mRNA_Ecto-sp9_F_contig8824.17006.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8824.17006.1
Unique NamemRNA_Ecto-sp9_F_contig8824.17006.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8824.17006.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8824contigEcto-sp9_F_contig8824:84..697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size615
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.9726732-UTR-Ecto-sp9_F_contig8824:83..3401622930933.9726732-UTR-Ecto-sp9_F_contig8824:83..340Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8824 84..340 +
1692278955.7641408-UTR-Ecto-sp9_F_contig8824:83..3401692278955.7641408-UTR-Ecto-sp9_F_contig8824:83..340Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8824 84..340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.99409-CDS-Ecto-sp9_F_contig8824:340..6971622930933.99409-CDS-Ecto-sp9_F_contig8824:340..697Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8824 341..697 +
1692278955.7734425-CDS-Ecto-sp9_F_contig8824:340..6971692278955.7734425-CDS-Ecto-sp9_F_contig8824:340..697Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8824 341..697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8824.17006.1prot_Ecto-sp9_F_contig8824.17006.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8824 341..697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8824.17006.1

>prot_Ecto-sp9_F_contig8824.17006.1 ID=prot_Ecto-sp9_F_contig8824.17006.1|Name=mRNA_Ecto-sp9_F_contig8824.17006.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
MFVCTHQLLLRGRMPHTATSAVSACAKGHGSPVDECSITAHFLLFLSSKS
SGERLWCGQCHWSMTTPHRPRSYQSSVSVCYMTKSKSSAPTWGFVPVPCQ
TKRRAMNLWGHKFGRYGGQ
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mRNA from alignment at Ecto-sp9_F_contig8824:84..697+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8824.17006.1 ID=mRNA_Ecto-sp9_F_contig8824.17006.1|Name=mRNA_Ecto-sp9_F_contig8824.17006.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=614bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8824:84..697+ (Ectocarpus species9 EcSCA_722f female)
TTTTGGTTTAGCCTAATGTACGTGCACAAACACCGGGCAGAAGCTGGAAT
GCTAGCTGGAACGCTTTTCGGGACGGCAATTTGCGCGTACACCGCATCTT
GAATAATAGGTACTGCTGCAATGCCGTGTGGCATTGGTTGATGGTGGCGG
AAGAGCCCTGATTGGTTGGTTGGGCTTTCGTGAGGGTTCTAGTGCTTTAG
GTCACCCCTAGTTGGTTGTTGACATAGACTTGCAACATATCCTTGGGAAT
TTTAACGATGTTCGTGTGCACCCACCAGCTACTCCTTCGGGGGAGAATGC
CGCACACCGCCACCTCTGCTGTCTCAGCATGTGCTAAGGGTCACGGCTCT
CCCGTGGATGAGTGCTCAATTACAGCCCATTTTTTGCTTTTCTTAAGCAG
TAAAAGTTCGGGAGAACGCTTGTGGTGCGGCCAGTGCCACTGGTCTATGA
CGACTCCACACAGACCACGTTCGTATCAGTCATCAGTCAGTGTTTGTTAC
ATGACAAAGAGTAAATCCTCAGCACCAACATGGGGCTTCGTTCCAGTACC
ATGTCAAACAAAGCGGAGAGCGATGAATTTGTGGGGGCACAAATTTGGAC
GTTACGGAGGACAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8824:84..697+

>mRNA_Ecto-sp9_F_contig8824.17006.1 ID=mRNA_Ecto-sp9_F_contig8824.17006.1|Name=mRNA_Ecto-sp9_F_contig8824.17006.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8824:84..697+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCGTGTGCACCCACCAGCTACTCCTTCGGGGGAGAATGCCGCACAC
CGCCACCTCTGCTGTCTCAGCATGTGCTAAGGGTCACGGCTCTCCCGTGG
ATGAGTGCTCAATTACAGCCCATTTTTTGCTTTTCTTAAGCAGTAAAAGT
TCGGGAGAACGCTTGTGGTGCGGCCAGTGCCACTGGTCTATGACGACTCC
ACACAGACCACGTTCGTATCAGTCATCAGTCAGTGTTTGTTACATGACAA
AGAGTAAATCCTCAGCACCAACATGGGGCTTCGTTCCAGTACCATGTCAA
ACAAAGCGGAGAGCGATGAATTTGTGGGGGCACAAATTTGGACGTTACGG
AGGACAGATGTTCGTGTGCACCCACCAGCTACTCCTTCGGGGGAGAATGC
CGCACACCGCCACCTCTGCTGTCTCAGCATGTGCTAAGGGTCACGGCTCT
CCCGTGGATGAGTGCTCAATTACAGCCCATTTTTTGCTTTTCTTAAGCAG
TAAAAGTTCGGGAGAACGCTTGTGGTGCGGCCAGTGCCACTGGTCTATGA
CGACTCCACACAGACCACGTTCGTATCAGTCATCAGTCAGTGTTTGTTAC
ATGACAAAGAGTAAATCCTCAGCACCAACATGGGGCTTCGTTCCAGTACC
ATGTCAAACAAAGCGGAGAGCGATGAATTTGTGGGGGCACAAATTTGGAC
GTTACGGAGGACAG
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