAAGCCAAGGAGGCTTTAGGGGTTTCCGGCAACGGTGTTGG
TGGTGTGCGAGAGGGGGGAGAGGGGAATGGCGGAAAGGAGGGAGGGGATG
GGAGCGAGGTGTCCCCGCCTCCTGAGATGGGCCTCCTGGACGCGGTGGCA
GCTATGATTTTGGGAACAGCTAAAAGCCAAGGAGGCTTTAGGGGTTTCCG
GCAACGGTGTTGGTGGTGTGCGAGAGGGGGGAGAGGGGAATGGCGGAAAG
GAGGGAGGGGATGGGAGCGAGGTGTCCCCGCCTCCTGAGATGGGCCTCCT
GGACGCGGTGGCAGCTATGATTTTGGGCCGTTTTCCCCAAGACCCAAGGG
CTAGCAGCGAGGAACATTTCCAGAAGATCGCGGCCATGCACCAACACATG
AAGGCCGTTTTCCCCAAGACCCAAGGGCTAGCAGCGAGGAACATTTCCAG
AAGATCGCGGCCATGCACCAACACATGAAGGACGCGTGGCTGGAAGAGTT
TGGACGACTTCCTCCTATGGCTTGAGACGCGTGGCTGGAAGAGTTTGGAC
GACTTCCTCCTATGGCTTGA
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