mRNA_Ecto-sp9_F_contig8847.17030.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8847.17030.1
Unique NamemRNA_Ecto-sp9_F_contig8847.17030.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8847.17030.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J997_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 3.440e-59
Identity = 127/139 (91.37%), Postives = 129/139 (92.81%), Query Frame = 1 
Query:   37 GRG---VCRKLGQGEVGYVATTHTMSGVYRKWDCQRRNPVDTTWKTTPKNKEMYEDLTKRVVPGASKGQVAFQARGLDLNSNKASARAKPRGRRKAXXXXXXXXXXXXXXXXXXXAWEAASRKRRGQKETRVAPHSYVV 444
            GRG   VCRKLGQGEVGYVATTHTMSGVYRKWDCQRRNPVDTTWKTTPKNKE+ EDLTKRVVPGAS+GQVAFQARGLDLNSNKASA AKPRGRR  XXXXXXXXXXXXXXXXX   WEAASRKRRGQKETRVAPHSYVV
Sbjct:  851 GRGGVSVCRKLGQGEVGYVATTHTMSGVYRKWDCQRRNPVDTTWKTTPKNKEVDEDLTKRVVPGASRGQVAFQARGLDLNSNKASALAKPRGRRHGXXXXXXXXXXXXXXXXX---WEAASRKRRGQKETRVAPHSYVV 986
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BLAST of mRNA_Ecto-sp9_F_contig8847.17030.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG7_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 3.090e-27
Identity = 72/87 (82.76%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:  184 MYEDLTKRVVPGASKGQVAFQARGLDLNSNKASARAKPRGRRKAXXXXXXXXXXXXXXXXXXXAWEAASRKRRGQKETRVAPHSYVV 444
            M EDLT RVVPGASKGQVAFQARGL+LNSNKASARAKPRGRRKAXXXXXXX            AWEAASRKRRGQKETRVAPHSYVV
Sbjct:    1 MDEDLTNRVVPGASKGQVAFQARGLELNSNKASARAKPRGRRKAXXXXXXXLRTVKEEKEE--AWEAASRKRRGQKETRVAPHSYVV 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8847.17030.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.440e-5991.37protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.090e-2782.76protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8847contigEcto-sp9_F_contig8847:71..1876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_000870.3
Exons3
Model size447
Cds size444
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8847.17030.1prot_Ecto-sp9_F_contig8847.17030.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8847 71..1874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930937.0600393-CDS-Ecto-sp9_F_contig8847:70..1111622930937.0600393-CDS-Ecto-sp9_F_contig8847:70..111Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8847 71..111 +
1692278957.1723752-CDS-Ecto-sp9_F_contig8847:70..1111692278957.1723752-CDS-Ecto-sp9_F_contig8847:70..111Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8847 71..111 +
1622930937.0862813-CDS-Ecto-sp9_F_contig8847:781..9741622930937.0862813-CDS-Ecto-sp9_F_contig8847:781..974Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8847 782..974 +
1692278957.1813202-CDS-Ecto-sp9_F_contig8847:781..9741692278957.1813202-CDS-Ecto-sp9_F_contig8847:781..974Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8847 782..974 +
1622930937.1080983-CDS-Ecto-sp9_F_contig8847:1664..18741622930937.1080983-CDS-Ecto-sp9_F_contig8847:1664..1874Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8847 1665..1874 +
1692278957.1937866-CDS-Ecto-sp9_F_contig8847:1664..18741692278957.1937866-CDS-Ecto-sp9_F_contig8847:1664..1874Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8847 1665..1874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8847.17030.1

>prot_Ecto-sp9_F_contig8847.17030.1 ID=prot_Ecto-sp9_F_contig8847.17030.1|Name=mRNA_Ecto-sp9_F_contig8847.17030.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=148bp
GQGRIEEAQIVSGRGVCRKLGQGEVGYVATTHTMSGVYRKWDCQRRNPVD
TTWKTTPKNKEMYEDLTKRVVPGASKGQVAFQARGLDLNSNKASARAKPR
GRRKAGGGGGGGGGLRAVKEEEEEAWEAASRKRRGQKETRVAPHSYVV
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mRNA from alignment at Ecto-sp9_F_contig8847:71..1876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8847.17030.1 ID=mRNA_Ecto-sp9_F_contig8847.17030.1|Name=mRNA_Ecto-sp9_F_contig8847.17030.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1806bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8847:71..1876+ (Ectocarpus species9 EcSCA_722f female)
GGGCAGGGGCGCATCGAGGAGGCTCAGATTGTTAGCGGCAGGTGAGAGGA
GGGCGGGCGTGCACGCGGGGGTGGGTGGGTGGGGGTGAGTATGTTGTTGT
TCTTCTAAGGCTGCTAGACTGATGGTATGTTTCACCAGGGCAGTTAGTTT
GATGTGCTCATGTGTGATTGTTGACATTTTGCCGGCCGTCCTGCCGCAAA
GCTTGACCTAGCCTGGCAGGCGTTGTTGTTGTTGTTGTTTCTCACTTTAG
CTCTGTAGTCCACAAAATGGGGAGCCCGTGGTCTCANNNNNNNNNNATGA
TAGAAAGAAAAGAACAGCTACCGCACCGACCGGTCGAGAAAAGAGCCCTC
GGAGACCGATCAAAATAAAACGCGTGTATGGTGTTCACTTCTCGAGTCTT
TTTTCGCCGGGGGCAGCTGAGACTTGTCTATTTTTATTCTATATATTTGT
TTTTTGTATTGGCCGGTTTCCGCAAACACGTTCCTTGTGCTACATCCGTT
CTGCAGGAACTGCTGCGAATACTTGCATAATTTGGTTTTTCCCTTCTTCT
TTCGCTGCCGCTTTTTGGAGTCGTCAGCATTTTGAGCAACAAGGTACTTC
TGTTGCTAGTGACTATCGCCACCGTGGCCCCCTCCTTTCGTACCAATCAG
CATCATCCATTTTTCTCCTGCTGTGTTTGCCGCTGTATGCCTCGCGTTTC
TCCTCCACCAGAGGCGTATGCCGGAAGCTCGGGCAGGGAGAGGTGGGCTA
CGTGGCCACCACCCACACCATGTCGGGCGTTTACCGGAAGTGGGACTGTC
AGAGGCGGAATCCCGTGGATACCACGTGGAAAACCACCCCGAAGAACAAA
GAAATGTATGAAGATTTAACCAAGCGGGTCGTTCCAGGGGCGTCCAAAGG
GCAGGTATCTACGACTTCTACGATGGTGTCTGTTCCAAAGATGTGATGAA
TATTGTGAAAAACCGTTCGTTTTTGAAAGCGAAACACGCTTTCCTTTTTG
TGAAACGAAAAGTATCGGCACTTATGAAAATAGAAATTGAGGATTCTATT
TCACGAAATGTTGGAAGTTGAACCCTAGCCACCCTAAACCTACGGTATGT
TCGAGAATCCTCTACACCAAGCAGTGCACGATCATCCTTGTTGTTTTGCC
AAGCTGTTTTGCTGCCGTTTCAGAAATATATTGTGCGCTCTCTTGAAGTT
GACTCCGATCCTGGGTAGGCCAAGGTCGGGTAGGTCACTCACGGGGCCCC
TTATCCGCAACGCCTCCTGCTGCACTTCCTCCTTTGTCGACAAGCGTACT
TGGTGTCCACTACTGTTTCCCCCAACAGCCCTCGTAATTTCCTTTCCCCC
CAAAAAAAATAACAAGTACATTAATAATTAAATAACATCACACGCACCAC
ACCTATATTGCTTCCGATGTGGTATATGACGCAACGCTGGTTCTCTGCCG
CTCACATTCCGCCGTTCGTCCACGCTCAAGTAAAGCAATGACTAGACCGA
TAAATATTTGAAGTAGAAGACAAAATAACCCATTCTTTTTGTTCGTTTCT
AACCCCTATTTTAAGCTCGCCTCTTTCAACTTGAAATTTTTCAGGTGGCT
TTCCAAGCTCGGGGGTTGGACCTAAACTCGAACAAGGCGTCGGCCCGCGC
GAAGCCCCGCGGCCGTCGCAAGGCCGGGGGTGGGGGTGGCGGCGGCGGCG
GGCTGAGGGCTGTTAAGGAAGAAGAGGAGGAGGCGTGGGAAGCGGCCTCT
CGGAAGAGAAGGGGGCAGAAGGAGACGAGGGTTGCGCCGCATTCGTACGT
GGTGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8847:71..1876+

>mRNA_Ecto-sp9_F_contig8847.17030.1 ID=mRNA_Ecto-sp9_F_contig8847.17030.1|Name=mRNA_Ecto-sp9_F_contig8847.17030.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8847:71..1876+ (Ectocarpus species9 EcSCA_722f female)
GGGCAGGGGCGCATCGAGGAGGCTCAGATTGTTAGCGGCAGGGGCAGGGG
CGCATCGAGGAGGCTCAGATTGTTAGCGGCAGAGGCGTATGCCGGAAGCT
CGGGCAGGGAGAGGTGGGCTACGTGGCCACCACCCACACCATGTCGGGCG
TTTACCGGAAGTGGGACTGTCAGAGGCGGAATCCCGTGGATACCACGTGG
AAAACCACCCCGAAGAACAAAGAAATGTATGAAGATTTAACCAAGCGGGT
CGTTCCAGGGGCGTCCAAAGGGCAGAGGCGTATGCCGGAAGCTCGGGCAG
GGAGAGGTGGGCTACGTGGCCACCACCCACACCATGTCGGGCGTTTACCG
GAAGTGGGACTGTCAGAGGCGGAATCCCGTGGATACCACGTGGAAAACCA
CCCCGAAGAACAAAGAAATGTATGAAGATTTAACCAAGCGGGTCGTTCCA
GGGGCGTCCAAAGGGCAGGTGGCTTTCCAAGCTCGGGGGTTGGACCTAAA
CTCGAACAAGGCGTCGGCCCGCGCGAAGCCCCGCGGCCGTCGCAAGGCCG
GGGGTGGGGGTGGCGGCGGCGGCGGGCTGAGGGCTGTTAAGGAAGAAGAG
GAGGAGGCGTGGGAAGCGGCCTCTCGGAAGAGAAGGGGGCAGAAGGAGAC
GAGGGTTGCGCCGCATTCGTACGTGGTGGTGGCTTTCCAAGCTCGGGGGT
TGGACCTAAACTCGAACAAGGCGTCGGCCCGCGCGAAGCCCCGCGGCCGT
CGCAAGGCCGGGGGTGGGGGTGGCGGCGGCGGCGGGCTGAGGGCTGTTAA
GGAAGAAGAGGAGGAGGCGTGGGAAGCGGCCTCTCGGAAGAGAAGGGGGC
AGAAGGAGACGAGGGTTGCGCCGCATTCGTACGTGGTG
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