mRNA_Ecto-sp9_F_contig8827.17009.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8827.17009.1
Unique NamemRNA_Ecto-sp9_F_contig8827.17009.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8827.17009.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P4_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 4.450e-8
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:  163 EGSCGQGPKGHRDRTLAAEEAGSPPREGRSVDPRQ 267
            E SCGQGPKGHRDR  AAEEAGSPPREG SVDP Q
Sbjct:  179 EASCGQGPKGHRDRAPAAEEAGSPPREGGSVDPWQ 213
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8827.17009.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.450e-885.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8827contigEcto-sp9_F_contig8827:4046..5472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size332
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8827.17009.1prot_Ecto-sp9_F_contig8827.17009.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8827 4047..5472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930934.3648438-CDS-Ecto-sp9_F_contig8827:4046..40921622930934.3648438-CDS-Ecto-sp9_F_contig8827:4046..4092Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 4047..4092 -
1692278955.9576447-CDS-Ecto-sp9_F_contig8827:4046..40921692278955.9576447-CDS-Ecto-sp9_F_contig8827:4046..4092Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 4047..4092 -
1622930934.3929992-CDS-Ecto-sp9_F_contig8827:4385..45061622930934.3929992-CDS-Ecto-sp9_F_contig8827:4385..4506Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 4386..4506 -
1692278955.9726374-CDS-Ecto-sp9_F_contig8827:4385..45061692278955.9726374-CDS-Ecto-sp9_F_contig8827:4385..4506Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 4386..4506 -
1622930934.4100895-CDS-Ecto-sp9_F_contig8827:5309..54721622930934.4100895-CDS-Ecto-sp9_F_contig8827:5309..5472Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 5310..5472 -
1692278955.9837658-CDS-Ecto-sp9_F_contig8827:5309..54721692278955.9837658-CDS-Ecto-sp9_F_contig8827:5309..5472Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8827 5310..5472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8827.17009.1

>prot_Ecto-sp9_F_contig8827.17009.1 ID=prot_Ecto-sp9_F_contig8827.17009.1|Name=mRNA_Ecto-sp9_F_contig8827.17009.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=110bp
RAASGRRGRGHRLPGAVCCRSGNFARSAARHEVGSAARREVGSAAAAGPR
DGAGEGSCGQGPKGHRDRTLAAEEAGSPPREGRSVDPRQLSHRRSVGVAN
PPDIILDNIT
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mRNA from alignment at Ecto-sp9_F_contig8827:4046..5472-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8827.17009.1 ID=mRNA_Ecto-sp9_F_contig8827.17009.1|Name=mRNA_Ecto-sp9_F_contig8827.17009.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1427bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8827:4046..5472- (Ectocarpus species9 EcSCA_722f female)
AGGGCCGCATCCGGCCGTCGCGGGCGCGGTCATCGTCTCCCTGGTGCTGT
TTGTTGTCGGAGCGGCAATTTTGCAAGGTCGGCGGCGCGTCATGAGGTTG
GGTCGGCGGCGCGTCGTGAGGTTGGGTCGGCGGCGGCGGCGGGTCCCAGG
GATGGAGCTGGAGGTAATGTCCCATCACATTTTTCCTGCCAATGGAACGG
TGGCGCTTGCAACTACAGTCACCCAGCATCTTTCCTCTCTCGATAGAGAG
CGAAGAGCAGGAAGAACATCTGCTTAGCTCCTCTCTCGCTCTCTCTCTCA
AACACAATAACGAACCAACCGTTCTTTTTTCACACGCAGAGATTCGTTTA
ATGATTGCGGAACACTTGTAGGAATCTTGGAATTGATCCGTTTAAGGGTG
TGGTTTGGTGTGAGTCGGCAAAAAAGCTCGCGCTGTCATTCCCATCATGA
TGTCTCTCCACCCCCCCTCCCTTCCTCGGGCTAACGGATGGTTGTTGGTT
GTTACTATTAGCGCTGAAGGTTCAACATCCACCGCATACGTACATACATA
CGTGCACAACAAACCTACCTGCAAAGGGCTGAGCCTTGGCAAACTGCCCC
GAGTCGTCGTCCGTCGCATTCGAAAGGCGGTCCTCGAGGCCGCGAGTCTC
AATGGTAGCCGCCTCAAGACTAGCCTTTCCGTTGACATGGCAAGCAGAAG
TTGAACGTTAAGCGCTACGGTTGCCAGCCGTCTGCAAGAGAATGAAAAAT
ACCGGTATAGAAGTAGAATTGTTTTTCGCCTTGGCTTTGCTTCTTGGACA
CCCCACCAAGGTCCCCGCTGTGGCGCGGCAAAGAATGACCCGACGCAGAG
TTTCGTGCAGCGTGTATAAAAACAGTAACCAGCGAGCCTCAACACTGCAC
AGTCATGAGTTTGCGCTTTCGAACCAAACACCAACCTCGGTGGCGCATAC
CCTGGTCGTATTACAGAAGGAAGCTGCGGACAAGGCCCGAAAGGCCACCG
CGACCGAACACTAGCGGCAGAGGAGGCAGGTTCGCCACCTCGCGAAGGAC
GTAGCGTTGACCCGCGGCAGCTGTCGCACAGGCGCAGGTGGGTCGAGAAG
GCGGTTTATGGTCTACTGGTGGTCGTTTTTCGCTGCTGGTGTAATTCAAA
ATACCGGTAGAACATTTGTTCACCTCGATTCTGTCACCGTCTCATCTAGT
CATGGCATTCGAAAGCGGCTTCGGGAACTCAATCCTCACGAGCACCGAAT
TTGGCGGTTGAAAGCAGAACACTGCGCTTGCAAATGTGAAATCCGTTTGT
ATGTTACTCACTAATAGACTATAAATGTATCAAACACTCTTTTCATTGAT
ACGAAATGCGGATTGTCCCCATCTCGCCAGTGTTGGAGTCGCGAACCCGC
CAGATATTATTCTAGACAACATCACCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8827:4046..5472-

>mRNA_Ecto-sp9_F_contig8827.17009.1 ID=mRNA_Ecto-sp9_F_contig8827.17009.1|Name=mRNA_Ecto-sp9_F_contig8827.17009.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8827:4046..5472- (Ectocarpus species9 EcSCA_722f female)
AGGGCCGCATCCGGCCGTCGCGGGCGCGGTCATCGTCTCCCTGGTGCTGT
TTGTTGTCGGAGCGGCAATTTTGCAAGGTCGGCGGCGCGTCATGAGGTTG
GGTCGGCGGCGCGTCGTGAGGTTGGGTCGGCGGCGGCGGCGGGTCCCAGG
GATGGAGCTGGAGAGGGCCGCATCCGGCCGTCGCGGGCGCGGTCATCGTC
TCCCTGGTGCTGTTTGTTGTCGGAGCGGCAATTTTGCAAGGTCGGCGGCG
CGTCATGAGGTTGGGTCGGCGGCGCGTCGTGAGGTTGGGTCGGCGGCGGC
GGCGGGTCCCAGGGATGGAGCTGGAGAAGGAAGCTGCGGACAAGGCCCGA
AAGGCCACCGCGACCGAACACTAGCGGCAGAGGAGGCAGGTTCGCCACCT
CGCGAAGGACGTAGCGTTGACCCGCGGCAGCTGTCGCACAGGCGCAGAAG
GAAGCTGCGGACAAGGCCCGAAAGGCCACCGCGACCGAACACTAGCGGCA
GAGGAGGCAGGTTCGCCACCTCGCGAAGGACGTAGCGTTGACCCGCGGCA
GCTGTCGCACAGGCGCAGTGTTGGAGTCGCGAACCCGCCAGATATTATTC
TAGACAACATCACCTGTTGGAGTCGCGAACCCGCCAGATATTATTCTAGA
CAACATCACC
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