mRNA_Ecto-sp9_F_contig884.17021.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig884.17021.1 vs.
Match: Isochorismatase (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM91_ECTSI) HSP 1 Score: 468 bits (1203), Expect = 2.820e-166 Identity = 234/244 (95.90%), Postives = 237/244 (97.13%), Query Frame = 1
Query: 1 MAEEQKEEENGRFLESEPYKWPFDGSFSADNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGFSLIHTREGHRPDLADCPANKRWRSRQIGAGIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFVSTDLDMVLRTRGVRNIVLAGVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFGAVSTSAALVAAMVASSKAKYSV 732
MA+EQKEEENGRFLESEPYKWPFDGSFS DNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGF LIHTREGHRPDLADCPANKRWRSRQIGAGIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFV+TDLDMVLRTRGVRN+VL GVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFG VSTSAALVAAMVASS A SV
Sbjct: 1 MAKEQKEEENGRFLESEPYKWPFDGSFSTDNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGFPLIHTREGHRPDLADCPANKRWRSRQIGAGIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFVATDLDMVLRTRGVRNLVLTGVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFG-VSTSAALVAAMVASSTATESV 243
BLAST of mRNA_Ecto-sp9_F_contig884.17021.1 vs.
Match: Nicotinamidase-related (amidase n=1 Tax=Kaistia soli DSM 19436 TaxID=1122133 RepID=A0A1M5HYT3_9HYPH) HSP 1 Score: 362 bits (930), Expect = 1.030e-124 Identity = 169/225 (75.11%), Postives = 196/225 (87.11%), Query Frame = 1
Query: 31 GRFLESEPYKWPFDGSFSADNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGFSLIHTREGHRPDLADCPANKRWRSRQIGAGIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFVSTDLDMVLRTRGVRNIVLAGVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFGAVSTSAALVAAMV 705
GR + S+PY WPFDG+ +NTA++VIDMQVDFCAPGGYVD MGYDISLTR PIEP++RV +A R +G+ +IHTREGHRPDLAD PANKRWRS++IGAGIGD GPCGRILVRGEPGWEIIPEL P GE +IDKPGKG+FV+TDL++VLR +G+RNIVLAGVTTDVCVHTTMR+AND+GYECVLL DC AAT NH AAI M+K QGGVFGAV+TS AL+A +V
Sbjct: 18 GRTIASDPYPWPFDGNLKPENTALIVIDMQVDFCAPGGYVDSMGYDISLTREPIEPIRRVLDAMRAKGYHIIHTREGHRPDLADLPANKRWRSQRIGAGIGDQGPCGRILVRGEPGWEIIPELQPVEGETIIDKPGKGSFVATDLELVLRQKGIRNIVLAGVTTDVCVHTTMRDANDLGYECVLLSDCTAATKRENHLAAIDMVKMQGGVFGAVATSDALIAGLV 242
BLAST of mRNA_Ecto-sp9_F_contig884.17021.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUZ0_PHATC) HSP 1 Score: 358 bits (918), Expect = 4.530e-123 Identity = 160/223 (71.75%), Postives = 195/223 (87.44%), Query Frame = 1
Query: 34 RFLESEPYKWPFDGSFSADNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGFSLIHTREGHRPDLADCPANKRWRSRQIGAGIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFVSTDLDMVLRTRGVRNIVLAGVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFGAVSTSAALVAAM 702
++++++PY+WP++G +NT ++VIDMQVDFC+ GGYVD MGYDISLTR PIEP+Q+V R +G+ +IHTREGHRPDLADCP NKRWRS QIGA IG +GPCGRILVRGEPGWE+IPEL P GE++IDKPGKG+FV T+LD++LR++G+ NI+LAGVTTDVCVHTTMRN NDMGYEC+LLEDCCAATDP NHAAAISM+KKQGGVFG+ +TS LVAA+
Sbjct: 4 KYVDADPYRWPYNGDLRPENTCIIVIDMQVDFCSKGGYVDTMGYDISLTRAPIEPIQKVLSCMRDQGYHIIHTREGHRPDLADCPPNKRWRSAQIGAEIGSAGPCGRILVRGEPGWELIPELQPLDGEIIIDKPGKGSFVGTNLDLILRSQGIVNIILAGVTTDVCVHTTMRNGNDMGYECLLLEDCCAATDPDNHAAAISMVKKQGGVFGSCTTSDRLVAAL 226
BLAST of mRNA_Ecto-sp9_F_contig884.17021.1 vs.
Match: Cysteine (hydrolase n=1 Tax=Cellvibrio sp. KY-GH-1 TaxID=2303332 RepID=A0A5J6PG97_9GAMM) HSP 1 Score: 358 bits (918), Expect = 5.210e-123 Identity = 163/223 (73.09%), Postives = 190/223 (85.20%), Query Frame = 1
Query: 34 RFLESEPYKWPFDGSFSADNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGFSLIHTREGHRPDLADCPANKRWRSRQIGAGIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFVSTDLDMVLRTRGVRNIVLAGVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFGAVSTSAALVAAM 702
R+L S PYKWP+DG DNTA+++IDMQ DFC GGYVD MGYDI+LTR PIEPL+++ A R GF +IHTREGHRPDLAD PANKRWRSRQIGAGIGD+GPCG+IL+RGEPGWEIIPELAP GE++IDKPGKG+F +TDL+MVL RG++NI+L G+TTDVCVHTTMR AND G+ECVLL DCCAATDP NH AAI+MI QGGVFGAV+TS L+AA+
Sbjct: 10 RYLNSTPYKWPYDGDLQPDNTALIIIDMQTDFCGKGGYVDTMGYDINLTRAPIEPLRKLLPAMRAAGFHIIHTREGHRPDLADLPANKRWRSRQIGAGIGDAGPCGKILIRGEPGWEIIPELAPIEGEIIIDKPGKGSFYATDLEMVLHLRGIKNIILTGITTDVCVHTTMREANDRGFECVLLADCCAATDPANHNAAIAMIHMQGGVFGAVATSTELLAAL 232
BLAST of mRNA_Ecto-sp9_F_contig884.17021.1 vs.
Match: Cysteine (hydrolase falmily protein n=23 Tax=Herbaspirillum TaxID=963 RepID=D8IPA6_HERSS) HSP 1 Score: 355 bits (910), Expect = 7.750e-122 Identity = 164/226 (72.57%), Postives = 195/226 (86.28%), Query Frame = 1
Query: 28 NGRFLESEPYKWPFDGSFSADNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGFSLIHTREGHRPDLADCPANKRWRSRQIGA---GIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFVSTDLDMVLRTRGVRNIVLAGVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFGAVSTSAALVA 696
+ RF+++EPY WP+DG+ + NTA++VIDMQ DFC GGYVDKMGYD+SLTR PIEP+++V A R G+++IHTREGHRPDL+D PANKRWRSRQIGA GIGD+GPCGRILVRGEPGWEIIPELAP AGE++IDKPGKG+F +TDL+M+L TRG+RNIVL G+TTDVCVHTTMR AND G+ECV+L DCC ATD NH AA+SMIK QGGVFGAV+ SAAL+A
Sbjct: 2 SARFIQAEPYPWPYDGALTPANTALIVIDMQTDFCGIGGYVDKMGYDLSLTRAPIEPIRKVLAAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGANGVGIGDAGPCGRILVRGEPGWEIIPELAPIAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHTTMREANDRGFECVMLSDCCGATDYNNHLAALSMIKMQGGVFGAVADSAALIA 227
BLAST of mRNA_Ecto-sp9_F_contig884.17021.1 vs.
Match: Cysteine (hydrolase n=13 Tax=Pseudomonadales TaxID=72274 RepID=A0A2D9VWQ7_PSESP) HSP 1 Score: 354 bits (908), Expect = 1.460e-121 Identity = 157/220 (71.36%), Postives = 191/220 (86.82%), Query Frame = 1
Query: 34 RFLESEPYKWPFDGSFSADNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGFSLIHTREGHRPDLADCPANKRWRSRQIGAGIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFVSTDLDMVLRTRGVRNIVLAGVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFGAVSTSAALV 693
R+L+S PY WP++G+ + +NTA++VIDMQ DFC GGYVD MGYD+SLTR PIEP+ RV E R++GF +IHTREGHRPDL+D PANKRWRS++IGAGIGD+GPCGRILVRGEPGWEIIPELAP GE++IDKPGKG+F +TDL+++LRTRG+ NI+LAG+TTDVCVHTTMR AND G+EC+LLEDCC ATD NH AA+SM+K QGGVFGA+ SA L+
Sbjct: 4 RYLQSAPYPWPYNGNLTPENTALIVIDMQTDFCGKGGYVDSMGYDLSLTRAPIEPISRVLEVLREQGFWIIHTREGHRPDLSDLPANKRWRSQRIGAGIGDTGPCGRILVRGEPGWEIIPELAPIDGEIIIDKPGKGSFCATDLELILRTRGIENIILAGITTDVCVHTTMREANDRGFECILLEDCCGATDHANHLAALSMVKMQGGVFGAIGDSAMLI 223
BLAST of mRNA_Ecto-sp9_F_contig884.17021.1 vs.
Match: Cysteine (hydrolase n=4 Tax=Rhodocyclales TaxID=206389 RepID=A0A4Y6KYP2_9RHOO) HSP 1 Score: 353 bits (905), Expect = 3.880e-121 Identity = 163/221 (73.76%), Postives = 193/221 (87.33%), Query Frame = 1
Query: 40 LESEPYKWPFDGSFSADNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGFSLIHTREGHRPDLADCPANKRWRSRQIGAGIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFVSTDLDMVLRTRGVRNIVLAGVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFGAVSTSAALVAAM 702
L+++PY WP++G + NTA+++IDMQ DFC GGYVDKMGYD+SLTR PIEP+ RV R++GF +IHTREGHRPDLAD PANKRWRS++IGAGIGD GPCGRILVRGEPGWEIIPELAP AGE+VIDKPGKG+F +TDL++VLRTRG+RNIVL G+TTDVCVHTTMR+ANDMG+EC+LLEDCC ATD NH AAI MIK QGGVFGAV+ S+ L+AA+
Sbjct: 6 LDADPYPWPWNGDLTPANTALVIIDMQTDFCGVGGYVDKMGYDLSLTRAPIEPIGRVLATMRRKGFFIIHTREGHRPDLADLPANKRWRSQRIGAGIGDPGPCGRILVRGEPGWEIIPELAPLAGEVVIDKPGKGSFYATDLELVLRTRGIRNIVLTGITTDVCVHTTMRDANDMGFECLLLEDCCGATDHGNHLAAIKMIKMQGGVFGAVADSSTLLAAL 226
BLAST of mRNA_Ecto-sp9_F_contig884.17021.1 vs.
Match: Cysteine (hydrolase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019B7C4C5) HSP 1 Score: 352 bits (903), Expect = 7.830e-121 Identity = 161/220 (73.18%), Postives = 187/220 (85.00%), Query Frame = 1
Query: 34 RFLESEPYKWPFDGSFSADNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGFSLIHTREGHRPDLADCPANKRWRSRQIGAGIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFVSTDLDMVLRTRGVRNIVLAGVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFGAVSTSAALV 693
R++ ++PY WP++G +NT V+VIDMQ DFC PGGYVDKMGYD+SLTR PIEP++RV AAR GF +IHTREGHRPDL+D PANKRWRS++IGAGIGD+GPCGRIL RGEPGWEIIPELAP GE +IDKPGKG+F +TDLDM+LR +G++NI L G+TTDVCVHTTMR AND GYECVLLEDC ATDP NHAAA+ MIK QGGVFGAV+TS A V
Sbjct: 3 RYVPADPYAWPYNGDLRPENTVVVVIDMQTDFCGPGGYVDKMGYDLSLTRAPIEPIKRVLAAARAGGFHIIHTREGHRPDLSDLPANKRWRSQRIGAGIGDAGPCGRILTRGEPGWEIIPELAPLPGEAIIDKPGKGSFYATDLDMLLRGKGIKNIALCGITTDVCVHTTMREANDRGYECVLLEDCTGATDPGNHAAALKMIKMQGGVFGAVATSVAFV 222
BLAST of mRNA_Ecto-sp9_F_contig884.17021.1 vs.
Match: Cysteine (hydrolase n=1 Tax=Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 TaxID=1797562 RepID=A0A1F4JHK8_9BURK) HSP 1 Score: 352 bits (903), Expect = 8.400e-121 Identity = 163/223 (73.09%), Postives = 192/223 (86.10%), Query Frame = 1
Query: 34 RFLESEPYKWPFDGSFSADNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGFSLIHTREGHRPDLADCPANKRWRSRQIGAGIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFVSTDLDMVLRTRGVRNIVLAGVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFGAVSTSAALVAAM 702
++L ++PY WP+D S + NTA+++IDMQ DFC GGYVDKMGYD+SLTRGPI P++ V A R++GF +IHTREGHRPDL+D PANKRWRSR+IGAGIGD GPCGRILVRGEPGWEII ELAP AGE++IDKPGKG+F +TDL+MVL TRG+RNIVL G+TTDVCVHTTMR+AND G+ECVLLEDCC ATD NH AAI+MIK QGGVFGAVS S L+AA+
Sbjct: 4 KYLNADPYPWPYDSSLAPHNTALVIIDMQTDFCGIGGYVDKMGYDLSLTRGPIAPIKAVLAAMREQGFQIIHTREGHRPDLSDLPANKRWRSRRIGAGIGDEGPCGRILVRGEPGWEIIDELAPLAGEVIIDKPGKGSFYATDLEMVLHTRGIRNIVLTGITTDVCVHTTMRDANDRGFECVLLEDCCGATDIGNHHAAINMIKMQGGVFGAVSDSKKLLAAL 226
BLAST of mRNA_Ecto-sp9_F_contig884.17021.1 vs.
Match: Cysteine (hydrolase n=1 Tax=Terrihabitans soli TaxID=708113 RepID=A0A6S6QP35_9HYPH) HSP 1 Score: 352 bits (902), Expect = 1.820e-120 Identity = 166/224 (74.11%), Postives = 190/224 (84.82%), Query Frame = 1
Query: 31 GRFLESEPYKWPFDGSFSADNTAVLVIDMQVDFCAPGGYVDKMGYDISLTRGPIEPLQRVFEAARKEGFSLIHTREGHRPDLADCPANKRWRSRQIGAGIGDSGPCGRILVRGEPGWEIIPELAPAAGELVIDKPGKGAFVSTDLDMVLRTRGVRNIVLAGVTTDVCVHTTMRNANDMGYECVLLEDCCAATDPLNHAAAISMIKKQGGVFGAVSTSAALVAAM 702
G+ + S+PY WPFDG DNTA++VIDMQVDFCAPGGYVD MGYDISLTR PI+P+Q V A R+ G+ +IHTREGHRPDLAD PANKRWRS++IGAGIGD GPCGRILVRGEPGWEIIPEL P E+VIDKPGKG+FV+TDL++VL+TR +RNIVL GVTTDVCVHTTMR+ANDMGYEC+LL DC AAT NH AAI MIK QGGVFGAV+TS L+ A+
Sbjct: 17 GKTIASDPYPWPFDGDLRPDNTALIVIDMQVDFCAPGGYVDVMGYDISLTRAPIKPIQNVLAAMRRGGYHIIHTREGHRPDLADLPANKRWRSQRIGAGIGDQGPCGRILVRGEPGWEIIPELQPEKDEIVIDKPGKGSFVATDLELVLKTRRIRNIVLTGVTTDVCVHTTMRDANDMGYECLLLSDCTAATKVENHLAAIDMIKMQGGVFGAVATSDVLIEAI 240 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig884.17021.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig884.17021.1 >prot_Ecto-sp9_F_contig884.17021.1 ID=prot_Ecto-sp9_F_contig884.17021.1|Name=mRNA_Ecto-sp9_F_contig884.17021.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=246bp MAEEQKEEENGRFLESEPYKWPFDGSFSADNTAVLVIDMQVDFCAPGGYVback to top mRNA from alignment at Ecto-sp9_F_contig884:24166..27026- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig884.17021.1 ID=mRNA_Ecto-sp9_F_contig884.17021.1|Name=mRNA_Ecto-sp9_F_contig884.17021.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2861bp|location=Sequence derived from alignment at Ecto-sp9_F_contig884:24166..27026- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig884:24166..27026- >mRNA_Ecto-sp9_F_contig884.17021.1 ID=mRNA_Ecto-sp9_F_contig884.17021.1|Name=mRNA_Ecto-sp9_F_contig884.17021.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1476bp|location=Sequence derived from alignment at Ecto-sp9_F_contig884:24166..27026- (Ectocarpus species9 EcSCA_722f female)back to top |