mRNA_Ecto-sp9_F_contig8840.17023.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8840.17023.1
Unique NamemRNA_Ecto-sp9_F_contig8840.17023.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8840.17023.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG5_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 5.490e-61
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:    1 TMRDDLLPDLIGQTLPPEWRGAGAAGGGSSSTAFPWTPGKSGHPDVDWFRRLWGYLASSRPTAVRLLAESYPVVPTGNSVVCPLSLRSAVIDGDRLGKDV 300
            TMRDDLLPDLIGQTLPPEWRGAGAAGGG SSTAFPWTPGKSGHPDVDWFRRLWGYLASSRPTAVRLLAESYPVVPTGNSVVCPLSLRSAVIDGDRLGKDV
Sbjct:  118 TMRDDLLPDLIGQTLPPEWRGAGAAGGGGSSTAFPWTPGKSGHPDVDWFRRLWGYLASSRPTAVRLLAESYPVVPTGNSVVCPLSLRSAVIDGDRLGKDV 217
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BLAST of mRNA_Ecto-sp9_F_contig8840.17023.1 vs.
Match: UBA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B9_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.140e-57
Identity = 96/100 (96.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 TMRDDLLPDLIGQTLPPEWRGAGAAGGGSSSTAFPWTPGKSGHPDVDWFRRLWGYLASSRPTAVRLLAESYPVVPTGNSVVCPLSLRSAVIDGDRLGKDV 300
            TMRDDLLPDLIGQTLPPEWRGA AAGG SSSTAFPWTPGKSGHPDVDWFRRLWGYLASSRPTAVRLLAESYPVVPTGNSVVCPLSLRSAVIDG RL KDV
Sbjct:  485 TMRDDLLPDLIGQTLPPEWRGAVAAGGDSSSTAFPWTPGKSGHPDVDWFRRLWGYLASSRPTAVRLLAESYPVVPTGNSVVCPLSLRSAVIDGGRLSKDV 584
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8840.17023.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.490e-6199.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
UBA1.140e-5796.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8840contigEcto-sp9_F_contig8840:2756..3055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.6
Seed ortholog evalue2.7e-51
Seed eggNOG ortholog2880.D8LJG5
KEGG koko:K17592
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
EggNOG free text desc.negative regulation of inclusion body assembly
EggNOG OGs28IDA@1,2QQPY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size297
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.3032093-UTR-Ecto-sp9_F_contig8840:2755..27581622930936.3032093-UTR-Ecto-sp9_F_contig8840:2755..2758Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8840 2756..2758 +
1692278956.876196-UTR-Ecto-sp9_F_contig8840:2755..27581692278956.876196-UTR-Ecto-sp9_F_contig8840:2755..2758Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8840 2756..2758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.3249452-CDS-Ecto-sp9_F_contig8840:2758..30551622930936.3249452-CDS-Ecto-sp9_F_contig8840:2758..3055Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8840 2759..3055 +
1692278956.8929918-CDS-Ecto-sp9_F_contig8840:2758..30551692278956.8929918-CDS-Ecto-sp9_F_contig8840:2758..3055Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8840 2759..3055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8840.17023.1prot_Ecto-sp9_F_contig8840.17023.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8840 2759..3055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8840.17023.1

>prot_Ecto-sp9_F_contig8840.17023.1 ID=prot_Ecto-sp9_F_contig8840.17023.1|Name=mRNA_Ecto-sp9_F_contig8840.17023.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=99bp
MRDDLLPDLIGQTLPPEWRGAGAAGGGSSSTAFPWTPGKSGHPDVDWFRR
LWGYLASSRPTAVRLLAESYPVVPTGNSVVCPLSLRSAVIDGDRLGKDV
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mRNA from alignment at Ecto-sp9_F_contig8840:2756..3055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8840.17023.1 ID=mRNA_Ecto-sp9_F_contig8840.17023.1|Name=mRNA_Ecto-sp9_F_contig8840.17023.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8840:2756..3055+ (Ectocarpus species9 EcSCA_722f female)
ACCATGCGTGATGACCTCCTGCCCGACCTCATCGGGCAGACTTTACCCCC
GGAGTGGCGCGGCGCCGGCGCCGCGGGGGGCGGCAGCAGCAGCACCGCGT
TCCCGTGGACCCCCGGTAAGTCCGGCCACCCGGACGTGGACTGGTTCCGG
CGGCTCTGGGGGTACCTCGCGTCGTCGCGGCCGACGGCGGTGCGGCTGCT
GGCGGAGTCGTACCCCGTGGTGCCCACGGGCAACTCGGTGGTGTGCCCCC
TCAGCCTGCGGTCTGCGGTCATCGACGGCGACAGACTCGGCAAGGACGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8840:2756..3055+

>mRNA_Ecto-sp9_F_contig8840.17023.1 ID=mRNA_Ecto-sp9_F_contig8840.17023.1|Name=mRNA_Ecto-sp9_F_contig8840.17023.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8840:2756..3055+ (Ectocarpus species9 EcSCA_722f female)
ATGCGTGATGACCTCCTGCCCGACCTCATCGGGCAGACTTTACCCCCGGA
GTGGCGCGGCGCCGGCGCCGCGGGGGGCGGCAGCAGCAGCACCGCGTTCC
CGTGGACCCCCGGTAAGTCCGGCCACCCGGACGTGGACTGGTTCCGGCGG
CTCTGGGGGTACCTCGCGTCGTCGCGGCCGACGGCGGTGCGGCTGCTGGC
GGAGTCGTACCCCGTGGTGCCCACGGGCAACTCGGTGGTGTGCCCCCTCA
GCCTGCGGTCTGCGGTCATCGACGGCGACAGACTCGGCAAGGACGTGATG
CGTGATGACCTCCTGCCCGACCTCATCGGGCAGACTTTACCCCCGGAGTG
GCGCGGCGCCGGCGCCGCGGGGGGCGGCAGCAGCAGCACCGCGTTCCCGT
GGACCCCCGGTAAGTCCGGCCACCCGGACGTGGACTGGTTCCGGCGGCTC
TGGGGGTACCTCGCGTCGTCGCGGCCGACGGCGGTGCGGCTGCTGGCGGA
GTCGTACCCCGTGGTGCCCACGGGCAACTCGGTGGTGTGCCCCCTCAGCC
TGCGGTCTGCGGTCATCGACGGCGACAGACTCGGCAAGGACGTG
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