mRNA_Ecto-sp9_F_contig8880.17055.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8880.17055.1
Unique NamemRNA_Ecto-sp9_F_contig8880.17055.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8880.17055.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD07_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.220e-50
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 1 
Query:    4 AYWGYWIVLFVTTILTWIFAVAAAADDAWI-DEISIALGEECSGDDMCGLYKAATAFQYLATIVISFVLVMVVVAAFMPAPVTGKLGLAVGIMLFVFALFELIAFCTFAAFIYE 342
            AYWGYWIVLFVTTI TWIFAVAAAADDAWI D     LGE C G D CGLYKAATAFQYLATIV+S VLVMVVVAAF PAPVTGKLGLAVGIMLFVFA+FEL+AFCT+AA+I E
Sbjct:    5 AYWGYWIVLFVTTIFTWIFAVAAAADDAWIADAYEAGLGESCDGYDFCGLYKAATAFQYLATIVVSVVLVMVVVAAFTPAPVTGKLGLAVGIMLFVFAVFELLAFCTYAAYIEE 118
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BLAST of mRNA_Ecto-sp9_F_contig8880.17055.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH1_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 3.960e-29
Identity = 80/169 (47.34%), Postives = 99/169 (58.58%), Query Frame = 1 
Query:   16 YWIVLFVTTILTWIFAVAAAADDAWIDEIS---IALGEECS-GDDMCGLYKAATAFQYLATIVISFVLVMVVVAAFMPAPVTGKLGLAVGIMLFVFALFELIAFCTFAAFIYELEDSLYSYFSSAYSFDYSPGPTLAVAVVAFIFGLVGAIVTCVLRNKATAEQDGPFR 510
            YW V F T I TW+FAVAAA+DDAW+       + LGE C      C  YK  TAFQ+ A IVIS  +V+++VAAF PAP TG+LG A G ML VF++ +L AF   AA    L     +YF          GPT+ VAV+A++FGL G     +LR  AT  QDGP R
Sbjct:   49 YWAVCFATAI-TWLFAVAAASDDAWLQFEGYPLLKLGERCEFSASFCDYYKTGTAFQFFAAIVISATVVVMIVAAFKPAPATGRLGAAAGTMLLVFSVLQLAAFSIMAASAGRLNRDNDNYFQI------KAGPTIGVAVIAWVFGLAGGSAILLLRPHATPGQDGPLR 210
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BLAST of mRNA_Ecto-sp9_F_contig8880.17055.1 vs.
Match: WW (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.340e-14
Identity = 64/170 (37.65%), Postives = 91/170 (53.53%), Query Frame = 1 
Query:   52 WIFAVAAAADDAW--IDEISIALGEE-----C-SGDDMCGLYKAATAFQYLATIVISFVLVMVVVAAFMPAP-----VTGKLGLAVGIMLFVFALFELIAFCTFAAFIYELEDSLYSYFSSAYSFDYSP-GPTLAVAVVAFIFGLVGAIVTCVLRNKATAEQDGPFRACM 519
            W+FAVAA+ADD W  ID   I  G+E     C S DD+C LYKA TA Q++A +V+S  +V+  +A F PA          L +A G ++  FA FE++AF      I  +E  L   F++ + F  +  G T  +AVVA + G+V A+        A +  DGPF  C+
Sbjct:   89 WVFAVAASADDKWAKIDGFDIGAGDEDILDDCDSSDDVCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVL----IIVIEKELDGEFNTGFGFGEADLGATFGLAVVAVVLGVVQAVSVLTF---ARSSGDGPFFKCL 251
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BLAST of mRNA_Ecto-sp9_F_contig8880.17055.1 vs.
Match: PARP (catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ4_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 9.630e-8
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 QAYWGYWIVLFVTTILTWIFAVAAAADDAWIDEISIALGEEC-SGDDMCGLYKAATAFQYLATIVISFVLVMVVVAAF 231
            Q YW  W+VL  +T+LTWI AV AAA D W    + +LG+EC  G   C  Y  ATAFQY+AT+  S  ++++ ++AF
Sbjct:   12 QVYW--WVVL--STVLTWILAVVAAAADTWFQGGNFSLGDECYGGGGFCARYATATAFQYIATLACSVAVLLLALSAF 85
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8880.17055.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW08_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.290e-7
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 QAYWGYWIVLFVTTILTWIFAVAAAADDAWIDEISIALGEEC-SGDDMCGLYKAATAFQYLATIVISFVLVMVVVAAF 231
            + YW  W+VL  +T+LTWI AV AAA D W    + +LG+EC  G   C  Y  ATAFQY+AT+  S  ++++ ++AF
Sbjct:   12 EVYW--WVVL--STVLTWILAVVAAAADTWFQSGNFSLGDECYGGGGFCARYATATAFQYIATLACSAAVLLLALSAF 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8880.17055.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized2.220e-5083.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.960e-2947.34protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
WW1.340e-1437.65domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
PARP9.630e-846.15catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Uncharacterized1.290e-744.87protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8880contigEcto-sp9_F_contig8880:2506..5550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_006660.1
Exons3
Model size1371
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8880.17055.1prot_Ecto-sp9_F_contig8880.17055.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8880 3217..5412 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.4332097-UTR-Ecto-sp9_F_contig8880:2505..32161622930941.4332097-UTR-Ecto-sp9_F_contig8880:2505..3216Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8880 2506..3216 -
1692278959.0124593-UTR-Ecto-sp9_F_contig8880:2505..32161692278959.0124593-UTR-Ecto-sp9_F_contig8880:2505..3216Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8880 2506..3216 -
1622930941.5044081-UTR-Ecto-sp9_F_contig8880:5412..55501622930941.5044081-UTR-Ecto-sp9_F_contig8880:5412..5550Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8880 5413..5550 -
1692278959.0566804-UTR-Ecto-sp9_F_contig8880:5412..55501692278959.0566804-UTR-Ecto-sp9_F_contig8880:5412..5550Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8880 5413..5550 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.4523585-CDS-Ecto-sp9_F_contig8880:3216..35331622930941.4523585-CDS-Ecto-sp9_F_contig8880:3216..3533Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8880 3217..3533 -
1692278959.021979-CDS-Ecto-sp9_F_contig8880:3216..35331692278959.021979-CDS-Ecto-sp9_F_contig8880:3216..3533Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8880 3217..3533 -
1622930941.4725957-CDS-Ecto-sp9_F_contig8880:3969..41611622930941.4725957-CDS-Ecto-sp9_F_contig8880:3969..4161Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8880 3970..4161 -
1692278959.0309868-CDS-Ecto-sp9_F_contig8880:3969..41611692278959.0309868-CDS-Ecto-sp9_F_contig8880:3969..4161Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8880 3970..4161 -
1622930941.4877756-CDS-Ecto-sp9_F_contig8880:5399..54121622930941.4877756-CDS-Ecto-sp9_F_contig8880:5399..5412Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8880 5400..5412 -
1692278959.042881-CDS-Ecto-sp9_F_contig8880:5399..54121692278959.042881-CDS-Ecto-sp9_F_contig8880:5399..5412Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8880 5400..5412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8880.17055.1

>prot_Ecto-sp9_F_contig8880.17055.1 ID=prot_Ecto-sp9_F_contig8880.17055.1|Name=mRNA_Ecto-sp9_F_contig8880.17055.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=174bp
MCGLYKAATAFQYLATIVISFVLVMVVVAAFMPAPVTGKLGLAVGIMLFV
FALFELIAFCTFAAFIYELEDSLYSYFSSAYSFDYSPGPTLAVAVVAFIF
GLVGAIVTCVLRNKATAEQDGPFRACMPNAKAGGSPSSAPPAAAGVATAS
AVPQPGAAPAGTKVSQYPAVGTV*
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mRNA from alignment at Ecto-sp9_F_contig8880:2506..5550-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8880.17055.1 ID=mRNA_Ecto-sp9_F_contig8880.17055.1|Name=mRNA_Ecto-sp9_F_contig8880.17055.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3045bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8880:2506..5550- (Ectocarpus species9 EcSCA_722f female)
CAGGCTTATTGGGGCTACTGGATTGTCTTGTTCGTCACCACGATCCTCAC
CTGGATCTTCGCCGTGGCCGCAGCAGCGGATGACGCTTGGATCGACGAAA
TCTCCATTGCTCTTGGAGAGGAATGCAGCGGCGACGACATGTGCGGTCTG
TGTGAGTACAGCAGTACATACCAACGTGTCGACACATTCGATCATGAACG
GAAGGAACCCCACACAAAAGCTGTCATGATGCATACGGATAGTCATGTGC
TGTGTCAGACTGCTGTGCCTTCTATCCGTTTCAACCCCCTTCTTCCTTTC
CATCTGTTGCACTGCAGCAGTTGCACTATAGCAGTTACGTAGCGCCCGAC
CTTTCAACTTGGTAGCCTCAAGGAATAGAACTTGAGCACCATTTGTGAGC
TCGGTTAAGAACCACTACACTAAAACGTATATAGCGGCCATTCGTAGCAT
GACCCTAGGAATACGGTAAGAACCCCGACCTCGCCCGAAACTATAATAAT
AGAGGTTCTTGAGTGGTGGCGCGTTCTGTACAGCAGCAGTAGCTCGAGGC
GTGTTTGTGGTGTTGCATTCTGCGCTCTAAGATTAAGGTGTCAAATTTTG
ATTTTGATAGTTCACGGAGAGCACGAACTCTAACTATTTCAGTATTGCGT
ACAGCCGTAGGACATCGCACTGCACGATCGGACTGATATGAGGGCGAGGA
CTCGTTGTGTGAGGAACATGAATAAATGGATGTGATGTGACTCGCACAGC
TGGTTGCTTGGTGTTCCTGCTGATGGGAGCTGGAAGTAAAGTAGGAATAC
AACTCCTCTTGCTCTAATCTCACACAGGTTGATTGCTGCCACGCACCAAC
ACAACACACCGCTGCTCCGCCCTGTACCCGCAGTGCACTTTCGTAGTTGT
ACTAGTTACGAAGGTATGGATTAAACCAATGCCCACAGCAGCGCTCGGCC
CCCCGCCCCGTGTGATTGTGAATGTGAAGGTATCCCCTGTCAGCGGTGTG
AGTTGGGCGTGTTTCGAGGTGCATTGTATCGCTCCGTGGTTGGTTGTAGT
TGTGTCGCTCTTAATGGTGCCATGTAGGTGTAGCACGCGTCGGACTGTCT
TGTGGGCGGAGCTCGGCACCGAAGAGACGAAGAGACACGGCACTGCTGGT
GTGTTCGTTGGTGGCAGTGATACGCATACAAGTGTCGGTGTCATTCAGTT
TTCCTTGGCAGGGATTGGAAAACAAAGCTTCGGTTGTGTCGTCGCCGACA
ACGAATCCTAACATAGGCCGAGATCGGCTGTAACCCAACGACAGCAACAG
TGTTGGTAGTCTCCCCTCCCCCTGTCGCTGTGGGCCGTCCTTCTTCCTTT
CCGCCCTAATGCAATCGCCACCTGCCTGAACCTCCTCAGATAAAGCCGCG
ACGGCATTCCAGTACTTGGCTACGATCGTGATCAGCTTTGTTCTGGTGAT
GGTGGTGGTCGCGGCCTTTATGCCGGCTCCCGTTACCGGAAAGCTTGGGC
TCGCCGTGGGGATCATGCTGTTCGTCTTCGCCTTGTTCGAGCTCATCGCC
TTCTGCACCTTTGCTGCCTTCATCTACGAACGTGCGATCATGAACCAGTC
CAGTCCAATATTTGTTGCGTTGTGAAGTAATTGTCAAGTTTCGCGGGGCA
CAAGGCCAGCAAGCCAATGCCCTAGACACAAGAAGCCGTCTAATAGTGTT
TGACGTATATACATGGGCTGTCCTGCTACGAGCAAGAGGAAGAATAAGAG
TGTCTCCTTCAGCAGTAGCGGATGTAGCGGTACATGCAGGGAGAGAGAAA
GCTCGCGTGGACACTATTATTGTAGCCCTACAGGCAGTTGCTCGAGCGCT
TGAAGCAGTGGTAGCAAGCACGCGACATTTGCCGCAGAGAACTTACTCGC
GTACCAATCCGATCCATCTCGTGTCAGTGAAGGAACGAAAATTGATTTGT
GTCCTTGATCCCTCCCCACACGCCTCCCTCCCTCCTGTTGCTCCCTGCCG
CGGTCGACCCCACCCAGTCGAGGATTCGTTGTATTCCTACTTCTCCAGTG
CCTACTCCTTCGACTACTCCCCTGGTCCTACCCTTGCCGTAGCCGTCGTT
GCTTTCATCTTTGGCTTGGTGGGCGCCATCGTGACCTGCGTTCTGCGCAA
CAAGGCAACGGCCGAACAAGACGGTCCTTTCAGGGCGTGCATGCCTAACG
CAAAGGCGGGCGGTTCGCCTTCGTCGGCTCCCCCGGCTGCTGCTGGTGTT
GCGACTGCGAGTGCGGTACCCCAGCCAGGCGCCGCGCCTGCGGGAACCAA
GGTTTCTCAATACCCTGCCGTCGGGACAGTGTAGGTGCTGAAAACGTGCA
ATCTTGGGTCTTCGATAGACCAATGCTGGTATACGGGTCAGCGTGGAAGG
CATCCCGTCGTGTATTATACTGAAGACGAGAGCATGTGGGCTGCCTTGCT
GGCAAAAGTGTGAGCCACATGTATGCCTCAGCCTCCCCCCCCCCCCCCTC
TCGGTGGACAGCACGAGAGCCCTCTCTTTCCGGGACCCTGCATGTATTAT
GTGTTTGTGTAGCAGTCGCCGCAGAAACGACGCACTCTTTTTACTTTTTC
GTGATGGATGTTTTACAACGAATCTGCCTTGAGTTGTCCTTCTCACTGCA
ACCACAACCCGTTCTTCTCCTGTCAGTATCGTTATTTCGTTATTTACTAC
AAAAGTAATGGGTGAATACCTGCGGTGCCGTGTTCCTTGCTGTGATGGGG
TGGGTGCCTTTCTTTTCTGCGGCAAAGGGGGCTATCGAATCACCGAATCG
CACGGGCGATTTGAACCCCCCTTCCCCCTGTGTTCTTGTAGTGTATGCAT
AAGGTGCAACATCTAGAGTAGAACGACTCGTCGTGCTTTGCCGTGCCTCT
TGCTCTTGAAGCGTTTACGCAGTGGCTTGCATTTTGGCCAGCGGCGCTTT
GACGATTCTGGTGATAGAGTCCTCTTCGCTGTGCTGTGGCTAGGGCTCAC
CCACCCCCCCACCCCCCCTCTGTTTTTCGGGCGGGGTGGAATGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8880:2506..5550-

>mRNA_Ecto-sp9_F_contig8880.17055.1 ID=mRNA_Ecto-sp9_F_contig8880.17055.1|Name=mRNA_Ecto-sp9_F_contig8880.17055.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1044bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8880:2506..5550- (Ectocarpus species9 EcSCA_722f female)
ATGTGCGGTCTGTATGTGCGGTCTGTATAAAGCCGCGACGGCATTCCAGT
ACTTGGCTACGATCGTGATCAGCTTTGTTCTGGTGATGGTGGTGGTCGCG
GCCTTTATGCCGGCTCCCGTTACCGGAAAGCTTGGGCTCGCCGTGGGGAT
CATGCTGTTCGTCTTCGCCTTGTTCGAGCTCATCGCCTTCTGCACCTTTG
CTGCCTTCATCTACGAACATAAAGCCGCGACGGCATTCCAGTACTTGGCT
ACGATCGTGATCAGCTTTGTTCTGGTGATGGTGGTGGTCGCGGCCTTTAT
GCCGGCTCCCGTTACCGGAAAGCTTGGGCTCGCCGTGGGGATCATGCTGT
TCGTCTTCGCCTTGTTCGAGCTCATCGCCTTCTGCACCTTTGCTGCCTTC
ATCTACGAACTCGAGGATTCGTTGTATTCCTACTTCTCCAGTGCCTACTC
CTTCGACTACTCCCCTGGTCCTACCCTTGCCGTAGCCGTCGTTGCTTTCA
TCTTTGGCTTGGTGGGCGCCATCGTGACCTGCGTTCTGCGCAACAAGGCA
ACGGCCGAACAAGACGGTCCTTTCAGGGCGTGCATGCCTAACGCAAAGGC
GGGCGGTTCGCCTTCGTCGGCTCCCCCGGCTGCTGCTGGTGTTGCGACTG
CGAGTGCGGTACCCCAGCCAGGCGCCGCGCCTGCGGGAACCAAGGTTTCT
CAATACCCTGCCGTCGGGACAGTGTAGTCGAGGATTCGTTGTATTCCTAC
TTCTCCAGTGCCTACTCCTTCGACTACTCCCCTGGTCCTACCCTTGCCGT
AGCCGTCGTTGCTTTCATCTTTGGCTTGGTGGGCGCCATCGTGACCTGCG
TTCTGCGCAACAAGGCAACGGCCGAACAAGACGGTCCTTTCAGGGCGTGC
ATGCCTAACGCAAAGGCGGGCGGTTCGCCTTCGTCGGCTCCCCCGGCTGC
TGCTGGTGTTGCGACTGCGAGTGCGGTACCCCAGCCAGGCGCCGCGCCTG
CGGGAACCAAGGTTTCTCAATACCCTGCCGTCGGGACAGTGTAG
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