mRNA_Ecto-sp9_F_contig8881.17056.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8881.17056.1
Unique NamemRNA_Ecto-sp9_F_contig8881.17056.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8881.17056.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM91_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 8.320e-89
Identity = 212/297 (71.38%), Postives = 216/297 (72.73%), Query Frame = 1 
Query:    1 MVLGHGVQAATTASRGESAGVKRTAVEDVLAALSMETSEGSIPDPSKHLRQRSKMHEVEMDENKVVMHTRRGSTAVGVTPSDPSAIVDLFQEVESIGDTYLPPDETDSEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTPVQMVEPAWGSGGDPQAPRPYWPTDEEAAGVASGEGGAVVALGGKDGGVEANGKR-RTRWSRRSIKIGSRWDATSRGCMETHI 888
            MVLGHGVQAATTASRGESAGVKRTAVEDVLAALSMETSEGSIPDPSKHLRQRSKMHEVEMDENKVVMHTRRGSTAVGVTPSDPSAIVDLFQEVESIG TYLPPDETDSE                                                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +D+   MVEPAWGSGGDPQAPRPYWPTDEEAAGVASGEGGAVV LGGK+GGVEANGK    RWSRRSIKIGS     S GC E  +
Sbjct:    1 MVLGHGVQAATTASRGESAGVKRTAVEDVLAALSMETSEGSIPDPSKHLRQRSKMHEVEMDENKVVMHTRRGSTAVGVTPSDPSAIVDLFQEVESIGSTYLPPDETDSE--------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNADSASSMVEPAWGSGGDPQAPRPYWPTDEEAAGVASGEGGAVVMLGGKEGGVEANGKSGEPRWSRRSIKIGS-----SVGCGEQRL 230
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BLAST of mRNA_Ecto-sp9_F_contig8881.17056.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI7_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 2.270e-72
Identity = 235/269 (87.36%), Postives = 239/269 (88.85%), Query Frame = 1 
Query:    1 MVLGHGVQAATTASRGESAGVKRTAVEDVLAALSMETSEGSIPDPSKHLRQRSKMHEVEMDENKVVMHTRRGSTAVGVTPSDPSAIVDLFQEVESIGDTYLPPDETDSEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTPVQMVEPAWGSGGDPQAPRPYW-PTDEEAAGVASGEGGAVVALGGKDGGVEANGK 804
            MVLGHGVQAATTA    SAGVKRTAVEDVLAALSMETSEGSIPDPSKH+RQRSKMHEVEMDENKVVMHTRRGSTAVGVTPSDPSAIVDLFQEVESIG TYLPPDETDSE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 XXXXXXXXXXXXXXXSD+P QMVEPAWGSGGDPQAP+PYW PTDEEAAGVASGEGGAVVALGG +GG EAN K
Sbjct:    1 MVLGHGVQAATTAGGDASAGVKRTAVEDVLAALSMETSEGSIPDPSKHVRQRSKMHEVEMDENKVVMHTRRGSTAVGVTPSDPSAIVDLFQEVESIGSTYLPPDETDSE---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQKHRVGVAGKLWAQQEXXXXXXXXXXXXXXXSDSPAQMVEPAWGSGGDPQAPKPYWRPTDEEAAGVASGEGGAVVALGGTEGGGEANRK 266
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8881.17056.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.320e-8971.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Protein2.270e-7287.36kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8881contigEcto-sp9_F_contig8881:201..3399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size896
Cds size894
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8881.17056.1prot_Ecto-sp9_F_contig8881.17056.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8881 201..3399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.5481682-CDS-Ecto-sp9_F_contig8881:200..2901622930941.5481682-CDS-Ecto-sp9_F_contig8881:200..290Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8881 201..290 -
1692278959.0662565-CDS-Ecto-sp9_F_contig8881:200..2901692278959.0662565-CDS-Ecto-sp9_F_contig8881:200..290Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8881 201..290 -
1622930941.5902743-CDS-Ecto-sp9_F_contig8881:492..10031622930941.5902743-CDS-Ecto-sp9_F_contig8881:492..1003Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8881 493..1003 -
1692278959.075687-CDS-Ecto-sp9_F_contig8881:492..10031692278959.075687-CDS-Ecto-sp9_F_contig8881:492..1003Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8881 493..1003 -
1622930941.6075325-CDS-Ecto-sp9_F_contig8881:1398..15381622930941.6075325-CDS-Ecto-sp9_F_contig8881:1398..1538Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8881 1399..1538 -
1692278959.0852964-CDS-Ecto-sp9_F_contig8881:1398..15381692278959.0852964-CDS-Ecto-sp9_F_contig8881:1398..1538Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8881 1399..1538 -
1622930941.6267788-CDS-Ecto-sp9_F_contig8881:3246..33991622930941.6267788-CDS-Ecto-sp9_F_contig8881:3246..3399Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8881 3247..3399 -
1692278959.0954702-CDS-Ecto-sp9_F_contig8881:3246..33991692278959.0954702-CDS-Ecto-sp9_F_contig8881:3246..3399Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8881 3247..3399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8881.17056.1

>prot_Ecto-sp9_F_contig8881.17056.1 ID=prot_Ecto-sp9_F_contig8881.17056.1|Name=mRNA_Ecto-sp9_F_contig8881.17056.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=298bp
MVLGHGVQAATTASRGESAGVKRTAVEDVLAALSMETSEGSIPDPSKHLR
QRSKMHEVEMDENKVVMHTRRGSTAVGVTPSDPSAIVDLFQEVESIGDTY
LPPDETDSEDEDSSHNKAADAAAATAAASSDPPGQQQQSNADSASSVGST
TNEQQHHASSDENSVSAPAAATAAAAAGDSQKHRVGAAGKLWAQQEQEPE
SSMSSPPPPPPSDTPVQMVEPAWGSGGDPQAPRPYWPTDEEAAGVASGEG
GAVVALGGKDGGVEANGKRRTRWSRRSIKIGSRWDATSRGCMETHIVR
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mRNA from alignment at Ecto-sp9_F_contig8881:201..3399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8881.17056.1 ID=mRNA_Ecto-sp9_F_contig8881.17056.1|Name=mRNA_Ecto-sp9_F_contig8881.17056.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3199bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8881:201..3399- (Ectocarpus species9 EcSCA_722f female)
ATGGTGCTCGGGCATGGCGTCCAGGCTGCAACTACGGCCAGCAGGGGTGA
ATCAGCTGGAGTGAAGCGCACTGCGGTAGAGGATGTCCTGGCAGCTTTGA
GCATGGAGACGTCTGAGGGAAGCATACCCGACCCATCCAAGCATTTGAGA
CAGGTGAGTGCGGATCCTCGTGCGACATGTTTGGGGTCGTGGCCTTGGTG
TATGTAGAGGCAGCGCGCTCTTTAGTTAAAAAATTCGTAGGTGTGCCGCC
GCTGCTGCTGCTTGCTGCTGCTGCTGGGTGCTGTTGCATGCGTTTTCTTT
CGCGCATCACACATCAACCCGCCGGAAACATCAAGCGACGAGCAGCGCGT
GCTTCCAGGGCTCCTTGTTTTGTGCCAGGAAAATTGAGGTACGGAGCTTG
TTGATCTCGACTGGTACGCGCACAGCCGCCGGTCCAATACAGGAGACCAA
AAGCGCACTAACAACTGCGGCCGGTAGCTATATAGCATCGTCGTATGGCT
GAATGATACCGCACACCGCAGGTTATTTTGGTTCTTCCACGCTTGGTTCT
TCATACTGTGCGGTAAAAGGAGCGACCTTACCCCCTTCCTGGCTTACCCC
TCGTGCCCAACCATACACCTACTAGATTGGCCCCTGTGCGGAACGGTTGG
GTAATTGTTTGAAACACAGGGTGCTTGAGCAATACAAGTGGTCCACGTAT
TTGCCCGAAGATGGGGAACGACATGTCACATGCAGTTGTGATATTTTAAC
ATTTTAGCCGCCCGTGTCGGTGTTTCTCACGTCTACTTTATTTTTTTTGC
TGTCTCTCCTTCTTTTCCGACAAAAAAAGACTCTTTTCTTTTCGATAGAG
GTGGATTCGTTGAATCATACCACTTCTGCTTCGTACTGCTGTTGTGAGAA
AAAAAAAAAAAGTAATGTAATTTTTGCGTGGTACTGCTGTAAAAGTTGTG
CAACGGGCGTATGATGGATGAACCCACAGACCGCCTACACCTACATACAA
GCGGGGGGAGCTTTTTATTTTGCTCTTTTTTTTAAATACGCGCTGGGACG
AGGACGGACTTGTTCGCGGAGAGTACGTGTAATATGCATCACATCAACCA
ACGACTCTGGCTTGCTCTCCCGGACTAATGCCCCGCCGCCGCCGCGGTGG
AGTAGTTTTGCACGTTGTTGGGCCCTCTGGTAGAGGTGGCGTGACCACTC
TTGATGGCGTCACCAGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGTATCCATGTTGATTCGCCCTGTACGCCAACAGCACGATG
TTTTGGACTCGACTCGGATGGTTGAAAAATGGAACCGAAGCTGCTGTTTG
GCGACATTTTCTGGCAAAAATCGGCCTCGTTTTGACAAGCAGTAGCTGTC
AGGTTCTCGCCCGGCCTCCTCTGGGAAATCGATTAATGGATAGATGATGA
GGAGAGTGAGCGAGAGAGGGAAGAGGTGCTCTTCGCCTGGTGAAAGAATC
GACAGCATATGAACAAAGAATAGAGAGAGAAGAGGAAGAAACTACAACGC
GTATTCACCCATCCTATCTTGGTTCGCCGTCCCTGCACGTACGCCAACAG
CCCATCAGGTTCGGCCGAAATTTCCTTTGGAACCGCAGTGTGTTCATCAC
TGCACTCCCTCCCGTGCTATCTACCATCTGTGGGAAACCATCACCGGACC
ACCTGGCGAACGGTTTTCTTACCGCTGATTCGACCCCGTGTTTCTTCGGT
CCCTGTCCATTTATACTTGTAGCTCTCTTGTGCAGCCCTCGATCTATCTA
ACCCTTTCCTCGCCCGCGATGTGCCGTGTTGAACGAAAAACGACGACGAC
GCCGAACGCAGAGGAGCAAGATGCACGAGGTGGAGATGGACGAGAACAAG
GTGGTGATGCACACACGGCGGGGCAGCACAGCAGTCGGCGTGACCCCCAG
CGACCCCTCCGCCATCGTAGACCTCTTTCAAGAGGTGGAGTCTATCGGTG
AGTGGCGTGTGGTACAAGGCGGACAGAGACCGCCGTAGATACACCACATG
GCAGGACTGAGGCCACAAGAAGGGCGCCCTGGTAAAGGTTGTAGCGCGCC
TGGGTGGCGTGAGGAAAGATCCTCAGAGCGCCGCGCTATCACGATAGTTG
GACGTCAACAGGGCATGAGAATTTCACGAGTACATACAAGTACGCCCCCC
CAACTCTGCACAGCAGCACCCCGCCATTGAGAAACCTCAACTCCAACTCG
TCGAGACACCTTTTCCCAAGAGAGATATTTTTTTTTCGTGTTCCTTCCTC
TCTCGGCTACATGTGCCGCCGTCCTCGCTCTGAAAGCGTGCACGAGAAAC
ATGGCAACCAACCCCTCCGTCCCGTTCCCCCTCCGGCCTCAGGGAGCACC
TACTTGCCGCCAGACGAGACCGACTCCGAGGACGAAGATAGCAGCCACAA
CAAGGCCGCCGACGCTGCCGCCGCCACCGCCGCAGCCTCGAGCGACCCGC
CGGGGCAACAGCAGCAGTCGAACGCCGACTCGGCGTCATCGGTGGGCTCC
ACCACAAACGAGCAGCAGCACCACGCCTCCTCCGACGAGAACAGCGTCTC
CGCACCGGCAGCAGCAACAGCAGCAGCAGCAGCGGGAGATTCGCAGAAGC
ACAGGGTGGGCGCCGCGGGAAAGCTCTGGGCGCAGCAGGAGCAGGAACCC
GAGTCGTCCATGTCGTCGCCGCCTCCGCCGCCGCCGTCCGACACCCCCGT
CCAGATGGTAGAGCCGGCCTGGGGATCGGGCGGGGATCCGCAGGCCCCAA
GACCGTATTGGCCCACTGACGAGGAGGCGGCGGGGGTGGCTTCGGGCGAG
GGGGGCGCTGTGGTTGCGCTCGGTGGGAAGGACGGGGGAGTCGAGGCAAA
CGGGAAGGTGTGACAGGCAGATACGCAAAAAAACGATTGCCGTATCTAGT
AGCAAGCGTTCCCCTTTGTGTCGAAAGCGGTGCATGGGGTGAACGGTTTT
GAGGAACCAAGGAACCGAACGGGGGCGCGAAATTTCAACACACACTCCAA
CGCCGTATTCCCATTCGTGTGTGCCCTTGTCGGTCTGCACCTTGCACCTC
TGAATAGAGCGGAGAACCCGCTGGAGCAGAAGGTCGATTAAAATTGGGTC
TCGGTGGGATGCGACGAGCAGAGGCTGCATGGAAACTCACATCGTCAGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8881:201..3399-

>mRNA_Ecto-sp9_F_contig8881.17056.1 ID=mRNA_Ecto-sp9_F_contig8881.17056.1|Name=mRNA_Ecto-sp9_F_contig8881.17056.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1788bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8881:201..3399- (Ectocarpus species9 EcSCA_722f female)
ATGGTGCTCGGGCATGGCGTCCAGGCTGCAACTACGGCCAGCAGGGGTGA
ATCAGCTGGAGTGAAGCGCACTGCGGTAGAGGATGTCCTGGCAGCTTTGA
GCATGGAGACGTCTGAGGGAAGCATACCCGACCCATCCAAGCATTTGAGA
CAGATGGTGCTCGGGCATGGCGTCCAGGCTGCAACTACGGCCAGCAGGGG
TGAATCAGCTGGAGTGAAGCGCACTGCGGTAGAGGATGTCCTGGCAGCTT
TGAGCATGGAGACGTCTGAGGGAAGCATACCCGACCCATCCAAGCATTTG
AGACAGAGGAGCAAGATGCACGAGGTGGAGATGGACGAGAACAAGGTGGT
GATGCACACACGGCGGGGCAGCACAGCAGTCGGCGTGACCCCCAGCGACC
CCTCCGCCATCGTAGACCTCTTTCAAGAGGTGGAGTCTATCGGTGAAGGA
GCAAGATGCACGAGGTGGAGATGGACGAGAACAAGGTGGTGATGCACACA
CGGCGGGGCAGCACAGCAGTCGGCGTGACCCCCAGCGACCCCTCCGCCAT
CGTAGACCTCTTTCAAGAGGTGGAGTCTATCGGTGACACCTACTTGCCGC
CAGACGAGACCGACTCCGAGGACGAAGATAGCAGCCACAACAAGGCCGCC
GACGCTGCCGCCGCCACCGCCGCAGCCTCGAGCGACCCGCCGGGGCAACA
GCAGCAGTCGAACGCCGACTCGGCGTCATCGGTGGGCTCCACCACAAACG
AGCAGCAGCACCACGCCTCCTCCGACGAGAACAGCGTCTCCGCACCGGCA
GCAGCAACAGCAGCAGCAGCAGCGGGAGATTCGCAGAAGCACAGGGTGGG
CGCCGCGGGAAAGCTCTGGGCGCAGCAGGAGCAGGAACCCGAGTCGTCCA
TGTCGTCGCCGCCTCCGCCGCCGCCGTCCGACACCCCCGTCCAGATGGTA
GAGCCGGCCTGGGGATCGGGCGGGGATCCGCAGGCCCCAAGACCGTATTG
GCCCACTGACGAGGAGGCGGCGGGGGTGGCTTCGGGCGAGGGGGGCGCTG
TGGTTGCGCTCGGTGGGAAGGACGGGGGAGTCGAGGCAAACGGGAAGCAC
CTACTTGCCGCCAGACGAGACCGACTCCGAGGACGAAGATAGCAGCCACA
ACAAGGCCGCCGACGCTGCCGCCGCCACCGCCGCAGCCTCGAGCGACCCG
CCGGGGCAACAGCAGCAGTCGAACGCCGACTCGGCGTCATCGGTGGGCTC
CACCACAAACGAGCAGCAGCACCACGCCTCCTCCGACGAGAACAGCGTCT
CCGCACCGGCAGCAGCAACAGCAGCAGCAGCAGCGGGAGATTCGCAGAAG
CACAGGGTGGGCGCCGCGGGAAAGCTCTGGGCGCAGCAGGAGCAGGAACC
CGAGTCGTCCATGTCGTCGCCGCCTCCGCCGCCGCCGTCCGACACCCCCG
TCCAGATGGTAGAGCCGGCCTGGGGATCGGGCGGGGATCCGCAGGCCCCA
AGACCGTATTGGCCCACTGACGAGGAGGCGGCGGGGGTGGCTTCGGGCGA
GGGGGGCGCTGTGGTTGCGCTCGGTGGGAAGGACGGGGGAGTCGAGGCAA
ACGGGAAGCGGAGAACCCGCTGGAGCAGAAGGTCGATTAAAATTGGGTCT
CGGTGGGATGCGACGAGCAGAGGCTGCATGGAAACTCACATCGTCAGACG
GAGAACCCGCTGGAGCAGAAGGTCGATTAAAATTGGGTCTCGGTGGGATG
CGACGAGCAGAGGCTGCATGGAAACTCACATCGTCAGA
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