mRNA_Ecto-sp9_F_contig8840.17022.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8840.17022.1
Unique NamemRNA_Ecto-sp9_F_contig8840.17022.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: UBA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B9_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 9.360e-42
Identity = 90/98 (91.84%), Postives = 90/98 (91.84%), Query Frame = 1
Query:   94 MKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
            MKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNG        RDIWSGSDMVGDGELRANW
Sbjct:    1 MKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNG--------RDIWSGSDMVGDGELRANW 90          
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 128 bits (321), Expect = 9.220e-32
Identity = 68/127 (53.54%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    7 PIVREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
            P  R++W VCNQLGG  A AIA   + + M+FVPWAGVAAR+             E  G                   RG AYCFLPLPV TGLPVHVNGYFELSSNRRDIW+G DM GDG +RA W
Sbjct:  323 PPARQRWLVCNQLGGKRANAIAADPRHELMRFVPWAGVAARVK------------EDAGAAAVR--------------RGRAYCFLPLPVFTGLPVHVNGYFELSSNRRDIWTGDDMAGDGAVRAQW 423          
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYE3_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.170e-30
Identity = 67/125 (53.60%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   13 VREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
            +REKW VCNQ GG  A  +A     + MK VPWAGVAAR+         +   E G           G+  +  A  G AYCFLPLPV TG PVHVNGYFELSSNRRDIW GSDM GDG  RA W
Sbjct:  316 IREKWVVCNQFGGGRAAQMAADTSLEHMKLVPWAGVAARVG--------MHLPERGAAPWVAQWVPDGADAV--AAPGRAYCFLPLPVRTGFPVHVNGYFELSSNRRDIWHGSDMAGDGRTRAAW 430          
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3V6_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.190e-29
Identity = 61/127 (48.03%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    7 PIVREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
            P V EKW VCNQ G    + ++ S     M+ VPWAGVAA+L T                                A  GAAYCFLPLPV TGLPVHVNGYFELSS+RRD+W G DM G+G  RA W
Sbjct:   29 PDVTEKWIVCNQYGRGNVSRMSSSADHSHMELVPWAGVAAQLPTDT------------------------------ATTGAAYCFLPLPVATGLPVHVNGYFELSSDRRDVWWGDDMAGEGRARAEW 125          
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WI84_TETOB)

HSP 1 Score: 121 bits (304), Expect = 1.800e-29
Identity = 66/130 (50.77%), Postives = 80/130 (61.54%), Query Frame = 1
Query:    1 TAPIVREKWQVCNQLGGPWATAIA-DSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
            T   +RE+W VCNQLGG  A A+A  + + + +K VPW GVAARL+++  +  SV      G          G      A  G A+CFLPLP  TGLP+HVNGYFELSSNRRD+W GSDM G G LRA W
Sbjct:  218 TVEALREEWLVCNQLGGGEARALALKAWRDEKVKMVPWVGVAARLSSSSSS--SVSKQSSDGQVGQAAGLGLGKTHASGALAGRAFCFLPLPASTGLPLHVNGYFELSSNRRDVWHGSDMAGAGRLRAQW 345          
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WHX4_TETOB)

HSP 1 Score: 121 bits (304), Expect = 1.800e-29
Identity = 66/130 (50.77%), Postives = 80/130 (61.54%), Query Frame = 1
Query:    1 TAPIVREKWQVCNQLGGPWATAIA-DSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
            T   +RE+W VCNQLGG  A A+A  + + + +K VPW GVAARL+++  +  SV      G          G      A  G A+CFLPLP  TGLP+HVNGYFELSSNRRD+W GSDM G G LRA W
Sbjct: 2070 TVEALREEWLVCNQLGGGEARALALKAWRDEKVKMVPWVGVAARLSSSSSS--SVSKQSSDGQVGQAAGLGLGKTHASGALAGRAFCFLPLPASTGLPLHVNGYFELSSNRRDVWHGSDMAGAGRLRAQW 2197          
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HJR0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.320e-27
Identity = 72/149 (48.32%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   19 EKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEG-GGXXXXXXXXXXGSKRLP------------------------PAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIW-SGSDMVGDGELRANW 387
            E W VCNQLGG  A+ +A  + A+ ++ VPWAGVAARL      PP V  AEG GG          G   +                         P+  GAAYCFLPLPV TGLP+HVNGYFELSSNRRDIW S  DM GDG  RA W
Sbjct:  357 ETWMVCNQLGGGRASNMASDKAAEHLRLVPWAGVAARLD-----PPPVPCAEGDGGEADGGATMDEGMDAVEVVDGDGVIDDTQTEAGTGAASATGPSSGGAAYCFLPLPVSTGLPIHVNGYFELSSNRRDIWWSADDMSGDGRRRAVW 500          
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAL4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.800e-27
Identity = 62/124 (50.00%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   16 REKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
            +E+W VCNQLGG  A+ +A  +    MK VPWAGVAARL+            EGG                       AYCFLPLPV T LP+HVNGYFELSSNRRD+W G DM GDG+ RA W
Sbjct:  318 KERWMVCNQLGGGNASIMARDKALDHMKLVPWAGVAARLSPD-------CNVEGGN----------------------AYCFLPLPVRTKLPIHVNGYFELSSNRRDVWWGDDMAGDGKARAEW 412          
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTG0_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 1.030e-26
Identity = 60/125 (48.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   13 VREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
            V EK+ +   LGG  A A+A    AK  K +PWAG+AAR+                           G +  P    G+A+CFLPLPV TGLPVHVNGYFELS+NRRDIW GSDM GDGE+R+ W
Sbjct:   49 VSEKYLLFEMLGGDRARAMAVENSAKGHKLLPWAGIAARIERK------------------------GPEPGPTDIEGSAFCFLPLPVRTGLPVHVNGYFELSANRRDIWWGSDMTGDGEMRSKW 149          
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB77_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.160e-26
Identity = 60/126 (47.62%), Postives = 71/126 (56.35%), Query Frame = 1
Query:   10 IVREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVAPPSVFPAEGGGXXXXXXXXXXGSKRLPPAPRGAAYCFLPLPVLTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANW 387
            + +E+W VCNQLGG  A+ +A       MK +PWAGVAARL+   +   + F                          GAAYCFLPLP  T LP HVNGYFELSSNRRD+W G DM GDG  RA+W
Sbjct:  328 VKKERWIVCNQLGGGNASRMAQDPGLSHMKLIPWAGVAARLSP--LVDDTSF-------------------------EGAAYCFLPLPAKTKLPCHVNGYFELSSNRRDVWWGEDMAGDGRARADW 426          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8840.17022.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UBA9.360e-4291.84domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RING-type9.220e-3253.54domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical5.170e-3053.60protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Hypothetical1.190e-2948.03protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
RING-type1.800e-2950.77domain-containing protein n=1 Tax=Tetradesmus obli... [more]
RING-type1.800e-2950.77domain-containing protein n=1 Tax=Tetradesmus obli... [more]
Hypothetical1.320e-2748.32protein (Fragment) n=2 Tax=Odontella aurita TaxID=... [more]
Hypothetical4.800e-2750.00protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical1.030e-2648.00protein (Fragment) n=1 Tax=Amorphochlora amoebifor... [more]
Hypothetical1.160e-2647.62protein (Fragment) n=1 Tax=Attheya septentrionalis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8840contigEcto-sp9_F_contig8840:7..1312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue2.3e-23
Seed eggNOG ortholog115417.EPrPW00000015067
KEGG koko:K17592
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
EggNOG free text desc.zinc finger family protein. Source PGD
EggNOG OGs1MDQ8@121069,28IDA@1,2QQPY@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons3
Model size387
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8840.17022.1prot_Ecto-sp9_F_contig8840.17022.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8840 7..1312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.225346-CDS-Ecto-sp9_F_contig8840:6..3111622930936.225346-CDS-Ecto-sp9_F_contig8840:6..311Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8840 7..311 +
1692278956.826432-CDS-Ecto-sp9_F_contig8840:6..3111692278956.826432-CDS-Ecto-sp9_F_contig8840:6..311Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8840 7..311 +
1622930936.243589-CDS-Ecto-sp9_F_contig8840:803..8271622930936.243589-CDS-Ecto-sp9_F_contig8840:803..827Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8840 804..827 +
1692278956.845022-CDS-Ecto-sp9_F_contig8840:803..8271692278956.845022-CDS-Ecto-sp9_F_contig8840:803..827Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8840 804..827 +
1622930936.2601948-CDS-Ecto-sp9_F_contig8840:1254..13121622930936.2601948-CDS-Ecto-sp9_F_contig8840:1254..1312Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8840 1255..1312 +
1692278956.857787-CDS-Ecto-sp9_F_contig8840:1254..13121692278956.857787-CDS-Ecto-sp9_F_contig8840:1254..1312Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8840 1255..1312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8840.17022.1

>prot_Ecto-sp9_F_contig8840.17022.1 ID=prot_Ecto-sp9_F_contig8840.17022.1|Name=mRNA_Ecto-sp9_F_contig8840.17022.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=129bp
TAPIVREKWQVCNQLGGPWATAIADSEKAKFMKFVPWAGVAARLATTEVA
PPSVFPAEGGGAAGGGEGKGGGSKRLPPAPRGAAYCFLPLPVLTGLPVHV
NGYFELSSNRRDIWSGSDMVGDGELRANW
back to top

mRNA from alignment at Ecto-sp9_F_contig8840:7..1312+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8840.17022.1 ID=mRNA_Ecto-sp9_F_contig8840.17022.1|Name=mRNA_Ecto-sp9_F_contig8840.17022.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1306bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8840:7..1312+ (Ectocarpus species9 EcSCA_722f female)
ACAGCCCCGATAGTACGCGAGAAGTGGCAAGTGTGCAACCAGCTCGGCGG GCCCTGGGCCACGGCCATCGCCGACAGCGAAAAGGCCAAGTTCATGAAGT TCGTCCCCTGGGCCGGGGTCGCCGCGCGCCTGGCCACCACCGAGGTTGCG CCGCCCTCCGTGTTCCCCGCGGAGGGCGGGGGCGCCGCGGGCGGGGGCGA GGGGAAGGGGGGGGGCTCCAAGCGGCTGCCCCCGGCGCCGCGCGGCGCCG CGTACTGCTTTCTGCCGCTCCCGGTGTTGACCGGGTTGCCGGTTCATGTT AACGGGTGAGGCCCGTAAGAACCTACTAGGCGGTGTTGTCTCCCTTTCCG TCGACTGTTGTTGTTGATCACCCTACTACTTTAGGTGGTGCTGTTCTTCT TTCCGTCGACTGTTGTTGTTGATCACCCTATATAATGTGTTGTCCTTCTT TACGTAGGCTGTTGTTGTTGATCTCGCTCTCGATTGTCTTTAGAAAATTT TTAAGTTGCTTGTTTTTCCCGTCACTATAATAGAGCGTCGTCGTATTTTG TCGCCGCGTACTGCTTTCCTGCCGCTCAACGGTTTAAAACAACGACCCTA CTAGACGGTGTTGTCCTCCTCTCCGTTGGCTGTTGTTGTTGACTCATCTC GATCTCGCTTGTCGGTAGGATTTTGAAGTTCCTTCGTTTTTTCCGTCACT AGAGCGTCCTCTGTTTGGGTTTGACTCCCGCCCTCTCGTCCTTCCCGGCG TTTTTGCCATCCCTGTTGTTGGTTATATACGCGGCGGCGTCCACCAGCTA CTTCGAGCTGTCTTCGAACCGGTGAGGTCGACTGACTTGTCTTGTGTGAC TGCTGTTGATTCCCGGACGATGTTTGTTTCTGTAGTATGTTTTTTGCTGC TGACGAGGAGCAAAATATGTCTCCTGGAAGCATGAAACCGCGCTGTGTGG TAGCAGACCATCCAAGCGTTATTTTCACCCCCCTATCGAGGCTCTCAACA GCGAAGTGCGTGTCTACATACTTACCAGGCGGATAACCAAGCGCGCTCGT TTTTTGTCGGCCATGCGTATTCATTGCTCTTGGTGCCCGCTCGACCCTGA CAGCAACCTCGTAGCACGCGCGCGTAGCCATTTTCCGCGCACTCCCTAGT CGACTGCTGTGCATGTTTTTTTATTTTTGCTATCCCTGCTGTATTGGGGT CGCACCCCGGACTAAAACGTTGGGGGTGTTGTCTGTGTACATACGCAGGC GTGACATCTGGAGCGGGTCGGACATGGTGGGCGACGGCGAGCTCCGCGCC AACTGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8840:7..1312+

>mRNA_Ecto-sp9_F_contig8840.17022.1 ID=mRNA_Ecto-sp9_F_contig8840.17022.1|Name=mRNA_Ecto-sp9_F_contig8840.17022.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8840:7..1312+ (Ectocarpus species9 EcSCA_722f female)
ACAGCCCCGATAGTACGCGAGAAGTGGCAAGTGTGCAACCAGCTCGGCGG
GCCCTGGGCCACGGCCATCGCCGACAGCGAAAAGGCCAAGTTCATGAAGT
TCGTCCCCTGGGCCGGGGTCGCCGCGCGCCTGGCCACCACCGAGGTTGCG
CCGCCCTCCGTGTTCCCCGCGGAGGGCGGGGGCGCCGCGGGCGGGGGCGA
GGGGAAGGGGGGGGGCTCCAAGCGGCTGCCCCCGGCGCCGCGCGGCGCCG
CGTACTGCTTTCTGCCGCTCCCGGTGTTGACCGGGTTGCCGGTTCATGTT
AACGGACAGCCCCGATAGTACGCGAGAAGTGGCAAGTGTGCAACCAGCTC
GGCGGGCCCTGGGCCACGGCCATCGCCGACAGCGAAAAGGCCAAGTTCAT
GAAGTTCGTCCCCTGGGCCGGGGTCGCCGCGCGCCTGGCCACCACCGAGG
TTGCGCCGCCCTCCGTGTTCCCCGCGGAGGGCGGGGGCGCCGCGGGCGGG
GGCGAGGGGAAGGGGGGGGGCTCCAAGCGGCTGCCCCCGGCGCCGCGCGG
CGCCGCGTACTGCTTTCTGCCGCTCCCGGTGTTGACCGGGTTGCCGGTTC
ATGTTAACGGCTACTTCGAGCTGTCTTCGAACCGCTACTTCGAGCTGTCT
TCGAACCGGCGTGACATCTGGAGCGGGTCGGACATGGTGGGCGACGGCGA
GCTCCGCGCCAACTGGGCGTGACATCTGGAGCGGGTCGGACATGGTGGGC
GACGGCGAGCTCCGCGCCAACTGG
back to top