mRNA_Ecto-sp9_F_contig8886.17060.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8886.17060.1
Unique NamemRNA_Ecto-sp9_F_contig8886.17060.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8886.17060.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ84_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 1.670e-85
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 3 
Query:    3 EQEGGDGQESIITLVEAHVTLVALLRSPSMCVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALEECSGEFFEGKRSKLRFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSWVRSTR 431
            EQEGGDGQESIITLVEAHVTLVALLRSPSMCVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALEECSGEFFEGKRSK+RFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSWVR TR
Sbjct:  665 EQEGGDGQESIITLVEAHVTLVALLRSPSMCVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVMLLCQGLEVLEALEECSGEFFEGKRSKMRFFEGDLSPVLTTLRGCHDKNTMHPVVYDACSWVRLTR 807
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8886.17060.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.670e-8598.60protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ84... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8886contigEcto-sp9_F_contig8886:712..3327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1146
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8886.17060.1prot_Ecto-sp9_F_contig8886.17060.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8886 1765..2615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.8932772-UTR-Ecto-sp9_F_contig8886:711..7401622930941.8932772-UTR-Ecto-sp9_F_contig8886:711..740Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8886 712..740 +
1692278959.1826415-UTR-Ecto-sp9_F_contig8886:711..7401692278959.1826415-UTR-Ecto-sp9_F_contig8886:711..740Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8886 712..740 +
1622930941.905764-UTR-Ecto-sp9_F_contig8886:1704..17641622930941.905764-UTR-Ecto-sp9_F_contig8886:1704..1764Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8886 1705..1764 +
1692278959.211473-UTR-Ecto-sp9_F_contig8886:1704..17641692278959.211473-UTR-Ecto-sp9_F_contig8886:1704..1764Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8886 1705..1764 +
1622930941.9605246-UTR-Ecto-sp9_F_contig8886:2615..33271622930941.9605246-UTR-Ecto-sp9_F_contig8886:2615..3327Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8886 2616..3327 +
1692278959.254701-UTR-Ecto-sp9_F_contig8886:2615..33271692278959.254701-UTR-Ecto-sp9_F_contig8886:2615..3327Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8886 2616..3327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.9213042-CDS-Ecto-sp9_F_contig8886:1764..19901622930941.9213042-CDS-Ecto-sp9_F_contig8886:1764..1990Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8886 1765..1990 +
1692278959.224218-CDS-Ecto-sp9_F_contig8886:1764..19901692278959.224218-CDS-Ecto-sp9_F_contig8886:1764..1990Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8886 1765..1990 +
1622930941.9402218-CDS-Ecto-sp9_F_contig8886:2496..26151622930941.9402218-CDS-Ecto-sp9_F_contig8886:2496..2615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8886 2497..2615 +
1692278959.236473-CDS-Ecto-sp9_F_contig8886:2496..26151692278959.236473-CDS-Ecto-sp9_F_contig8886:2496..2615Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8886 2497..2615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8886.17060.1

>prot_Ecto-sp9_F_contig8886.17060.1 ID=prot_Ecto-sp9_F_contig8886.17060.1|Name=mRNA_Ecto-sp9_F_contig8886.17060.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
MCVPGIGPDGEWPPAAKRLAKLAWAVAYRVRKAAGAVESSMALADDDVML
LCQGLEVLEALEECSGEFFEGKRSKLRFFEGDLSPVLTTLRGCHDKNTMH
PVVYDACSWVRSTR*
back to top

mRNA from alignment at Ecto-sp9_F_contig8886:712..3327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8886.17060.1 ID=mRNA_Ecto-sp9_F_contig8886.17060.1|Name=mRNA_Ecto-sp9_F_contig8886.17060.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2616bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8886:712..3327+ (Ectocarpus species9 EcSCA_722f female)
GAGAGCAAGAAGGAGGCGACGGTCAGGAGGTGGGTAAACACTGGTCGAGT
TGGCTGTTGCGGCAACGATGGGGGAGAGGAGGGGACGATTGCTTGTTGCT
GTTGTTGTATCGCACTAGCAACAGTTGTGACCTCTACAGTGCAGTGCACA
GCAGTACCCCTGTTGCCTGCTGCTGTAGGATTTCGAACGGTGCAGACTCG
AACTTTGAAGGTGCGGGGTGGTTTGCGCTTCCGCCCCAAGCGCGTGAGAC
GGAGCGGGTTATTACACAGAGCGGCGAGCTTCGTTTTGCACGCGACCCGC
CTCAACTTTTCATCAACAGCATTAGTGTTGTATACTCTGCGCAGTGCGGA
CGAACGCACAAGTGTCCGATCGATTTGGACAGCTCGGTTGCTCCACAACC
AGGACGTCGCCAATGCTAAAGAGAGAGTGACTTTGGAAATATCTCATGGA
CAGAGAGCTCTCCCTACACGTGTCGGTCGGGTTTCGATAGCACCTCATAC
CTTCTTACCCTCTTACCCTTTCGGTTGTGGAGCAATCAGTCTTTTCAACA
AGCAATGGCGCCAACGTGAGTCTTGTCGGTGGAGCAATCAATCTTTTCAA
CCATCGATCGCGCCAATGTGAGTTCGCCACCACTTCTACCCTCGAGACTC
TGCCTCGTTCACGTTTCTCGAGCTACCCTAGGCCCGGGCCAGGTACGCAC
AGCTATGGTCCCTTCTGTCCTCCCCACGCGTTCCACTCCACTCCGCGACC
TATCTATCCCACGCTCCAGTCCATTCCGTTTGGTCCCGTTACAACCCGTC
TCACGCTGTCCCACTCCATTGTGTACAATGTCAACCCAACCCATTCCGTC
TCTTTTTCTTGTTTCATCCTAGTCCATCCAATCCCACCCCATTTCCACCC
CATCCCATCCCTTTCCGTCCCATTGTACCCTAGTCCATCAACTTCCATCC
AATTCCTTCCTATTCCACCCTGTTCCATCCCGTTCCGTCCCAGTCGATCA
TCACTCTCGTGGAAGCCCACGTGACCCTAGTCGCGCTGCTGAGGTCGCCC
AGCATGTGCGTTCCCGGCATCGGCCCGGACGGCGAGTGGCCTCCGGCGGC
TAAGCGCCTGGCCAAGCTGGCCTGGGCGGTAGCCTACCGCGTCAGGAAGG
CCGCGGGGGCGGTGGAGTCTTCCATGGCTCTCGCCGACGATGACGTCATG
CTGCTGTGCCAGGGCCTGGAGGTGCTGGAGGCCCTTGAGGAGTGCTCGGG
CGAGTTCTTCGAGGGAAAGCGGTCGAAACGTGAGCGCCACGGAGGAGAGG
TTTTTTTTTGCTTGGGCGTCGGCGGCATGTTTTGGTTTGCTGCGTATGTA
TGGTACCATGGTGTACTTCAAATTACAGAGTTTTGTTTTCTTCGTGCAGA
AGTGTTGGTGCGGAGAGTTTTTTTTTTTTTCCCTTTGCCGCGACGGCTTT
GTCCAAGGGTAAACTCGTTTTGTAGATACACAGTATTTGACAATTGTATC
GTAAATTTCCAACCGCTGTGAGAGGTTTTTACTTTGAGGGCCTCCCGTCC
CTCCACTTTTATTCCGTTCAACCCAGGACAGTGTTGCATCCCGGCCTGGT
TGCTGTTGCAAACCTTCGGCGTGCATTTCGTCTTCTCTCGCCCTTATTTC
GTATTCTTGTGGATGAATCTTTCGCGGCACTTTACAACTACCGCTTGTAA
TTTGCCCCCCCCCCCCCGCACCCCCTGTCCGCTCTTCCTCTGTTCACCGT
TTCATTCGTTTGTTTCGCCCCTCCTACTTACTCAGTGCGGTTCTTCGAGG
GAGACTTGTCCCCGGTTTTGACAACCCTCCGGGGCTGCCACGACAAGAAT
ACCATGCACCCTGTTGTTTACGACGCATGCTCGTGGGTTCGGTCAACGAG
ATAGTGTTGTTGTTGTCGGTGGTGCTGGTGCGATCACGGGGCTCGGTTGC
ATGTTTTTTTTAAATTAATCCTTCTGGAACGAGCCCCGTGCGTGTTGTTC
TTTAAGTGATCCTTGATGGAAGAAGGCCCTGGTGGCTGCGGGGCCGTTCG
TTTAGGGGTGAGTTCTTGCCATTCCAGGCGACGCGAGTGCTTGGGCGCGA
TGATGATGGATGCTATGTAGACGAGCCAGGTGTCTGCTTGTGATTGCGTG
GATGACTTTAGCTGCGGATGCTTGTAACCTCTGCCGGCAATCAAAAGAGG
TGGATGAAATGCGGTTGAGACAAAGCGGTGGATGAAAGGTGGTTGAGAGA
GCGAGAGAGCGCGGACATTGAGAACGGTGAAAACGGAGATGATTGTGTGT
TGATTGTTGCCGCTGTCAAATGTAAACGACAGCTTCCTTGCTACGAACAG
GGGCGGATTTCATGTCGACTCGTGGAGGTCTACATGTCGACTAGCCACCG
TTGACTACCATACGCGTCGATGCTGACTGTTGTAAGTACGTTCGTTCGTG
GTCAGTAAGATGGGACACACCGTTTGGTAGGACTGGCTGTATCCGGTGTT
CTGGCAAATCCAGTAACGGGAGTCTACATGTACATGCTACCGACTGAAAT
AGGAATGCGGCAATCCCCTCGAACATTGAACAAGACTGAAATGACGACCC
TCGAGGTAAACACGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8886:712..3327+

>mRNA_Ecto-sp9_F_contig8886.17060.1 ID=mRNA_Ecto-sp9_F_contig8886.17060.1|Name=mRNA_Ecto-sp9_F_contig8886.17060.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8886:712..3327+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCGTTCCCGGCATCGGCCCGGACGGCGAGTGGCCTCCGGCGGCTAA
GCGCCTGGCCAAGCTGGCCTGGGCGGTAGCCTACCGCGTCAGGAAGGCCG
CGGGGGCGGTGGAGTCTTCCATGGCTCTCGCCGACGATGACGTCATGCTG
CTGTGCCAGGGCCTGGAGGTGCTGGAGGCCCTTGAGGAGTGCTCGGGCGA
GTTCTTCGAGGGAAAGCGGTCGAAACATGTGCGTTCCCGGCATCGGCCCG
GACGGCGAGTGGCCTCCGGCGGCTAAGCGCCTGGCCAAGCTGGCCTGGGC
GGTAGCCTACCGCGTCAGGAAGGCCGCGGGGGCGGTGGAGTCTTCCATGG
CTCTCGCCGACGATGACGTCATGCTGCTGTGCCAGGGCCTGGAGGTGCTG
GAGGCCCTTGAGGAGTGCTCGGGCGAGTTCTTCGAGGGAAAGCGGTCGAA
ACTGCGGTTCTTCGAGGGAGACTTGTCCCCGGTTTTGACAACCCTCCGGG
GCTGCCACGACAAGAATACCATGCACCCTGTTGTTTACGACGCATGCTCG
TGGGTTCGGTCAACGAGATAGTGCGGTTCTTCGAGGGAGACTTGTCCCCG
GTTTTGACAACCCTCCGGGGCTGCCACGACAAGAATACCATGCACCCTGT
TGTTTACGACGCATGCTCGTGGGTTCGGTCAACGAGATAG
back to top