mRNA_Ecto-sp9_F_contig8885.17059.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8885.17059.1
Unique NamemRNA_Ecto-sp9_F_contig8885.17059.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8885.17059.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Claviceps purpurea (strain 20.1) TaxID=1111077 RepID=M1WCN6_CLAP2)

HSP 1 Score: 68.9 bits (167), Expect = 2.090e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:  100 LSYRPALFSGGFADQAKKVTEEAMAILRHFGPPSYFVTATCNTEWPEIKDNLHAGQTACDRAELCARVLK 309
            ++  P+ F+G      + + + AMAI+R FGPP++F+T T N +WPEIKDNL  GQ A DR +L ARV +
Sbjct:  805 MTILPSSFTGSDRHMGQ-LYQNAMAIVREFGPPTFFITFTANPKWPEIKDNLLPGQQANDRPDLIARVFR 873
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BLAST of mRNA_Ecto-sp9_F_contig8885.17059.1 vs.
Match: ATP-dependent (DNA helicase n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8G4L3_OCTBM)

HSP 1 Score: 67.0 bits (162), Expect = 9.710e-11
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  130 GFADQAKKVTEEAMAILRHFGPPSYFVTATCNTEWPEIKDNLHAGQTACDRAELCARV 303
            G A   ++  ++A+AI+R FGPP  F+T TCN  WPEI++NL  GQTA  R +L ARV
Sbjct:  470 GSARNMREQYQDALAIVRKFGPPDIFLTMTCNPNWPEIQNNLFPGQTASSRPDLVARV 527
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BLAST of mRNA_Ecto-sp9_F_contig8885.17059.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Rhabditophanes sp. KR3021 TaxID=114890 RepID=A0A1I8C5S8_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 1.340e-10
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:  160 EEAMAILRHFGPPSYFVTATCNTEWPEIKDNLHAGQTACDRAELCARVLK 309
            ++ MAI+  FG P++F+T TCN  WPEIKDNL  GQ A DR +L ARV K
Sbjct:  738 QDCMAIVLKFGKPTFFITMTCNPNWPEIKDNLLLGQKASDRPDLIARVFK 787
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BLAST of mRNA_Ecto-sp9_F_contig8885.17059.1 vs.
Match: uncharacterized (protein LOC110684972 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B788C5F)

HSP 1 Score: 65.9 bits (159), Expect = 2.420e-10
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  112 PALFSGGFADQAKKVTEEAMAILRHFGPPSYFVTATCNTEWPEIKDNLHAGQTACDRAELCARVLK 309
            P  + GG  D  K+    AMA+++ FG P  FVT TCN  WPEIK  L AG+TA DR +L AR+ +
Sbjct:  403 PPTYIGGPRDMKKRYLS-AMALVQRFGKPDLFVTITCNVNWPEIKAELAAGETAQDRPDLVARIFR 467
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BLAST of mRNA_Ecto-sp9_F_contig8885.17059.1 vs.
Match: Helitron_like_N (domain-containing protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HAB2_ARAVE)

HSP 1 Score: 65.9 bits (159), Expect = 2.460e-10
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:  112 PALFSGGFADQAKKVTEEAMAILRHFGPPSYFVTATCNTEWPEIKDNLHAGQTACDRAELCARVLKQ 312
            P+ F+G    Q  +  ++AM  +R +G P  F+T TCN+ WPEIK+ L  GQTA DR +L ARV +Q
Sbjct:  485 PSTFTGS-PRQMHEYAQDAMTYVRSYGRPDLFITFTCNSAWPEIKEELSHGQTATDRHDLLARVFRQ 550
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BLAST of mRNA_Ecto-sp9_F_contig8885.17059.1 vs.
Match: uncharacterized (protein LOC110696338 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B7731B8)

HSP 1 Score: 65.9 bits (159), Expect = 2.470e-10
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  112 PALFSGGFADQAKKVTEEAMAILRHFGPPSYFVTATCNTEWPEIKDNLHAGQTACDRAELCARVLK 309
            P  + GG  D  K+    AMA+++ FG P  FVT TCN  WPEIK  L AG+TA DR +L AR+ +
Sbjct:   64 PPTYIGGPRDMKKRYLN-AMALVQRFGKPDLFVTITCNANWPEIKAELAAGETAQDRPDLVARIFR 128
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BLAST of mRNA_Ecto-sp9_F_contig8885.17059.1 vs.
Match: uncharacterized (protein LOC110731425 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B77B424)

HSP 1 Score: 65.5 bits (158), Expect = 3.280e-10
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  112 PALFSGGFADQAKKVTEEAMAILRHFGPPSYFVTATCNTEWPEIKDNLHAGQTACDRAELCARVLK 309
            P  F GG  D  K+    AMA+++ +G P++FVT TCN  WPEIK  L  G+TA DR  L AR+ +
Sbjct:  338 PPTFIGGPRDMKKRYLN-AMALVQRYGKPNFFVTMTCNANWPEIKAELSPGETAQDRPNLVARIFR 402
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BLAST of mRNA_Ecto-sp9_F_contig8885.17059.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163JIA2_ABSGL)

HSP 1 Score: 65.5 bits (158), Expect = 3.380e-10
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  112 PALFSGGFADQAKKVTEEAMAILRHFGPPSYFVTATCNTEWPEIKDNLHAGQTACDRAELCARV 303
            P+ FSGG     ++V ++ +AI+RH G PS F+T TCN  WPEIK  L  GQ+A DR ++ +RV
Sbjct:  194 PSSFSGG-PRYMRQVLQDGLAIVRHKGQPSLFITMTCNPAWPEIKQALPPGQSATDRPDITSRV 256
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BLAST of mRNA_Ecto-sp9_F_contig8885.17059.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7RYN9_9FUNG)

HSP 1 Score: 65.5 bits (158), Expect = 3.410e-10
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  112 PALFSGGFADQAKKVTEEAMAILRHFGPPSYFVTATCNTEWPEIKDNLHAGQTACDRAELCARV 303
            P+ F+GG     K++ ++ +AI+R  G P+ F+T TCN +WPEI   LH GQ A DR ++CARV
Sbjct:  506 PSSFTGG-PRYMKQMLQDGLAIIRQRGNPTLFITFTCNPKWPEIVAELHPGQKAYDRPDICARV 568
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BLAST of mRNA_Ecto-sp9_F_contig8885.17059.1 vs.
Match: uncharacterized (protein LOC118646104 n=1 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI001746BE46)

HSP 1 Score: 65.1 bits (157), Expect = 4.520e-10
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  160 EEAMAILRHFGPPSYFVTATCNTEWPEIKDNLHAGQTACDRAELCARV 303
            ++AMAI+R +G P +F+T TCN  W EIK+NL  GQ   DR +LCARV
Sbjct:  133 QDAMAIVRKYGKPDFFITMTCNPNWREIKENLLPGQQTADRPDLCARV 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8885.17059.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ATP-dependent2.090e-1147.14DNA helicase n=1 Tax=Claviceps purpurea (strain 20... [more]
ATP-dependent9.710e-1151.72DNA helicase n=2 Tax=Octopus TaxID=6643 RepID=A0A0... [more]
ATP-dependent1.340e-1058.00DNA helicase n=1 Tax=Rhabditophanes sp. KR3021 Tax... [more]
uncharacterized2.420e-1048.48protein LOC110684972 n=1 Tax=Chenopodium quinoa Ta... [more]
Helitron_like_N2.460e-1046.27domain-containing protein n=1 Tax=Araneus ventrico... [more]
uncharacterized2.470e-1048.48protein LOC110696338 n=1 Tax=Chenopodium quinoa Ta... [more]
uncharacterized3.280e-1046.97protein LOC110731425 n=1 Tax=Chenopodium quinoa Ta... [more]
ATP-dependent3.380e-1048.44DNA helicase n=1 Tax=Absidia glauca TaxID=4829 Rep... [more]
ATP-dependent3.410e-1046.88DNA helicase n=1 Tax=Mucor circinatus TaxID=205415... [more]
uncharacterized4.520e-1056.25protein LOC118646104 n=1 Tax=Monomorium pharaonis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8885contigEcto-sp9_F_contig8885:1876..2693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.9
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog5111.M1WCN6
EggNOG free text desc.Helitron helicase-like domain at N-terminus
EggNOG OGs21DC6@147550,38G2J@33154,3NTVV@4751,3R14Z@4890,COG0507@1,KOG0987@2759
COG Functional cat.D
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size312
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8885.17059.1prot_Ecto-sp9_F_contig8885.17059.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8885 1876..2693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.7683048-CDS-Ecto-sp9_F_contig8885:1875..19591622930941.7683048-CDS-Ecto-sp9_F_contig8885:1875..1959Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8885 1876..1959 -
1692278959.1294856-CDS-Ecto-sp9_F_contig8885:1875..19591692278959.1294856-CDS-Ecto-sp9_F_contig8885:1875..1959Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8885 1876..1959 -
1622930941.793953-CDS-Ecto-sp9_F_contig8885:2101..22041622930941.793953-CDS-Ecto-sp9_F_contig8885:2101..2204Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8885 2102..2204 -
1692278959.140739-CDS-Ecto-sp9_F_contig8885:2101..22041692278959.140739-CDS-Ecto-sp9_F_contig8885:2101..2204Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8885 2102..2204 -
1622930941.8127227-CDS-Ecto-sp9_F_contig8885:2568..26931622930941.8127227-CDS-Ecto-sp9_F_contig8885:2568..2693Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8885 2569..2693 -
1692278959.149782-CDS-Ecto-sp9_F_contig8885:2568..26931692278959.149782-CDS-Ecto-sp9_F_contig8885:2568..2693Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8885 2569..2693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8885.17059.1

>prot_Ecto-sp9_F_contig8885.17059.1 ID=prot_Ecto-sp9_F_contig8885.17059.1|Name=mRNA_Ecto-sp9_F_contig8885.17059.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=104bp
HITKTSTARHYTTIRRCHGYQDPSRQHLPQPIELSYRPALFSGGFADQAK
KVTEEAMAILRHFGPPSYFVTATCNTEWPEIKDNLHAGQTACDRAELCAR
VLKQ
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mRNA from alignment at Ecto-sp9_F_contig8885:1876..2693-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8885.17059.1 ID=mRNA_Ecto-sp9_F_contig8885.17059.1|Name=mRNA_Ecto-sp9_F_contig8885.17059.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=818bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8885:1876..2693- (Ectocarpus species9 EcSCA_722f female)
CACATAACCAAGACAAGTACCGCACGTCATTACACCACAATTCGGCGTTG
TCACGGATACCAAGATCCCTCGCGACAACATCTGCCCCAGCCGATAGAGT
TATCATACCGTCCAGCTTTATTTAGGCGCCATCCGCAACTGACCGTCATG
GATTTTTTTTGGGGGGGGGATGGTGGTGAACCATCCCCGGCTAACGTCTG
AAAAATGTATGACACACTACCCCGGGCATGTAAATGTTGAATTATCTCTT
TTTTATTTTCTCAATATTACTGTTTTTGACCGGGTTTCAACTCATTTTCC
ATTTTTCACCAAGGAATTTCGCAAACGCAAAACCCGGGGATGGGCCTGAA
ACATCCCCGCTTTTGAAAAGTGCTCAGATTGATCTGAAAATTTCAGGGTA
GGGTAATTTATGGGTGGGGATTACGAATCCGCCGTCAGACTTTCCAAATT
CATTCATCGATGACGGTCAGTTGCGGATGGCGCCTTTAGCGGTGGGTTTG
CGGATCAGGCGAAAAAAGTCACGGAGGAGGCGATGGCCATCTTACGACAC
TTCGGCCCGCCGTCGTATTTCGTTACGGCCACATGCAACACTGTGAGTGG
ACACGGATTATTCGTATAATTAGTATTGTTTTTCTCGATATATTAGATAG
ATGTATTTGCTGCCCCTATACCACTCTCCTTTGCTTCCATGATAAATATC
GCTTTACTCACCTCCCTTATTGTTATCAAAACAGGAGTGGCCGGAGATCA
AGGACAACTTACATGCCGGACAAACCGCATGCGACCGGGCCGAACTGTGC
GCACGTGTTCTCAAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8885:1876..2693-

>mRNA_Ecto-sp9_F_contig8885.17059.1 ID=mRNA_Ecto-sp9_F_contig8885.17059.1|Name=mRNA_Ecto-sp9_F_contig8885.17059.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8885:1876..2693- (Ectocarpus species9 EcSCA_722f female)
CACATAACCAAGACAAGTACCGCACGTCATTACACCACAATTCGGCGTTG
TCACGGATACCAAGATCCCTCGCGACAACATCTGCCCCAGCCGATAGAGT
TATCATACCGTCCAGCTTTATTTAGCACATAACCAAGACAAGTACCGCAC
GTCATTACACCACAATTCGGCGTTGTCACGGATACCAAGATCCCTCGCGA
CAACATCTGCCCCAGCCGATAGAGTTATCATACCGTCCAGCTTTATTTAG
CGGTGGGTTTGCGGATCAGGCGAAAAAAGTCACGGAGGAGGCGATGGCCA
TCTTACGACACTTCGGCCCGCCGTCGTATTTCGTTACGGCCACATGCAAC
ACTCGGTGGGTTTGCGGATCAGGCGAAAAAAGTCACGGAGGAGGCGATGG
CCATCTTACGACACTTCGGCCCGCCGTCGTATTTCGTTACGGCCACATGC
AACACTGAGTGGCCGGAGATCAAGGACAACTTACATGCCGGACAAACCGC
ATGCGACCGGGCCGAACTGTGCGCACGTGTTCTCAAGCAGGAGTGGCCGG
AGATCAAGGACAACTTACATGCCGGACAAACCGCATGCGACCGGGCCGAA
CTGTGCGCACGTGTTCTCAAGCAG
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