mRNA_Ecto-sp9_F_contig885.17035.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig885.17035.1
Unique NamemRNA_Ecto-sp9_F_contig885.17035.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig885.17035.1 vs.
Match: Protein (phosphatase type 2A regulator/ signal transducer n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVB5_ECTSI)

HSP 1 Score: 1350 bits (3493), Expect = 0.000e+0
Identity = 708/743 (95.29%), Postives = 716/743 (96.37%), Query Frame = 1
Query:   22 MPPLPAKKSPGTSDAAASNLAKQPLAVSPRAVSSLKPDTGDGATFESYLSYKPSHGEDTLAVYEAVNDPSKWLLKNKETGQEVEATAFADTLLARRPAPQWATVSPRLGSHSHGSRGWPRLQRHKAPAFQRPTLLPPSNGDIAYFPLPSAGPLTPPSLQLGFSSLSGRSSPLRFGARSPVSGQSFSRPRSGSNSHGRSNSDSTTSSVILSVDAPPSFKLRNMSTTQLLPRLHPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTTALEEGYPNAAATAVSLPVDRGMSRQPNSVSVEGRLVDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDGRIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELMVECRRHGFRHSAAQRTRLATSPVRRLSVGTGDGRSNGAGGDRVXXXXXXXXXXXXXXXXXXXXXNTLGSRAGARVPGTVEERVTGLCFRPQTKGPTELTGDCGDSDGEEHRVSGASRSTGGKMGEYSQEVAPSPRIGGEVEAPQADEKDANGSGNLWVERLETDLLVSTNDNRSRILVSGERGVTVGFKLKGHSTEGELGRHTAARYSDDGNFIVSGATDGSVHVWSTPTTPPGTKSVTWSSGREGHERARVCDKRVGVPVAFFAPASVAKNLGGTSSRVIVTGDNEGNCKIFCERRADREP 2250
            MPPLPAKKSPGTSDAAASNLAKQP A SPRAVSSLKPDT DGATFESYLSYKPSHGEDTLAVYEAV+DPSKWLLKNKETGQEVEATAFADTLLARRPAPQWATVSPRLGSHSHGSRGWPRLQRHKAPAFQRPTLLPPSNGD+AYFPL  AGPLTPPSLQLGFSSLSGR+SPLRFGARSPVSGQSFSRPR GSNSHGRSNSDSTTSSVILSVDAPP+FKLRNMSTTQLLPRLHPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQT AL EG PNAAA AV LPVDRGMSRQP+SV VEGRLVDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEA GGRFLTGCMD RIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQ FAAGGIAGNVEFYRM+NMSLEL VECRRHGFRHSAAQRTRLATSPVRRLSVGTGDGRSNGAGGDRVXXXXXXXXXXXXXXXXXXXXXNTLGSRAGARVPGTVEERVTGLCFRP TKGP EL GDC DSDGEEHR+SGASRSTGGKMGE SQEVAPSPR GGEV APQADEKDANGSGNLWVERLE DLLVSTNDNRSRILVSGERGVTVGFKLKGHSTEGELGRHTAARYSDDGN IVSGATDGSVHVW TPTTPPGTKSVTWSSGREGHERARVCDKRVGVPVAFFAPASVAKNLGGTSSRVIVTGDNEGNCKIFCE+RAD EP
Sbjct:    1 MPPLPAKKSPGTSDAAASNLAKQPPAESPRAVSSLKPDTSDGATFESYLSYKPSHGEDTLAVYEAVSDPSKWLLKNKETGQEVEATAFADTLLARRPAPQWATVSPRLGSHSHGSRGWPRLQRHKAPAFQRPTLLPPSNGDVAYFPLAPAGPLTPPSLQLGFSSLSGRASPLRFGARSPVSGQSFSRPRCGSNSHGRSNSDSTTSSVILSVDAPPTFKLRNMSTTQLLPRLHPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTLALGEGSPNAAAVAVGLPVDRGMSRQPSSVCVEGRLVDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEAHGGRFLTGCMDARIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQSFAAGGIAGNVEFYRMENMSLELTVECRRHGFRHSAAQRTRLATSPVRRLSVGTGDGRSNGAGGDRVXXXXXXXXXXXXXXXXXXXXXNTLGSRAGARVPGTVEERVTGLCFRPPTKGPAELAGDCSDSDGEEHRLSGASRSTGGKMGENSQEVAPSPRAGGEVVAPQADEKDANGSGNLWVERLEADLLVSTNDNRSRILVSGERGVTVGFKLKGHSTEGELGRHTAARYSDDGNLIVSGATDGSVHVWPTPTTPPGTKSVTWSSGREGHERARVCDKRVGVPVAFFAPASVAKNLGGTSSRVIVTGDNEGNCKIFCEQRADGEP 743          
BLAST of mRNA_Ecto-sp9_F_contig885.17035.1 vs.
Match: WD (repeat-containing protein YMR102C-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D5FE9)

HSP 1 Score: 107 bits (267), Expect = 2.140e-20
Identity = 71/224 (31.70%), Postives = 108/224 (48.21%), Query Frame = 1
Query:  715 HPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTTALEEGYPNAAATAVSLPVDRGMSRQPNSVSVEGRL--VDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDGRIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELMVECRRHGFRHSA 1380
            H G +R M FSP G +LA+ G D   C++ V     +T+  E    +          R  S  P SV +  R+  ++++PL    GH   V+ LAW+  D+ LL+ S D TVR W  +  +EC  V+ H   VT V + P  E     FL+G +DG++R+F ++   V         VTA+ + P G+ F  G ++G   FY      +EL  E    G + S+
Sbjct:  224 HNGLIRIMKFSPDGQYLASGGEDGIVCIWHVNSIDASTSTAECKFGSQDMEGPSSSQRKKSSHP-SVIIPQRIFHIEEEPLHKFHGHASDVLDLAWSTTDH-LLSSSMDKTVRLWR-VGSDECLGVFHHSNYVTCVQFNPADE---NYFLSGSIDGKVRIFGVNKRRVVHWANVRDLVTAICYQPNGKGFVVGSLSGTCRFYETSGDEIELKAEINIQGRKKSS 441          
BLAST of mRNA_Ecto-sp9_F_contig885.17035.1 vs.
Match: Hypothetical (protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KGP9_SPIIN)

HSP 1 Score: 106 bits (264), Expect = 4.740e-20
Identity = 71/215 (33.02%), Postives = 107/215 (49.77%), Query Frame = 1
Query:  715 HPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTTALEEGYPNAAATAVSLPVDRGMSRQPNSVSVEGRLVDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDGRIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRM-DNMSLELMVECR 1356
            H G +  M FSP G +LAT G D   CV R+ +     A+EE   ++          R +   P+ V ++   + + PL+ L GH   V+ L W+   N LLT S D TVR WH +    C +V++H   VT V + P      G F++G +DG++R++ +    V   V     +TAV + P G+ F AG + GN  FY   D + L+  V+ R
Sbjct:  253 HKGSIGTMRFSPDGRYLATGGED---CVVRLWR-----AVEEEEDDSHLVIRG----RYLDSAPSEVPIKNFKLSETPLQELHGHTSDVLDLTWSES-NYLLTSSKDKTVRLWH-VGHKHCLKVFQHNNYVTCVQFNP---IDHGHFISGSIDGKVRIWGISEARVVDWVDIGDIITAVCYRPDGEGFVAGSVTGNCRFYLSGDTLQLDQEVKIR 450          
BLAST of mRNA_Ecto-sp9_F_contig885.17035.1 vs.
Match: Uncharacterized (protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S6S1_BLAHN)

HSP 1 Score: 103 bits (258), Expect = 6.600e-20
Identity = 75/220 (34.09%), Postives = 107/220 (48.64%), Query Frame = 1
Query:  709 RLHPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTTALEEGYPNAAATAVSLPVDRGMSRQPNSVSVEGRLVDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDGRIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELMVECR-RHG 1365
            R H   +  M FS    +LAT G D    +++V+K       EE   N                      ++ R+ +DQP+R  TGH   +V  AW+  +  LL+ S D TVR WHP   N C  +++H   VTSV + P  EA    F++GCMD ++R++S+    V +   +   +T V FCPGG+  AAG   G V FY  D +     +ECR RHG
Sbjct:   64 RHHQNAIWTMKFSCDRKYLATGGEDGVVNIWKVRK----VTKEEWKEN----------------------MDVRIFEDQPVRSYTGHTSHIVDFAWSK-NGFLLSASLDCTVRLWHPDYDN-CLCIFKHKDMVTSVDFYPEEEAY---FISGCMDRKLRVWSIPQGCVLKWTQAPSVITTVTFCPGGRLCAAGLSDGQVIFYYSDGLRYFTQMECRNRHG 252          
BLAST of mRNA_Ecto-sp9_F_contig885.17035.1 vs.
Match: lissencephaly-1 (homolog 1 isoform X2 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RRS7_ELAGV)

HSP 1 Score: 103 bits (256), Expect = 4.990e-19
Identity = 84/274 (30.66%), Postives = 133/274 (48.54%), Query Frame = 1
Query:  673 KLRNMSTTQLLP----RLHPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTTA------LEEGYPNAAATA-VSLPVDRGMSRQPNSVSVEGRL--VDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDGRIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELMVECRRHGFRHSAAQR-TRLATSPV--RRLSVGTGDGR 1446
            K R+M  T L      + H G +RAM FSPSG +LA+ G D   C+ R+ + R+         ++E   N  A   + L   +  S    SV +  ++  +++ PL+   GH   ++ L+W+  D  LLT S D TVR W  +  + C +V+ H   VT V + P        F++G +DG++R++ +    V   V     VTA+++ P G+ F  G I GN  FY     +++L       G + SA +R T L  SP   +R+ V  GD +
Sbjct:  239 KKRSMEFTALYMGQEIKAHKGLIRAMKFSPSGCYLASGGED---CIVRIWQIREVETSCECSNVDESSKNVDAVKDIKLHFSKKCSNSA-SVIIPKKVFKIEEAPLQEFYGHTGDILDLSWSKSD-CLLTSSKDKTVRMWK-VGCDGCLKVFRHNDYVTCVQFNPNDNKY---FISGSIDGKVRIWGVPENRVVDWVDLRDIVTAISYRPDGKGFVVGCITGNCRFYNYSGQNMQLDSRLCIQGKKKSAGKRITSLQFSPKDSQRVMVTAGDAK 503          
BLAST of mRNA_Ecto-sp9_F_contig885.17035.1 vs.
Match: uncharacterized (protein LOC111367803 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D5A50)

HSP 1 Score: 102 bits (254), Expect = 8.130e-19
Identity = 68/224 (30.36%), Postives = 105/224 (46.88%), Query Frame = 1
Query:  715 HPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTTALEEGYPNAAATAVSLPVDRGMSRQPNSVSVEGRL--VDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDGRIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELMVECRRHGFRHSA 1380
            H G +  M FSP G +LA+ G D   C++RV     +    E               R  S  P SV +  R+  ++++P  +  GH   ++ LAW+   N LL+ S D TVR W  +  +EC  ++ H   VT V + PG E     F++G +DG++R+F +    V     +   VTA+ + P G+ F  G ++G   FY      LEL  E    G + S+
Sbjct:  223 HHGLIWTMKFSPDGQYLASGGEDGVVCIWRVSSIDASCNDAECKFGCQDMEGPSSSQRKKSSHP-SVIIPERIFHIEEEPFHMFHGHTSDILDLAWST-TNHLLSSSMDNTVRLWQ-VGSDECLGIFHHSYYVTCVQFNPGDE---NYFISGSIDGKVRIFGVTKKRVVHWANARDVVTAICYKPDGKGFVVGSLSGTCRFYETSGDELELKAEINIQGRKKSS 440          
BLAST of mRNA_Ecto-sp9_F_contig885.17035.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DE76_AQUCA)

HSP 1 Score: 100 bits (249), Expect = 3.430e-18
Identity = 70/236 (29.66%), Postives = 110/236 (46.61%), Query Frame = 1
Query:  715 HPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTTALEEGYPNAAATAVSLPVDRGMSRQ---------PNSVSVEGRL--VDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDGRIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELMVECRRHGFRHSAAQR 1389
            H G +  M FSP G +LA+ G D    ++ V      T+ +    N  A   S  + +   R+         P SV +  +   VD+ PL    GH D V+ L W+   N LL+ S D TVR W  +  +EC +V+ H   VT + + P  +   G F++G +DG++R++ L    V         +TA+ + P GQ F  G I+G+  FY     +L+L  +    G + S+  R
Sbjct:  233 HKGFIWTMKFSPDGQYLASGGEDGVVRIWHV------TSTDASSKNLTAKDASKLIHKARRRKLLPGKKKSKPASVVIPQKAFKVDESPLHEFYGHTDDVLDLCWSKS-NCLLSSSKDETVRLWQ-VGSDECLQVFPHNNYVTCIQFNPTDD---GYFISGSIDGKVRIWGLSECRVVDWADVRDIITAICYQPDGQGFVVGSISGHCRFYDASGNNLQLDAQISVQGRKKSSNNR 457          
BLAST of mRNA_Ecto-sp9_F_contig885.17035.1 vs.
Match: WD (repeat-containing protein 44-like isoform X3 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9B0F4_PHODC)

HSP 1 Score: 98.6 bits (244), Expect = 8.470e-18
Identity = 87/275 (31.64%), Postives = 132/275 (48.00%), Query Frame = 1
Query:  673 KLRNMSTTQLLP----RLHPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTTALEEGYPNAAATAVSLPVDRGMS-------RQPNSVSV----EGRLVDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGG-GVTSVAWEPGGEARGGRFLTGCMDGRIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELMVECRRHGFRHSAAQR-TRLATSPV--RRLSVGTGD 1440
            K R+M  T L      + H G +R M FSPSG +LA+ G D   CV R+ + R+     E     + T  S  VDR          +  NS SV    +   +++ PL+   GH   ++ L+W+  D  LLT S D TVR W  +  + C +V++H    VT V + P        F++G +DG++R++ +    V   V     VTA+ + P G+ F  G I GN  FY     +++L  +    G + SA +R T L  SP   +++ V TGD
Sbjct:  244 KKRSMEFTALYVGQEIKAHEGLIRVMKFSPSGCYLASGGED---CVVRIWQIREV----ETSCQCSNTDESSNVDRVKDIKLHFSKKCSNSASVIIPNKVFKIEEAPLQEFYGHTSDILDLSWSKSD-CLLTSSKDKTVRMWK-VGCDGCLKVFQHNDYAVTCVQFNP---IDNKYFISGSIDGKVRIWGVPENRVVDWVDLRDIVTAICYRPDGKGFVVGCITGNCRFYNYSGQNMQLDSQLCIQGKKKSAGKRITSLQFSPKDSQKVMVTTGD 506          
BLAST of mRNA_Ecto-sp9_F_contig885.17035.1 vs.
Match: Uncharacterized (protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TST8_KALFE)

HSP 1 Score: 98.6 bits (244), Expect = 1.160e-17
Identity = 64/217 (29.49%), Postives = 109/217 (50.23%), Query Frame = 1
Query:  709 RLHPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTTALEEGYPNAAATAVSLPV-DRGMSRQPNSVSVEGRL--VDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDGRIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELMVE 1350
            + H G +  M FSP G +LA+ G D    ++RV  +             + +  S PV D     + +SV+V  ++  +D+ P + L GH   ++ LAW+   N LL+ S D TVR W  +  ++C +V+ H   VT + + P  +     F+TG +DG++R++ + +  V   V ++  VTAV + P G+ F  G ++G   FY  D     + +E
Sbjct:  200 KAHKGFILTMKFSPDGQYLASGGQDGVVRIWRVTSKE------------SCSKYSAPVCDERSKTKFSSVAVPDKVFAIDELPFQELYGHSGDILDLAWSNA-NLLLSSSKDKTVRLWE-VGSDDCLKVFHHNDYVTCIQFNPVDDKH---FITGSIDGKVRIWGVLNGRVVDWVYAKDVVTAVCYKPDGRGFVVGSVSGVCRFYGNDASKEHIQLE 399          
BLAST of mRNA_Ecto-sp9_F_contig885.17035.1 vs.
Match: WD40-repeat-containing (domain protein n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6RDM0_ACTCC)

HSP 1 Score: 98.6 bits (244), Expect = 1.220e-17
Identity = 72/232 (31.03%), Postives = 112/232 (48.28%), Query Frame = 1
Query:  709 RLHPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRRQTTA--LEEGYPNAAATAVSLPVDRGMSRQPNSVSVEGRL--VDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEG-NECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDGRIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELMVECRRHGFRHSAAQR 1389
            R H G + +M FSP   +LA+ G D    ++RV +   +     +EG  N+  T  S            SV +  ++  +D+ PL+   GH   V+ LAW+   N LL+ S D TVR W  L G NEC  V++H   VT + + P  E     F+TG +DG++R++ +    V        +VTA+ + P G  F  G I G   FY     +L+L  + R  G + S++ +
Sbjct:  208 RAHEGLIWSMKFSPDCQYLASGGQDGIIRIWRVTQSDTSCKDLYDEGKSNSGKTKSSHI----------SVGIPDKVFRIDELPLQEFHGHTSDVLDLAWSTS-NCLLSASKDKTVRLW--LVGCNECLGVFQHNDYVTCIQFNPTDE---NYFITGSVDGKVRIWGVPERRVVDWADVRDSVTAICYHPDGNGFIVGSIMGTCSFYGASESNLQLNAQIRFRGKKKSSSNK 423          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig885.17035.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein0.000e+095.29phosphatase type 2A regulator/ signal transducer n... [more]
WD2.140e-2031.70repeat-containing protein YMR102C-like n=1 Tax=Ole... [more]
Hypothetical4.740e-2033.02protein n=2 Tax=Spirodela intermedia TaxID=51605 R... [more]
Uncharacterized6.600e-2034.09protein n=1 Tax=Blastocystis sp. subtype 1 (strain... [more]
lissencephaly-14.990e-1930.66homolog 1 isoform X2 n=4 Tax=Arecaceae TaxID=4710 ... [more]
uncharacterized8.130e-1930.36protein LOC111367803 n=1 Tax=Olea europaea var. sy... [more]
Uncharacterized3.430e-1829.66protein n=1 Tax=Aquilegia coerulea TaxID=218851 Re... [more]
WD8.470e-1831.64repeat-containing protein 44-like isoform X3 n=1 T... [more]
Uncharacterized1.160e-1729.49protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787... [more]
WD40-repeat-containing1.220e-1731.03domain protein n=2 Tax=Actinidia TaxID=3624 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig885contigEcto-sp9_F_contig885:25019..27271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1358.6
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FVB5
Preferred nameWDR44
KEGG koko:K20241
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005874,GO:0008150,GO:0010008,GO:0012505,GO:0015630,GO:0016020,GO:0017016,GO:0017137,GO:0019899,GO:0030334,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0040012,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0050789,GO:0050794,GO:0051020,GO:0051270,GO:0065007,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:2000145
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG0283@1,KOG0283@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-14_000490.1
Exons1
Model size2253
Cds size2232
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930937.8611865-CDS-Ecto-sp9_F_contig885:25018..272501622930937.8611865-CDS-Ecto-sp9_F_contig885:25018..27250Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig885 25019..27250 -
1692278957.5186915-CDS-Ecto-sp9_F_contig885:25018..272501692278957.5186915-CDS-Ecto-sp9_F_contig885:25018..27250Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig885 25019..27250 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930937.8774369-UTR-Ecto-sp9_F_contig885:27250..272711622930937.8774369-UTR-Ecto-sp9_F_contig885:27250..27271Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig885 27251..27271 -
1692278957.5293078-UTR-Ecto-sp9_F_contig885:27250..272711692278957.5293078-UTR-Ecto-sp9_F_contig885:27250..27271Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig885 27251..27271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig885.17035.1prot_Ecto-sp9_F_contig885.17035.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig885 25019..27250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig885.17035.1

>prot_Ecto-sp9_F_contig885.17035.1 ID=prot_Ecto-sp9_F_contig885.17035.1|Name=mRNA_Ecto-sp9_F_contig885.17035.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=744bp
MPPLPAKKSPGTSDAAASNLAKQPLAVSPRAVSSLKPDTGDGATFESYLS
YKPSHGEDTLAVYEAVNDPSKWLLKNKETGQEVEATAFADTLLARRPAPQ
WATVSPRLGSHSHGSRGWPRLQRHKAPAFQRPTLLPPSNGDIAYFPLPSA
GPLTPPSLQLGFSSLSGRSSPLRFGARSPVSGQSFSRPRSGSNSHGRSNS
DSTTSSVILSVDAPPSFKLRNMSTTQLLPRLHPGGVRAMSFSPSGAFLAT
CGMDRRCCVFRVQKRRQTTALEEGYPNAAATAVSLPVDRGMSRQPNSVSV
EGRLVDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGN
ECSEVYEHGGGVTSVAWEPGGEARGGRFLTGCMDGRIRLFSLDSPEVEQS
VLSERAVTAVAFCPGGQRFAAGGIAGNVEFYRMDNMSLELMVECRRHGFR
HSAAQRTRLATSPVRRLSVGTGDGRSNGAGGDRVQINDNGNTNSGSGRGR
GRRRRNTLGSRAGARVPGTVEERVTGLCFRPQTKGPTELTGDCGDSDGEE
HRVSGASRSTGGKMGEYSQEVAPSPRIGGEVEAPQADEKDANGSGNLWVE
RLETDLLVSTNDNRSRILVSGERGVTVGFKLKGHSTEGELGRHTAARYSD
DGNFIVSGATDGSVHVWSTPTTPPGTKSVTWSSGREGHERARVCDKRVGV
PVAFFAPASVAKNLGGTSSRVIVTGDNEGNCKIFCERRADREP*
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mRNA from alignment at Ecto-sp9_F_contig885:25019..27271-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig885.17035.1 ID=mRNA_Ecto-sp9_F_contig885.17035.1|Name=mRNA_Ecto-sp9_F_contig885.17035.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2253bp|location=Sequence derived from alignment at Ecto-sp9_F_contig885:25019..27271- (Ectocarpus species9 EcSCA_722f female)
GATAACGGGAAGGAAACGGTTATGCCACCTCTGCCCGCCAAGAAAAGCCC CGGGACCAGTGATGCTGCTGCATCGAACCTTGCCAAACAGCCACTGGCGG TGTCTCCGAGAGCCGTTTCTTCTCTCAAGCCGGACACGGGTGATGGTGCA ACCTTCGAGAGCTACCTCTCCTATAAACCTTCTCATGGCGAGGACACCCT TGCAGTTTATGAAGCTGTGAACGATCCATCGAAGTGGCTGTTGAAGAACA AGGAAACTGGCCAGGAGGTCGAGGCCACAGCGTTCGCAGACACACTTTTG GCTCGTCGTCCAGCCCCCCAATGGGCCACGGTCTCACCACGCCTGGGATC TCACTCACACGGAAGCAGGGGCTGGCCAAGACTGCAACGACACAAAGCCC CCGCATTTCAGCGGCCAACTTTGCTTCCTCCAAGCAACGGCGACATTGCA TACTTCCCGCTGCCCTCTGCGGGTCCGCTCACCCCGCCCTCCCTCCAGTT GGGGTTTTCGAGCTTGTCAGGTAGGTCGTCGCCCTTGCGGTTTGGGGCGA GATCGCCGGTGTCGGGACAGTCCTTTTCGCGTCCGCGCAGTGGAAGCAAC TCCCATGGCCGAAGCAACAGCGACAGCACGACAAGCAGTGTCATCCTCAG CGTCGACGCACCCCCCAGTTTCAAGCTCCGCAACATGAGCACGACCCAGC TGTTGCCGAGGCTCCACCCCGGAGGTGTGAGGGCGATGTCGTTCAGCCCT TCCGGTGCATTCCTCGCGACATGCGGAATGGACCGACGCTGCTGCGTTTT TCGGGTACAAAAGCGTCGCCAAACAACGGCTCTCGAAGAAGGTTATCCGA ACGCCGCAGCGACAGCCGTTAGCCTTCCGGTGGACCGAGGAATGTCGAGA CAGCCGAACTCCGTTTCCGTGGAGGGGCGCCTGGTAGACGACCAACCTCT GCGGGTTCTCACGGGGCATGTTGATTCTGTCGTGGCCTTGGCTTGGGCGG GGGGGGACAACGCGCTCTTGACAGGGTCATCCGACGGGACTGTGCGCTGT TGGCACCCGTTGGAGGGGAACGAGTGCTCGGAAGTTTACGAGCACGGGGG GGGGGTGACTTCCGTGGCCTGGGAGCCCGGAGGTGAAGCGCGCGGGGGCA GGTTTTTGACGGGGTGCATGGACGGGAGAATCCGACTGTTTTCCTTGGAT TCTCCGGAGGTGGAACAGTCGGTTCTGTCGGAGAGGGCTGTGACTGCCGT CGCTTTTTGTCCGGGGGGACAACGCTTTGCCGCGGGCGGCATAGCCGGCA ATGTTGAGTTCTACCGCATGGACAACATGTCGCTCGAGCTGATGGTCGAG TGCCGCCGGCATGGCTTTCGGCATTCGGCTGCACAGCGAACACGCCTCGC GACGAGCCCCGTTAGACGGCTGTCCGTGGGCACCGGCGACGGGCGATCAA ATGGTGCCGGTGGCGACCGCGTCCAGATCAACGATAACGGCAATACTAAC AGCGGCAGCGGTAGAGGGCGCGGCAGAAGACGACGAAACACATTGGGGTC GAGAGCCGGAGCTCGAGTTCCAGGCACTGTAGAGGAACGAGTTACGGGAC TGTGCTTCCGCCCACAAACGAAAGGGCCGACTGAGCTGACGGGGGACTGC GGTGATTCAGATGGGGAAGAGCACCGAGTGAGCGGCGCCTCACGCAGCAC TGGGGGGAAGATGGGTGAATACTCGCAGGAGGTAGCCCCGAGTCCCCGCA TTGGAGGTGAGGTCGAGGCACCGCAGGCGGACGAGAAGGATGCGAACGGC AGTGGCAATCTGTGGGTGGAGCGTCTCGAGACTGACCTCCTTGTGAGCAC AAACGACAACCGCTCGCGCATACTGGTGTCAGGGGAGCGGGGTGTAACTG TCGGGTTCAAGCTCAAAGGGCACAGCACCGAGGGGGAACTCGGGCGGCAC ACGGCGGCGCGATACAGCGACGACGGAAACTTCATCGTAAGCGGTGCCAC GGATGGAAGTGTTCACGTCTGGTCCACGCCGACCACCCCGCCAGGCACCA AATCGGTGACTTGGTCAAGTGGGCGGGAGGGGCACGAGCGGGCGCGGGTG TGCGATAAGAGGGTAGGTGTCCCGGTGGCCTTCTTTGCCCCCGCTAGCGT GGCGAAGAACCTCGGAGGGACATCGAGCCGTGTGATCGTGACCGGAGACA ACGAGGGCAATTGCAAAATATTCTGCGAACGGCGTGCAGATAGAGAACCG TGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig885:25019..27271-

>mRNA_Ecto-sp9_F_contig885.17035.1 ID=mRNA_Ecto-sp9_F_contig885.17035.1|Name=mRNA_Ecto-sp9_F_contig885.17035.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=4464bp|location=Sequence derived from alignment at Ecto-sp9_F_contig885:25019..27271- (Ectocarpus species9 EcSCA_722f female)
ATGCCACCTCTGCCCGCCAAGAAAAGCCCCGGGACCAGTGATGCTGCTGC
ATCGAACCTTGCCAAACAGCCACTGGCGGTGTCTCCGAGAGCCGTTTCTT
CTCTCAAGCCGGACACGGGTGATGGTGCAACCTTCGAGAGCTACCTCTCC
TATAAACCTTCTCATGGCGAGGACACCCTTGCAGTTTATGAAGCTGTGAA
CGATCCATCGAAGTGGCTGTTGAAGAACAAGGAAACTGGCCAGGAGGTCG
AGGCCACAGCGTTCGCAGACACACTTTTGGCTCGTCGTCCAGCCCCCCAA
TGGGCCACGGTCTCACCACGCCTGGGATCTCACTCACACGGAAGCAGGGG
CTGGCCAAGACTGCAACGACACAAAGCCCCCGCATTTCAGCGGCCAACTT
TGCTTCCTCCAAGCAACGGCGACATTGCATACTTCCCGCTGCCCTCTGCG
GGTCCGCTCACCCCGCCCTCCCTCCAGTTGGGGTTTTCGAGCTTGTCAGG
TAGGTCGTCGCCCTTGCGGTTTGGGGCGAGATCGCCGGTGTCGGGACAGT
CCTTTTCGCGTCCGCGCAGTGGAAGCAACTCCCATGGCCGAAGCAACAGC
GACAGCACGACAAGCAGTGTCATCCTCAGCGTCGACGCACCCCCCAGTTT
CAAGCTCCGCAACATGAGCACGACCCAGCTGTTGCCGAGGCTCCACCCCG
GAGGTGTGAGGGCGATGTCGTTCAGCCCTTCCGGTGCATTCCTCGCGACA
TGCGGAATGGACCGACGCTGCTGCGTTTTTCGGGTACAAAAGCGTCGCCA
AACAACGGCTCTCGAAGAAGGTTATCCGAACGCCGCAGCGACAGCCGTTA
GCCTTCCGGTGGACCGAGGAATGTCGAGACAGCCGAACTCCGTTTCCGTG
GAGGGGCGCCTGGTAGACGACCAACCTCTGCGGGTTCTCACGGGGCATGT
TGATTCTGTCGTGGCCTTGGCTTGGGCGGGGGGGGACAACGCGCTCTTGA
CAGGGTCATCCGACGGGACTGTGCGCTGTTGGCACCCGTTGGAGGGGAAC
GAGTGCTCGGAAGTTTACGAGCACGGGGGGGGGGTGACTTCCGTGGCCTG
GGAGCCCGGAGGTGAAGCGCGCGGGGGCAGGTTTTTGACGGGGTGCATGG
ACGGGAGAATCCGACTGTTTTCCTTGGATTCTCCGGAGGTGGAACAGTCG
GTTCTGTCGGAGAGGGCTGTGACTGCCGTCGCTTTTTGTCCGGGGGGACA
ACGCTTTGCCGCGGGCGGCATAGCCGGCAATGTTGAGTTCTACCGCATGG
ACAACATGTCGCTCGAGCTGATGGTCGAGTGCCGCCGGCATGGCTTTCGG
CATTCGGCTGCACAGCGAACACGCCTCGCGACGAGCCCCGTTAGACGGCT
GTCCGTGGGCACCGGCGACGGGCGATCAAATGGTGCCGGTGGCGACCGCG
TCCAGATCAACGATAACGGCAATACTAACAGCGGCAGCGGTAGAGGGCGC
GGCAGAAGACGACGAAACACATTGGGGTCGAGAGCCGGAGCTCGAGTTCC
AGGCACTGTAGAGGAACGAGTTACGGGACTGTGCTTCCGCCCACAAACGA
AAGGGCCGACTGAGCTGACGGGGGACTGCGGTGATTCAGATGGGGAAGAG
CACCGAGTGAGCGGCGCCTCACGCAGCACTGGGGGGAAGATGGGTGAATA
CTCGCAGGAGGTAGCCCCGAGTCCCCGCATTGGAGGTGAGGTCGAGGCAC
CGCAGGCGGACGAGAAGGATGCGAACGGCAGTGGCAATCTGTGGGTGGAG
CGTCTCGAGACTGACCTCCTTGTGAGCACAAACGACAACCGCTCGCGCAT
ACTGGTGTCAGGGGAGCGGGGTGTAACTGTCGGGTTCAAGCTCAAAGGGC
ACAGCACCGAGGGGGAACTCGGGCGGCACACGGCGGCGCGATACAGCGAC
GACGGAAACTTCATCGTAAGCGGTGCCACGGATGGAAGTGTTCACGTCTG
GTCCACGCCGACCACCCCGCCAGGCACCAAATCGGTGACTTGGTCAAGTG
GGCGGGAGGGGCACGAGCGGGCGCGGGTGTGCGATAAGAGGGTAGGTGTC
CCGGTGGCCTTCTTTGCCCCCGCTAGCGTGGCGAAGAACCTCGGAGGGAC
ATCGAGCCGTGTGATCGTGACCGGAGACAACGAGGGCAATTGCAAAATAT
TCTGCGAACGGCGTGCAGATAGAGAACCGTGAATGCCACCTCTGCCCGCC
AAGAAAAGCCCCGGGACCAGTGATGCTGCTGCATCGAACCTTGCCAAACA
GCCACTGGCGGTGTCTCCGAGAGCCGTTTCTTCTCTCAAGCCGGACACGG
GTGATGGTGCAACCTTCGAGAGCTACCTCTCCTATAAACCTTCTCATGGC
GAGGACACCCTTGCAGTTTATGAAGCTGTGAACGATCCATCGAAGTGGCT
GTTGAAGAACAAGGAAACTGGCCAGGAGGTCGAGGCCACAGCGTTCGCAG
ACACACTTTTGGCTCGTCGTCCAGCCCCCCAATGGGCCACGGTCTCACCA
CGCCTGGGATCTCACTCACACGGAAGCAGGGGCTGGCCAAGACTGCAACG
ACACAAAGCCCCCGCATTTCAGCGGCCAACTTTGCTTCCTCCAAGCAACG
GCGACATTGCATACTTCCCGCTGCCCTCTGCGGGTCCGCTCACCCCGCCC
TCCCTCCAGTTGGGGTTTTCGAGCTTGTCAGGTAGGTCGTCGCCCTTGCG
GTTTGGGGCGAGATCGCCGGTGTCGGGACAGTCCTTTTCGCGTCCGCGCA
GTGGAAGCAACTCCCATGGCCGAAGCAACAGCGACAGCACGACAAGCAGT
GTCATCCTCAGCGTCGACGCACCCCCCAGTTTCAAGCTCCGCAACATGAG
CACGACCCAGCTGTTGCCGAGGCTCCACCCCGGAGGTGTGAGGGCGATGT
CGTTCAGCCCTTCCGGTGCATTCCTCGCGACATGCGGAATGGACCGACGC
TGCTGCGTTTTTCGGGTACAAAAGCGTCGCCAAACAACGGCTCTCGAAGA
AGGTTATCCGAACGCCGCAGCGACAGCCGTTAGCCTTCCGGTGGACCGAG
GAATGTCGAGACAGCCGAACTCCGTTTCCGTGGAGGGGCGCCTGGTAGAC
GACCAACCTCTGCGGGTTCTCACGGGGCATGTTGATTCTGTCGTGGCCTT
GGCTTGGGCGGGGGGGGACAACGCGCTCTTGACAGGGTCATCCGACGGGA
CTGTGCGCTGTTGGCACCCGTTGGAGGGGAACGAGTGCTCGGAAGTTTAC
GAGCACGGGGGGGGGGTGACTTCCGTGGCCTGGGAGCCCGGAGGTGAAGC
GCGCGGGGGCAGGTTTTTGACGGGGTGCATGGACGGGAGAATCCGACTGT
TTTCCTTGGATTCTCCGGAGGTGGAACAGTCGGTTCTGTCGGAGAGGGCT
GTGACTGCCGTCGCTTTTTGTCCGGGGGGACAACGCTTTGCCGCGGGCGG
CATAGCCGGCAATGTTGAGTTCTACCGCATGGACAACATGTCGCTCGAGC
TGATGGTCGAGTGCCGCCGGCATGGCTTTCGGCATTCGGCTGCACAGCGA
ACACGCCTCGCGACGAGCCCCGTTAGACGGCTGTCCGTGGGCACCGGCGA
CGGGCGATCAAATGGTGCCGGTGGCGACCGCGTCCAGATCAACGATAACG
GCAATACTAACAGCGGCAGCGGTAGAGGGCGCGGCAGAAGACGACGAAAC
ACATTGGGGTCGAGAGCCGGAGCTCGAGTTCCAGGCACTGTAGAGGAACG
AGTTACGGGACTGTGCTTCCGCCCACAAACGAAAGGGCCGACTGAGCTGA
CGGGGGACTGCGGTGATTCAGATGGGGAAGAGCACCGAGTGAGCGGCGCC
TCACGCAGCACTGGGGGGAAGATGGGTGAATACTCGCAGGAGGTAGCCCC
GAGTCCCCGCATTGGAGGTGAGGTCGAGGCACCGCAGGCGGACGAGAAGG
ATGCGAACGGCAGTGGCAATCTGTGGGTGGAGCGTCTCGAGACTGACCTC
CTTGTGAGCACAAACGACAACCGCTCGCGCATACTGGTGTCAGGGGAGCG
GGGTGTAACTGTCGGGTTCAAGCTCAAAGGGCACAGCACCGAGGGGGAAC
TCGGGCGGCACACGGCGGCGCGATACAGCGACGACGGAAACTTCATCGTA
AGCGGTGCCACGGATGGAAGTGTTCACGTCTGGTCCACGCCGACCACCCC
GCCAGGCACCAAATCGGTGACTTGGTCAAGTGGGCGGGAGGGGCACGAGC
GGGCGCGGGTGTGCGATAAGAGGGTAGGTGTCCCGGTGGCCTTCTTTGCC
CCCGCTAGCGTGGCGAAGAACCTCGGAGGGACATCGAGCCGTGTGATCGT
GACCGGAGACAACGAGGGCAATTGCAAAATATTCTGCGAACGGCGTGCAG
ATAGAGAACCGTGA
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