mRNA_Ecto-sp9_F_contig8840.17022.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: UBA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B9_9PHAE) HSP 1 Score: 156 bits (395), Expect = 9.360e-42 Identity = 90/98 (91.84%), Postives = 90/98 (91.84%), Query Frame = 1
Query: 94 MKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
MKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNG RDIWSGSDMVGDGELRANW
Sbjct: 1 MKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNG--------RDIWSGSDMVGDGELRANW 90
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA) HSP 1 Score: 128 bits (321), Expect = 9.220e-32 Identity = 68/127 (53.54%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 7 PIVREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
P R++W VCNQLGG A AIA + + M+FVPWAGVAAR+ E G RG AYCFLPLPV TGLPVHVNGYFELSSNRRDIW+G DM GDG +RA W
Sbjct: 323 PPARQRWLVCNQLGGKRANAIAADPRHELMRFVPWAGVAARVK------------EDAGAAAVR--------------RGRAYCFLPLPVFTGLPVHVNGYFELSSNRRDIWTGDDMAGDGAVRAQW 423
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYE3_9STRA) HSP 1 Score: 123 bits (308), Expect = 5.170e-30 Identity = 67/125 (53.60%), Postives = 74/125 (59.20%), Query Frame = 1
Query: 13 VREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
+REKW VCNQ GG A +A + MK VPWAGVAAR+ + E G G+ + A G AYCFLPLPV TG PVHVNGYFELSSNRRDIW GSDM GDG RA W
Sbjct: 316 IREKWVVCNQFGGGRAAQMAADTSLEHMKLVPWAGVAARVG--------MHLPERGAAPWVAQWVPDGADAV--AAPGRAYCFLPLPVRTGFPVHVNGYFELSSNRRDIWHGSDMAGDGRTRAAW 430
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3V6_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.190e-29 Identity = 61/127 (48.03%), Postives = 69/127 (54.33%), Query Frame = 1
Query: 7 PIVREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
P V EKW VCNQ G + ++ S M+ VPWAGVAA+L T A GAAYCFLPLPV TGLPVHVNGYFELSS+RRD+W G DM G+G RA W
Sbjct: 29 PDVTEKWIVCNQYGRGNVSRMSSSADHSHMELVPWAGVAAQLPTDT------------------------------ATTGAAYCFLPLPVATGLPVHVNGYFELSSDRRDVWWGDDMAGEGRARAEW 125
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WI84_TETOB) HSP 1 Score: 121 bits (304), Expect = 1.800e-29 Identity = 66/130 (50.77%), Postives = 80/130 (61.54%), Query Frame = 1
Query: 1 TAPIVREKWQVCNQLGGPWATAIA-DSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
T +RE+W VCNQLGG A A+A + + + +K VPW GVAARL+++ + SV G G A G A+CFLPLP TGLP+HVNGYFELSSNRRD+W GSDM G G LRA W
Sbjct: 218 TVEALREEWLVCNQLGGGEARALALKAWRDEKVKMVPWVGVAARLSSSSSS--SVSKQSSDGQVGQAAGLGLGKTHASGALAGRAFCFLPLPASTGLPLHVNGYFELSSNRRDVWHGSDMAGAGRLRAQW 345
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WHX4_TETOB) HSP 1 Score: 121 bits (304), Expect = 1.800e-29 Identity = 66/130 (50.77%), Postives = 80/130 (61.54%), Query Frame = 1
Query: 1 TAPIVREKWQVCNQLGGPWATAIA-DSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
T +RE+W VCNQLGG A A+A + + + +K VPW GVAARL+++ + SV G G A G A+CFLPLP TGLP+HVNGYFELSSNRRD+W GSDM G G LRA W
Sbjct: 2070 TVEALREEWLVCNQLGGGEARALALKAWRDEKVKMVPWVGVAARLSSSSSS--SVSKQSSDGQVGQAAGLGLGKTHASGALAGRAFCFLPLPASTGLPLHVNGYFELSSNRRDVWHGSDMAGAGRLRAQW 2197
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HJR0_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.320e-27 Identity = 72/149 (48.32%), Postives = 81/149 (54.36%), Query Frame = 1
Query: 19 EKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEG-GGXXXXXXXXXXGSKRLP------------------------PAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIW-SGSDMVGDGELRANW 387
E W VCNQLGG A+ +A + A+ ++ VPWAGVAARL PP V AEG GG G + P+ GAAYCFLPLPV TGLP+HVNGYFELSSNRRDIW S DM GDG RA W
Sbjct: 357 ETWMVCNQLGGGRASNMASDKAAEHLRLVPWAGVAARLD-----PPPVPCAEGDGGEADGGATMDEGMDAVEVVDGDGVIDDTQTEAGTGAASATGPSSGGAAYCFLPLPVSTGLPIHVNGYFELSSNRRDIWWSADDMSGDGRRRAVW 500
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAL4_9STRA) HSP 1 Score: 114 bits (286), Expect = 4.800e-27 Identity = 62/124 (50.00%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 16 REKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
+E+W VCNQLGG A+ +A + MK VPWAGVAARL+ EGG AYCFLPLPV T LP+HVNGYFELSSNRRD+W G DM GDG+ RA W
Sbjct: 318 KERWMVCNQLGGGNASIMARDKALDHMKLVPWAGVAARLSPD-------CNVEGGN----------------------AYCFLPLPVRTKLPIHVNGYFELSSNRRDVWWGDDMAGDGKARAEW 412
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTG0_9EUKA) HSP 1 Score: 109 bits (273), Expect = 1.030e-26 Identity = 60/125 (48.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query: 13 VREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
V EK+ + LGG A A+A AK K +PWAG+AAR+ G + P G+A+CFLPLPV TGLPVHVNGYFELS+NRRDIW GSDM GDGE+R+ W
Sbjct: 49 VSEKYLLFEMLGGDRARAMAVENSAKGHKLLPWAGIAARIERK------------------------GPEPGPTDIEGSAFCFLPLPVRTGLPVHVNGYFELSANRRDIWWGSDMTGDGEMRSKW 149
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB77_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.160e-26 Identity = 60/126 (47.62%), Postives = 71/126 (56.35%), Query Frame = 1
Query: 10 IVREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
+ +E+W VCNQLGG A+ +A MK +PWAGVAARL+ + + F GAAYCFLPLP T LP HVNGYFELSSNRRD+W G DM GDG RA+W
Sbjct: 328 VKKERWIVCNQLGGGNASRMAQDPGLSHMKLIPWAGVAARLSP--LVDDTSF-------------------------EGAAYCFLPLPAKTKLPCHVNGYFELSSNRRDVWWGEDMAGDGRARADW 426 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8840.17022.1 >prot_Ecto-sp9_F_contig8840.17022.1 ID=prot_Ecto-sp9_F_contig8840.17022.1|Name=mRNA_Ecto-sp9_F_contig8840.17022.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=129bp TAPIVREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAback to top mRNA from alignment at Ecto-sp9_F_contig8840:7..1312+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8840.17022.1 ID=mRNA_Ecto-sp9_F_contig8840.17022.1|Name=mRNA_Ecto-sp9_F_contig8840.17022.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1306bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8840:7..1312+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8840:7..1312+ >mRNA_Ecto-sp9_F_contig8840.17022.1 ID=mRNA_Ecto-sp9_F_contig8840.17022.1|Name=mRNA_Ecto-sp9_F_contig8840.17022.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8840:7..1312+ (Ectocarpus species9 EcSCA_722f female)back to top |