mRNA_Ecto-sp9_F_contig8886.17062.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8886.17062.1
Unique NamemRNA_Ecto-sp9_F_contig8886.17062.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8886.17062.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS39_9PHAE)

HSP 1 Score: 546 bits (1406), Expect = 9.020e-183
Identity = 341/391 (87.21%), Postives = 345/391 (88.24%), Query Frame = 3 
Query:  162 MPDMDTPQISGILEEHAPXXXXXXXXXVVGVQQASKRPRDDGSPVRGKRGRGENGEISLSLKIPVPATSSSPSVPSSSSPASPPWVPPLCESPSKINQAPTPFAPYSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSRRKGRMPHAAPPSLGATDPIFHAALLRLLHSRNGDHCAEAVGWRWRGDTPARFDHWPCALHPSVMDLLACVSASEEQVVLTGCDKKHADSCNGXXXXXXXXXXXEAAWRAPRPRTPWAHRGESAAVAAGATTPIAAPXXXXXXXXXXXXXXXXXXXASSRRLPSKNRVRFSTHDMSVVDTPDPQRGGSAKGMMSALGGLESILSAGERIRELAARGPGNSGGRERGGFERRGGGGGRQYEGYFDRFSAA 1334
            MPDMDTPQISGI EE APXXXXXXXX VVGVQQASKRPRD+GSPVRGKRGRG NG+ISLSLKI VPATSSSP VPSSS PASP WVPPLCESPSKINQAP+PFA YS G XXXXXXXXXXXXXXXXXXXXXXXXX     TSRRKGRMPHAAPPSLGATDPIFHAALLRLLH RNGDHCAEAVGWRWRGDTPARFDHWPCALHPSVMDLLACVSASEEQVVLTGCDKKHA+SCNGXXXXXXXXXX EAAWRAPRPRTPWAHRG  AA AAG TTPIAAP     X              SSRRLPSKNRVRFSTHDMSVVDTPDPQRGGSAKGMMSALGGLESILSA ERIRELAA GPGNSGGRERGG ERRGG  GRQYEGYFDRFSAA
Sbjct:    1 MPDMDTPQISGIFEERAPXXXXXXXX-VVGVQQASKRPRDEGSPVRGKRGRGANGDISLSLKISVPATSSSPLVPSSSLPASPLWVPPLCESPSKINQAPSPFASYSSGAXXXXXXXXXXXXXXXXXXXXXXXXXASV--TSRRKGRMPHAAPPSLGATDPIFHAALLRLLHRRNGDHCAEAVGWRWRGDTPARFDHWPCALHPSVMDLLACVSASEEQVVLTGCDKKHAESCNGXXXXXXXXXX-EAAWRAPRPRTPWAHRGRPAAAAAGVTTPIAAPSPLPPXASAQTPLSALRRSGSSRRLPSKNRVRFSTHDMSVVDTPDPQRGGSAKGMMSALGGLESILSAAERIRELAAGGPGNSGGRERGGLERRGGDDGRQYEGYFDRFSAA 387
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BLAST of mRNA_Ecto-sp9_F_contig8886.17062.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ83_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 3.510e-105
Identity = 199/217 (91.71%), Postives = 200/217 (92.17%), Query Frame = 3 
Query:  603 MPHAAPPSLGATDPIFHAALLRLLHSRNGDHCAEAVGWRWRGDTPARFDHWPCALHPSVMDLLACVSASEEQVVLTGCDKKHADSCNGXXXXXXXXXXX-EAAWRAPRPRTPWAHRGESAAVAAGATTPIAAPXXXXXXXXXXXXXXXXXXXASSRRLPSKNRVRFSTHDMSVVDTPDPQRGGSAKGMMSALGGLESILSAGERIRELAARGPGNSG 1250
            MPHAAPPSLGATDPIFHAALLRLLHSRNGDHCAEAVGWRWRGDTPARFDHWPCALHPSVMDLLACVSASEEQVVLTGCDKKHADSC+GXXXXXXXXXXX EAAWRAPRPRTPWAHRG  AAV AGATT     XXXXXXXXXXXXXX      SSRRLPSKNRVRFSTHDMSVVDTPDPQRGGSAKGMMSALGGLESILSA ERIRELAA GPGNSG
Sbjct:    1 MPHAAPPSLGATDPIFHAALLRLLHSRNGDHCAEAVGWRWRGDTPARFDHWPCALHPSVMDLLACVSASEEQVVLTGCDKKHADSCHGXXXXXXXXXXXXEAAWRAPRPRTPWAHRGGPAAVPAGATTXXXXXXXXXXXXXXXXXXXALRRSGSSRRLPSKNRVRFSTHDMSVVDTPDPQRGGSAKGMMSALGGLESILSAAERIRELAAGGPGNSG 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8886.17062.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.020e-18387.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.510e-10591.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8886contigEcto-sp9_F_contig8886:3680..5629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1354
Cds size1191
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8886.17062.1prot_Ecto-sp9_F_contig8886.17062.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8886 4439..5629 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.0123749-UTR-Ecto-sp9_F_contig8886:3679..37831622930942.0123749-UTR-Ecto-sp9_F_contig8886:3679..3783Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8886 3680..3783 +
1692278959.273348-UTR-Ecto-sp9_F_contig8886:3679..37831692278959.273348-UTR-Ecto-sp9_F_contig8886:3679..3783Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8886 3680..3783 +
1622930942.028163-UTR-Ecto-sp9_F_contig8886:4381..44381622930942.028163-UTR-Ecto-sp9_F_contig8886:4381..4438Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8886 4382..4438 +
1692278959.284559-UTR-Ecto-sp9_F_contig8886:4381..44381692278959.284559-UTR-Ecto-sp9_F_contig8886:4381..4438Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8886 4382..4438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.0428624-CDS-Ecto-sp9_F_contig8886:4438..56291622930942.0428624-CDS-Ecto-sp9_F_contig8886:4438..5629Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8886 4439..5629 +
1692278959.2948656-CDS-Ecto-sp9_F_contig8886:4438..56291692278959.2948656-CDS-Ecto-sp9_F_contig8886:4438..5629Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8886 4439..5629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8886.17062.1

>prot_Ecto-sp9_F_contig8886.17062.1 ID=prot_Ecto-sp9_F_contig8886.17062.1|Name=mRNA_Ecto-sp9_F_contig8886.17062.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=397bp
MPDMDTPQISGILEEHAPPPAAGGGGGVVGVQQASKRPRDDGSPVRGKRG
RGENGEISLSLKIPVPATSSSPSVPSSSSPASPPWVPPLCESPSKINQAP
TPFAPYSGGAAAAKPPALAADDAAAPVAGPAAAAAAVASATSRRKGRMPH
AAPPSLGATDPIFHAALLRLLHSRNGDHCAEAVGWRWRGDTPARFDHWPC
ALHPSVMDLLACVSASEEQVVLTGCDKKHADSCNGGGGDDPPPPRREAAW
RAPRPRTPWAHRGESAAVAAGATTPIAAPSPLPPPASAQTPLSALRRSAS
SRRLPSKNRVRFSTHDMSVVDTPDPQRGGSAKGMMSALGGLESILSAGER
IRELAARGPGNSGGRERGGFERRGGGGGRQYEGYFDRFSAAAGGEPD
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mRNA from alignment at Ecto-sp9_F_contig8886:3680..5629+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8886.17062.1 ID=mRNA_Ecto-sp9_F_contig8886.17062.1|Name=mRNA_Ecto-sp9_F_contig8886.17062.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1950bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8886:3680..5629+ (Ectocarpus species9 EcSCA_722f female)
CACCCACAGGCAGCGAGAGCACGGACGAATCGACGTTCAACCTGCCACCC
TTCCTACCCGGCCACTACCGTACCCCGAGTCCAGTATCCCGGAGGAACGC
GTAGGTGGGCTATGAACCGCCGCCCCGGAAGCACGACTGGTAGAAGAGTA
GTCCCTCGAGCGGCTGTTTTTCTCCCCAGCGCGGCGTTGTGAAATTGGTC
TAAGGGCTCACGGGCTCACGGGCTCACGCCTCCACATTTCTGGTTAGACG
CACTCACACATCGGAACAAAGGGCGCACTTGAGCCGAAATTTGCTCTGGA
ACAACGTGCGCTAGCTTTCGTTACATCCGCGTCCGTCGCTCCTCGCGTTC
ACCCTTGGCACGATCGAAGCGGGTGGAGTGCTGATTAGACACGTCATAGG
GAACACATCGGAATTGCAGTGAAATACGTACCACCTCTCTTCTGCTGCTG
CTGTGCTGTGAGTCCACACGAGTGTTGTCTGTAGAGTCTTTGTCTTCTGT
TGGCTTGACACAGCAGTAGTCCGTGAGCTTTTAGCTTTTTACTCGACGGC
GTTGGGGCCTACCCCTTTTGCCCTCTACTGGATCACATCATCTCCATGCT
CTGCTGTGCTGCTGTGCTCGAAATCACACTTCGCGGAAAAGAAAATGCGT
GGCGCTCTCTGCTTTCCCCCCGCCCGTTTGTCTCTCCGTCGTTGTTGCGC
AGGGAGGCAGGCCGTGAAAACTTGCTGCTTGATATCGAGCGGACGGATTC
GACACAACAATGCCGGACATGGATACGCCCCAGATTTCAGGAATTTTAGA
AGAACACGCCCCGCCTCCGGCAGCTGGCGGCGGCGGCGGCGTTGTGGGCG
TCCAGCAGGCGTCCAAGCGCCCACGCGACGACGGCAGCCCCGTCCGCGGG
AAGCGCGGCAGGGGGGAGAACGGAGAAATCTCACTCAGCCTCAAGATCCC
GGTCCCGGCGACGTCTTCGTCGCCCTCGGTGCCGTCCTCCTCCTCGCCGG
CCTCCCCGCCGTGGGTGCCCCCCCTGTGCGAGTCGCCCTCCAAGATCAAC
CAGGCTCCGACCCCGTTCGCGCCGTACTCGGGCGGAGCCGCGGCGGCCAA
GCCCCCGGCTCTGGCGGCCGATGATGCCGCCGCCCCCGTAGCTGGCCCTG
CTGCTGCTGCTGCTGCTGTTGCTTCTGCGACGTCAAGGCGAAAGGGCCGC
ATGCCGCACGCCGCCCCGCCCTCCCTGGGCGCCACGGACCCCATCTTCCA
CGCCGCGCTGCTCCGGCTCCTGCACAGCAGGAACGGCGACCACTGCGCGG
AGGCCGTCGGGTGGAGGTGGAGAGGCGACACGCCGGCGCGGTTCGACCAC
TGGCCGTGCGCCCTTCACCCGTCCGTGATGGACCTGCTGGCGTGCGTGTC
GGCTAGCGAGGAGCAGGTTGTCCTGACCGGCTGCGACAAGAAACACGCCG
ATAGCTGCAACGGCGGTGGTGGTGACGACCCTCCCCCCCCGCGAAGAGAG
GCCGCCTGGCGGGCCCCTCGCCCTCGCACGCCGTGGGCGCACCGAGGAGA
GTCGGCGGCGGTAGCGGCGGGGGCCACGACGCCGATCGCCGCCCCATCGC
CGTTGCCACCCCCGGCCTCGGCTCAGACGCCGCTGTCCGCCCTTCGCAGG
TCGGCGAGCTCGCGCCGCCTGCCCAGCAAGAACCGCGTTCGTTTCTCTAC
CCACGACATGAGCGTGGTCGACACGCCGGATCCACAGCGGGGGGGCTCCG
CGAAAGGAATGATGAGCGCTCTTGGCGGCCTCGAATCCATCCTGTCTGCC
GGGGAACGGATCCGGGAGCTCGCAGCGAGAGGTCCCGGCAACAGCGGTGG
CAGAGAGAGGGGTGGTTTCGAGCGGCGCGGCGGCGGCGGTGGTCGGCAGT
ACGAGGGCTACTTCGATCGGTTCAGCGCCGCCGCCGGTGGTGAACCTGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8886:3680..5629+

>mRNA_Ecto-sp9_F_contig8886.17062.1 ID=mRNA_Ecto-sp9_F_contig8886.17062.1|Name=mRNA_Ecto-sp9_F_contig8886.17062.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2382bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8886:3680..5629+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGGACATGGATACGCCCCAGATTTCAGGAATTTTAGAAGAACACGC
CCCGCCTCCGGCAGCTGGCGGCGGCGGCGGCGTTGTGGGCGTCCAGCAGG
CGTCCAAGCGCCCACGCGACGACGGCAGCCCCGTCCGCGGGAAGCGCGGC
AGGGGGGAGAACGGAGAAATCTCACTCAGCCTCAAGATCCCGGTCCCGGC
GACGTCTTCGTCGCCCTCGGTGCCGTCCTCCTCCTCGCCGGCCTCCCCGC
CGTGGGTGCCCCCCCTGTGCGAGTCGCCCTCCAAGATCAACCAGGCTCCG
ACCCCGTTCGCGCCGTACTCGGGCGGAGCCGCGGCGGCCAAGCCCCCGGC
TCTGGCGGCCGATGATGCCGCCGCCCCCGTAGCTGGCCCTGCTGCTGCTG
CTGCTGCTGTTGCTTCTGCGACGTCAAGGCGAAAGGGCCGCATGCCGCAC
GCCGCCCCGCCCTCCCTGGGCGCCACGGACCCCATCTTCCACGCCGCGCT
GCTCCGGCTCCTGCACAGCAGGAACGGCGACCACTGCGCGGAGGCCGTCG
GGTGGAGGTGGAGAGGCGACACGCCGGCGCGGTTCGACCACTGGCCGTGC
GCCCTTCACCCGTCCGTGATGGACCTGCTGGCGTGCGTGTCGGCTAGCGA
GGAGCAGGTTGTCCTGACCGGCTGCGACAAGAAACACGCCGATAGCTGCA
ACGGCGGTGGTGGTGACGACCCTCCCCCCCCGCGAAGAGAGGCCGCCTGG
CGGGCCCCTCGCCCTCGCACGCCGTGGGCGCACCGAGGAGAGTCGGCGGC
GGTAGCGGCGGGGGCCACGACGCCGATCGCCGCCCCATCGCCGTTGCCAC
CCCCGGCCTCGGCTCAGACGCCGCTGTCCGCCCTTCGCAGGTCGGCGAGC
TCGCGCCGCCTGCCCAGCAAGAACCGCGTTCGTTTCTCTACCCACGACAT
GAGCGTGGTCGACACGCCGGATCCACAGCGGGGGGGCTCCGCGAAAGGAA
TGATGAGCGCTCTTGGCGGCCTCGAATCCATCCTGTCTGCCGGGGAACGG
ATCCGGGAGCTCGCAGCGAGAGGTCCCGGCAACAGCGGTGGCAGAGAGAG
GGGTGGTTTCGAGCGGCGCGGCGGCGGCGGTGGTCGGCAGTACGAGGGCT
ACTTCGATCGGTTCAGCGCCGCCGCCGGTGGTGAACCTGACATGCCGGAC
ATGGATACGCCCCAGATTTCAGGAATTTTAGAAGAACACGCCCCGCCTCC
GGCAGCTGGCGGCGGCGGCGGCGTTGTGGGCGTCCAGCAGGCGTCCAAGC
GCCCACGCGACGACGGCAGCCCCGTCCGCGGGAAGCGCGGCAGGGGGGAG
AACGGAGAAATCTCACTCAGCCTCAAGATCCCGGTCCCGGCGACGTCTTC
GTCGCCCTCGGTGCCGTCCTCCTCCTCGCCGGCCTCCCCGCCGTGGGTGC
CCCCCCTGTGCGAGTCGCCCTCCAAGATCAACCAGGCTCCGACCCCGTTC
GCGCCGTACTCGGGCGGAGCCGCGGCGGCCAAGCCCCCGGCTCTGGCGGC
CGATGATGCCGCCGCCCCCGTAGCTGGCCCTGCTGCTGCTGCTGCTGCTG
TTGCTTCTGCGACGTCAAGGCGAAAGGGCCGCATGCCGCACGCCGCCCCG
CCCTCCCTGGGCGCCACGGACCCCATCTTCCACGCCGCGCTGCTCCGGCT
CCTGCACAGCAGGAACGGCGACCACTGCGCGGAGGCCGTCGGGTGGAGGT
GGAGAGGCGACACGCCGGCGCGGTTCGACCACTGGCCGTGCGCCCTTCAC
CCGTCCGTGATGGACCTGCTGGCGTGCGTGTCGGCTAGCGAGGAGCAGGT
TGTCCTGACCGGCTGCGACAAGAAACACGCCGATAGCTGCAACGGCGGTG
GTGGTGACGACCCTCCCCCCCCGCGAAGAGAGGCCGCCTGGCGGGCCCCT
CGCCCTCGCACGCCGTGGGCGCACCGAGGAGAGTCGGCGGCGGTAGCGGC
GGGGGCCACGACGCCGATCGCCGCCCCATCGCCGTTGCCACCCCCGGCCT
CGGCTCAGACGCCGCTGTCCGCCCTTCGCAGGTCGGCGAGCTCGCGCCGC
CTGCCCAGCAAGAACCGCGTTCGTTTCTCTACCCACGACATGAGCGTGGT
CGACACGCCGGATCCACAGCGGGGGGGCTCCGCGAAAGGAATGATGAGCG
CTCTTGGCGGCCTCGAATCCATCCTGTCTGCCGGGGAACGGATCCGGGAG
CTCGCAGCGAGAGGTCCCGGCAACAGCGGTGGCAGAGAGAGGGGTGGTTT
CGAGCGGCGCGGCGGCGGCGGTGGTCGGCAGTACGAGGGCTACTTCGATC
GGTTCAGCGCCGCCGCCGGTGGTGAACCTGAC
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