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Homology
BLAST of mRNA_Ecto-sp9_F_contig8815.17000.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ4_ECTSI) HSP 1 Score: 453 bits (1166), Expect = 1.430e-151 Identity = 368/447 (82.33%), Postives = 372/447 (83.22%), Query Frame = 1
Query: 1 RAPLSSTRSLRQMWRDRDSGESTPRASTARAGSLPSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--STIYSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSEGDGRGXXXXXXXXXGRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKISQQSXXXXXXXXXXXXXXXXXXXXXXXXX----AGTAAPLVTSGPGEEQLSIAEMVARGIGAARQDPAAHPGAGAGERLFDGRRNPNPSLRGATALGADGGVGTEAGAAVPRARVVQVEGGSAVAEAPATTMQRANGDAGAVAAAGLKGGEFSSVTAAAGAPAAPGHGGAQREVGTAEAVAVAVTAAQVPPSVEATMVGXXXXXXXXXXXXXXQPVGVEAGAVRVSISQLLDAKRAQLQSILDAPHIQA 1323
RAPLSSTRSLRQMWRDRDSGESTPRASTARAGSLPSSA XXXXXXXXXXXXXXXXXXXXXXXXXXX STIYSSR FSEGD XXXXXXXXX RSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKISQQSXXXXXXXXXXXXXXXXXXXXXXXXX AGTAAPLVTS PGEEQLSIAE VARGIGAARQDPAA PGAGAGE L DGRRNPNPSLRGATALGADGG+GTEA AAVP+ARVVQV+GGSAVAEAPA TMQRA GDAGAVAAAGLKGGEFSS TAAAGAPAAPG+G AQ EVGTAEAVAVAVTAAQVPPSVEATMVGXXXXXXXXXXX QPVGVEAGAVRVSISQLLDAKRAQLQSILDAPHIQA
Sbjct: 194 RAPLSSTRSLRQMWRDRDSGESTPRASTARAGSLPSSAVGGAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMGAGGEGGGPLSVRGAAMRHSSRGFSEGDXXXXXXXXXXXXXRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKISQQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAPLVTSRPGEEQLSIAEKVARGIGAARQDPAAQPGAGAGEGLLDGRRNPNPSLRGATALGADGGLGTEAAAAVPKARVVQVDGGSAVAEAPAMTMQRAGGDAGAVAAAGLKGGEFSSFTAAAGAPAAPGYGDAQGEVGTAEAVAVAVTAAQVPPSVEATMVGXXXXXXXXXXX---QPVGVEAGAVRVSISQLLDAKRAQLQSILDAPHIQA 637
BLAST of mRNA_Ecto-sp9_F_contig8815.17000.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD62_9PHAE) HSP 1 Score: 233 bits (595), Expect = 9.710e-67 Identity = 222/442 (50.23%), Postives = 228/442 (51.58%), Query Frame = 1
Query: 1 RAPLSSTRSLRQMWRDRDSGESTPRASTARAGSLPSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-STIYSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSEGDGRGXXXXXXXXXGRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKISQQSXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAPLVTSGPGEEQLSIAEMVARGIGAARQDPAAHPGAGAGERLFDGRRNPNPSLRGATALGADGGVGTEAGAAVPRARVVQVEGGSAVAEAPATTMQRANGDAGAVAAAGLKGGEFSSVTAAAGAPAAPGHGGAQREVGTAEAVAVAVTAAQVPPSVEATMVGXXXXXXXXXXXXXXQPVGVEAGAVRVSISQLLDAKRAQLQSILDAPHIQA 1323
RAPLSSTRSLRQ+WRDRDSGESTPRASTARAGSLPS A XXXXXXXXXXXXXXXXXXXXXXXXXXX STIYSSR FSEGDGRG GRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVT + I + +R +GDAGAVAA+G KGGEFSSVTAAAGA AAPGHGGAQREVGTAEAVAVAVTAAQVPPSVEATMVG QPVGVEAGAVRVSISQLLDAKRAQLQSILDAPHIQA
Sbjct: 316 RAPLSSTRSLRQIWRDRDSGESTPRASTARAGSLPSGAGGEAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMGAGGEGGGPLSVRGAAMRHSSRGFSEGDGRGNGG------GRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVT-------------------------------------------------------MCIRD------------------------------------------------------------------------------KREDGDAGAVAASGPKGGEFSSVTAAAGALAAPGHGGAQREVGTAEAVAVAVTAAQVPPSVEATMVGGAGGISSEPQKQQ-QPVGVEAGAVRVSISQLLDAKRAQLQSILDAPHIQA 617
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 460.7 |
| Seed ortholog evalue | 7.8e-127 |
| Seed eggNOG ortholog | 2880.D8LLZ4 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| Ec32 ortholog description | Ankyrin-repeat protein |
| Ec32 ortholog | Ec-14_002230.1 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1326 |
| Cds size | 1326 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930933.3099236-CDS-Ecto-sp9_F_contig8815:2679..2910 | 1622930933.3099236-CDS-Ecto-sp9_F_contig8815:2679..2910 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8815 2680..2910 - |
| 1692278955.413178-CDS-Ecto-sp9_F_contig8815:2679..2910 | 1692278955.413178-CDS-Ecto-sp9_F_contig8815:2679..2910 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8815 2680..2910 - |
| 1622930933.327721-CDS-Ecto-sp9_F_contig8815:3728..4265 | 1622930933.327721-CDS-Ecto-sp9_F_contig8815:3728..4265 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8815 3729..4265 - |
| 1692278955.424262-CDS-Ecto-sp9_F_contig8815:3728..4265 | 1692278955.424262-CDS-Ecto-sp9_F_contig8815:3728..4265 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8815 3729..4265 - |
| 1622930933.343469-CDS-Ecto-sp9_F_contig8815:5112..5670 | 1622930933.343469-CDS-Ecto-sp9_F_contig8815:5112..5670 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8815 5113..5670 - |
| 1692278955.4337826-CDS-Ecto-sp9_F_contig8815:5112..5670 | 1692278955.4337826-CDS-Ecto-sp9_F_contig8815:5112..5670 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8815 5113..5670 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8815.17000.1 >prot_Ecto-sp9_F_contig8815.17000.1 ID=prot_Ecto-sp9_F_contig8815.17000.1|Name=mRNA_Ecto-sp9_F_contig8815.17000.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=442bp
RAPLSSTRSLRQMWRDRDSGESTPRASTARAGSLPSSAGGGAGQGGAAAA AAAAGAAAAAAAAAGGCFDGGGGSTIYSSRGGSISRKGSMSLDGFSTASM GAGGEGGGPLSGRGGAMRHSSRGFSEGDGRGDGGGGVGGGGRSPRWTVGA AVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKISQQS SPASPPPRRPMLSSYAGGGGGGGGGAGTAAPLVTSGPGEEQLSIAEMVAR GIGAARQDPAAHPGAGAGERLFDGRRNPNPSLRGATALGADGGVGTEAGA AVPRARVVQVEGGSAVAEAPATTMQRANGDAGAVAAAGLKGGEFSSVTAA AGAPAAPGHGGAQREVGTAEAVAVAVTAAQVPPSVEATMVGGGGGISSEQ QQQQQQPVGVEAGAVRVSISQLLDAKRAQLQSILDAPHIQA* back to topmRNA from alignment at Ecto-sp9_F_contig8815:2680..5670- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig8815.17000.1 ID=mRNA_Ecto-sp9_F_contig8815.17000.1|Name=mRNA_Ecto-sp9_F_contig8815.17000.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2991bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8815:2680..5670- (Ectocarpus species9 EcSCA_722f female) AGGGCTCCGCTGAGCTCGACGCGATCGCTCCGACAGATGTGGAGGGACCG
GGACAGCGGCGAGAGCACGCCGCGGGCAAGCACCGCGCGCGCGGGCTCCC
TGCCGAGCAGCGCGGGAGGCGGAGCCGGCCAAGGAGGAGCGGCGGCGGCG
GCGGCGGCAGCGGGGGCCGCCGCGGCGGCGGCGGCGGCGGCGGGCGGCTG
CTTCGACGGCGGGGGGGGCTCGACGATCTACTCCTCCCGCGGGGGGTCGA
TCTCTCGGAAGGGGTCGATGTCCCTCGATGGGTTTTCCACGGCCTCCATG
GGGGCCGGCGGAGAGGGCGGTGGTCCTCTGTCGGGACGAGGGGGCGCCAT
GAGACATTCGTCGAGGGGCTTCTCGGAAGGGGATGGGAGGGGGGATGGGG
GCGGGGGCGTGGGTGGGGGCGGGCGCAGTCCCCGGTGGACGGTGGGCGCC
GCGGTGGCCGGGAGGCTGGAGGGGATGAGGGCGCGCGAGCTGGGCGCGAG
CCTCCGGGCGAAGGTGCAGGAGAACGAGGCCATGAAGCGATACGTCGAGT
CCGTGACGGTGCGTTGTTTTTTGCGGCTGCTGGCGTTGTGCAAAATTGCG
TGGCAACGGGTTTGGTGATTGTGTGCGGGTGGGTCAGGTATTTGTGTGCG
GGTGGGTCAGGTAACCTTCCTTGTCTATTAGGCAGTTCATGCAACTGTTG
ACTGTTGTCGGTAGGTGTCACGGATGGTGGTGGTGTAGATGTTGTTTCTT
GTCGTCTTTGTCATCGTTGTCACGCACTCCAAGTATCCGCCCTTTCTTTT
TTCGGTTTCTGACCATGTCACAACGCAACGTCGCCTCGGTGTCAATTTGT
TCGTTGGCACGCGCACTATAACAACAACCCATCATCTTTGACGCAGGGTA
CGAGACAGACAGCAGTCTCGTGACTTGCGAGATAGACCTATTCGCAGACC
TTTGCCCACCGTAGGGAAGTCGATTCGCGGGCGTGTTAGTCTCGTCGGTG
GGTTCAGGTTTTTTGGTGTGAAGTTTTGTTGGTAATTTTGCGGCCGTGAA
GAGTGTATGGCCAGCATGCCGTAGGTTGCATAATATACCGCACCCCCTGA
ACTGATGTTCAAAAGCTCGATCACTCCACGACGACGAAGAGGATGCCATA
ATCAAACGATATTTTTTCGGAAAGCTCTGGACGAGACGCGGTTCCAGCGT
CGCCATTTTCGGCACCGTCACCTTGTTTGCGGCTTGCAGAGTAGGCGAGC
TTTGAAAATCGGTCCAGGGGGGGGTGGGGGTGGTATCATAGACAACGTTA
CGGTAGATTCCGCAACAACGCAATTTCGTCCATGTGATCAACGAGCCACC
TGTTTGATGCATCATCATCACGGTGCTCGAATCGATTTTTGCCGCCGCCG
GGCAGGAGGAGATGCGCGCGCTCCAGCAGAAGATCTCGCAGCAGTCGTCG
CCGGCCTCTCCCCCGCCGCGGCGGCCGATGCTGTCCTCCTACGCGGGAGG
AGGAGGAGGAGGAGGAGGAGGAGCCGGCACGGCGGCACCCTTGGTGACAA
GCGGGCCCGGGGAGGAGCAGCTCTCCATCGCCGAGATGGTGGCCCGCGGC
ATCGGAGCGGCACGGCAAGACCCCGCCGCCCACCCCGGCGCCGGCGCCGG
CGAAAGACTCTTTGATGGCCGCAGGAACCCCAACCCCTCGCTGCGGGGGG
CGACGGCGCTTGGCGCGGACGGGGGTGTGGGGACGGAGGCGGGTGCGGCG
GTGCCCCGGGCACGGGTGGTTCAGGTAGAGGGGGGCTCGGCGGTAGCGGA
GGCGCCCGCTACGACGATGCAGCGGGCGAATGGTGACGCCGGAGCGGTGG
CGGCCGCGGGGCTAAAGGGGGGCGAGTTTTCGTCGGTCACAGCAGCAGCA
GGAGCACCTGCTGCTCCTGGGCATGGGGGTGCGCAGAGAGAGGTGAGAGG
TTGTTGGCAATGTGGACGTGCCTTGATGGCCTTGCCTGGTTTTTTGTCGG
CGGGGGGGGGTGGGGCGTGTGTGGAGCAGTGGTACCCCCATCGCGGCGCG
ACTGGCCGTGCATGGCCCGCTGTACATGCATGTGCGGTGGGCTCTTTTCA
CGCGTCGTCTTGGTTGGTAGATAGGTGGCTTGTTGATGCTGTAGCGCGTG
TTTGGTGGTGCAGTGGGGATCCCTCGGCAGTGTCAAGTGAGTCGTGTCAA
GCCTCCGGTATAATGCCGGTAAGGGTGCCGGTATGCTTGCCGGGCACATG
CTGGCACGCAGGAGGGACCTGCGCTGCATGGCATCTCGGTGTCCCTGGTG
TTTGTTCGGCCGTTTCGTGCAAGAGCGAGCCGCGTGCGTGCGTGCGGTAC
GAGCAACACGGAACGTGTTGTTGACGTTTTTCGCGGCTGCTGCCGCTACT
GCGCTGCTGATGGTGGGGTGATTTGGTGCGGGTTGGATGGCCACATCCTT
CGTCACAAGACACCCGCTTTTCGAGGCGGACATCGAAACACACACATCCC
TTGTAACACACATACAACCCCCCCCCCCCCCCCCCCCCCCCCGGAAGGGG
GTTAGCTACCAAACAAAAAAAACACGCCGCCCACCAACAAAACGGGNNNN
NNNNNNAACCCTATCACCTATATGACTACCTCTTGCTTGACTGCAGCGGA
CAACACACCCCCCCCCCCCACCACCCACCCCCCCCCCCCCCCCCCCCCCC
CCCCCACGGAATGGTGGTTATGTACCAAACAAAACAAATATCGTGATCAT
CATCAAACAGGTCGGTACCGCGGAGGCGGTGGCGGTAGCGGTTACAGCGG
CCCAAGTTCCGCCCTCCGTCGAGGCGACCATGGTCGGCGGTGGCGGAGGC
ATCTCGTCCGAGCAGCAGCAGCAGCAGCAGCAGCCTGTCGGCGTCGAAGC
GGGAGCGGTACGGGTCAGCATTTCTCAGCTCCTCGACGCCAAGCGCGCGC
AGCTTCAGAGCATCTTGGACGCGCCGCACATCCAAGCCTAA back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig8815:2680..5670- >mRNA_Ecto-sp9_F_contig8815.17000.1 ID=mRNA_Ecto-sp9_F_contig8815.17000.1|Name=mRNA_Ecto-sp9_F_contig8815.17000.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2652bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8815:2680..5670- (Ectocarpus species9 EcSCA_722f female) AGGGCTCCGCTGAGCTCGACGCGATCGCTCCGACAGATGTGGAGGGACCG GGACAGCGGCGAGAGCACGCCGCGGGCAAGCACCGCGCGCGCGGGCTCCC TGCCGAGCAGCGCGGGAGGCGGAGCCGGCCAAGGAGGAGCGGCGGCGGCG GCGGCGGCAGCGGGGGCCGCCGCGGCGGCGGCGGCGGCGGCGGGCGGCTG CTTCGACGGCGGGGGGGGCTCGACGATCTACTCCTCCCGCGGGGGGTCGA TCTCTCGGAAGGGGTCGATGTCCCTCGATGGGTTTTCCACGGCCTCCATG GGGGCCGGCGGAGAGGGCGGTGGTCCTCTGTCGGGACGAGGGGGCGCCAT GAGACATTCGTCGAGGGGCTTCTCGGAAGGGGATGGGAGGGGGGATGGGG GCGGGGGCGTGGGTGGGGGCGGGCGCAGTCCCCGGTGGACGGTGGGCGCC GCGGTGGCCGGGAGGCTGGAGGGGATGAGGGCGCGCGAGCTGGGCGCGAG CCTCCGGGCGAAGGTGCAGGAGAACGAGGCCATGAAGCGATACGTCGAGT CCGTGACGAGGGCTCCGCTGAGCTCGACGCGATCGCTCCGACAGATGTGG AGGGACCGGGACAGCGGCGAGAGCACGCCGCGGGCAAGCACCGCGCGCGC GGGCTCCCTGCCGAGCAGCGCGGGAGGCGGAGCCGGCCAAGGAGGAGCGG CGGCGGCGGCGGCGGCAGCGGGGGCCGCCGCGGCGGCGGCGGCGGCGGCG GGCGGCTGCTTCGACGGCGGGGGGGGCTCGACGATCTACTCCTCCCGCGG GGGGTCGATCTCTCGGAAGGGGTCGATGTCCCTCGATGGGTTTTCCACGG CCTCCATGGGGGCCGGCGGAGAGGGCGGTGGTCCTCTGTCGGGACGAGGG GGCGCCATGAGACATTCGTCGAGGGGCTTCTCGGAAGGGGATGGGAGGGG GGATGGGGGCGGGGGCGTGGGTGGGGGCGGGCGCAGTCCCCGGTGGACGG TGGGCGCCGCGGTGGCCGGGAGGCTGGAGGGGATGAGGGCGCGCGAGCTG GGCGCGAGCCTCCGGGCGAAGGTGCAGGAGAACGAGGCCATGAAGCGATA CGTCGAGTCCGTGACGGAGGAGATGCGCGCGCTCCAGCAGAAGATCTCGC AGCAGTCGTCGCCGGCCTCTCCCCCGCCGCGGCGGCCGATGCTGTCCTCC TACGCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCGGCACGGCGGCACC CTTGGTGACAAGCGGGCCCGGGGAGGAGCAGCTCTCCATCGCCGAGATGG TGGCCCGCGGCATCGGAGCGGCACGGCAAGACCCCGCCGCCCACCCCGGC GCCGGCGCCGGCGAAAGACTCTTTGATGGCCGCAGGAACCCCAACCCCTC GCTGCGGGGGGCGACGGCGCTTGGCGCGGACGGGGGTGTGGGGACGGAGG CGGGTGCGGCGGTGCCCCGGGCACGGGTGGTTCAGGTAGAGGGGGGCTCG GCGGTAGCGGAGGCGCCCGCTACGACGATGCAGCGGGCGAATGGTGACGC CGGAGCGGTGGCGGCCGCGGGGCTAAAGGGGGGCGAGTTTTCGTCGGTCA CAGCAGCAGCAGGAGCACCTGCTGCTCCTGGGCATGGGGGTGCGCAGAGA GAGGAGGAGATGCGCGCGCTCCAGCAGAAGATCTCGCAGCAGTCGTCGCC GGCCTCTCCCCCGCCGCGGCGGCCGATGCTGTCCTCCTACGCGGGAGGAG GAGGAGGAGGAGGAGGAGGAGCCGGCACGGCGGCACCCTTGGTGACAAGC GGGCCCGGGGAGGAGCAGCTCTCCATCGCCGAGATGGTGGCCCGCGGCAT CGGAGCGGCACGGCAAGACCCCGCCGCCCACCCCGGCGCCGGCGCCGGCG AAAGACTCTTTGATGGCCGCAGGAACCCCAACCCCTCGCTGCGGGGGGCG ACGGCGCTTGGCGCGGACGGGGGTGTGGGGACGGAGGCGGGTGCGGCGGT GCCCCGGGCACGGGTGGTTCAGGTAGAGGGGGGCTCGGCGGTAGCGGAGG CGCCCGCTACGACGATGCAGCGGGCGAATGGTGACGCCGGAGCGGTGGCG GCCGCGGGGCTAAAGGGGGGCGAGTTTTCGTCGGTCACAGCAGCAGCAGG AGCACCTGCTGCTCCTGGGCATGGGGGTGCGCAGAGAGAGGTCGGTACCG CGGAGGCGGTGGCGGTAGCGGTTACAGCGGCCCAAGTTCCGCCCTCCGTC GAGGCGACCATGGTCGGCGGTGGCGGAGGCATCTCGTCCGAGCAGCAGCA GCAGCAGCAGCAGCCTGTCGGCGTCGAAGCGGGAGCGGTACGGGTCAGCA TTTCTCAGCTCCTCGACGCCAAGCGCGCGCAGCTTCAGAGCATCTTGGAC GCGCCGCACATCCAAGCCTAAGTCGGTACCGCGGAGGCGGTGGCGGTAGC GGTTACAGCGGCCCAAGTTCCGCCCTCCGTCGAGGCGACCATGGTCGGCG GTGGCGGAGGCATCTCGTCCGAGCAGCAGCAGCAGCAGCAGCAGCCTGTC GGCGTCGAAGCGGGAGCGGTACGGGTCAGCATTTCTCAGCTCCTCGACGC CAAGCGCGCGCAGCTTCAGAGCATCTTGGACGCGCCGCACATCCAAGCCT AA back to top
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