mRNA_Ecto-sp9_F_contig8813.16999.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8813.16999.1
Unique NamemRNA_Ecto-sp9_F_contig8813.16999.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8813.16999.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8813contigEcto-sp9_F_contig8813:4612..5101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size490
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.185712-UTR-Ecto-sp9_F_contig8813:4611..47501622930933.185712-UTR-Ecto-sp9_F_contig8813:4611..4750Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8813 4612..4750 +
1692278955.3707185-UTR-Ecto-sp9_F_contig8813:4611..47501692278955.3707185-UTR-Ecto-sp9_F_contig8813:4611..4750Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8813 4612..4750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.2045693-CDS-Ecto-sp9_F_contig8813:4750..51011622930933.2045693-CDS-Ecto-sp9_F_contig8813:4750..5101Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8813 4751..5101 +
1692278955.3849516-CDS-Ecto-sp9_F_contig8813:4750..51011692278955.3849516-CDS-Ecto-sp9_F_contig8813:4750..5101Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8813 4751..5101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8813.16999.1prot_Ecto-sp9_F_contig8813.16999.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8813 4751..5101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8813.16999.1

>prot_Ecto-sp9_F_contig8813.16999.1 ID=prot_Ecto-sp9_F_contig8813.16999.1|Name=mRNA_Ecto-sp9_F_contig8813.16999.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=117bp
MYAFRCRCYRRYKYPNLSRFLPDKFISPPAAYRYSHVPAPSPSCATMIID
HVGRARRDNKKRDRAPIERLREDYLPWLHIHSKTNGVDEGFVYEFAVVIA
WPKPKPVSKPKRVFASL
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mRNA from alignment at Ecto-sp9_F_contig8813:4612..5101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8813.16999.1 ID=mRNA_Ecto-sp9_F_contig8813.16999.1|Name=mRNA_Ecto-sp9_F_contig8813.16999.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=490bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8813:4612..5101+ (Ectocarpus species9 EcSCA_722f female)
GTCGGGAAAGGTCCCCTCTGTCGTTCGGGGGTTCAAGCATGGGGCATGAA
TTCGGGAAAGGGCTCCACATCTCGTTTCCTGTGGATCCACAACAGCTTAC
AAAGAAAGGTTGCCCTCGCCGAAATTCGAACGAAGACCCATGTACGCGTT
TCGATGTAGGTGTTATCGCCGGTACAAATACCCGAATCTATCGCGATTCC
TTCCCGATAAGTTTATTTCTCCCCCTGCCGCTTATCGTTACTCACACGTG
CCTGCTCCCTCTCCATCCTGTGCAACAATGATCATTGATCATGTTGGACG
GGCTCGACGTGACAACAAGAAAAGAGATCGAGCACCTATTGAGAGATTGA
GAGAGGACTACCTCCCATGGCTACACATACACTCCAAGACGAACGGTGTG
GATGAAGGCTTCGTGTATGAGTTCGCCGTCGTCATCGCTTGGCCTAAACC
TAAACCCGTTTCAAAGCCGAAGCGTGTGTTTGCATCTTTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8813:4612..5101+

>mRNA_Ecto-sp9_F_contig8813.16999.1 ID=mRNA_Ecto-sp9_F_contig8813.16999.1|Name=mRNA_Ecto-sp9_F_contig8813.16999.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8813:4612..5101+ (Ectocarpus species9 EcSCA_722f female)
ATGTACGCGTTTCGATGTAGGTGTTATCGCCGGTACAAATACCCGAATCT
ATCGCGATTCCTTCCCGATAAGTTTATTTCTCCCCCTGCCGCTTATCGTT
ACTCACACGTGCCTGCTCCCTCTCCATCCTGTGCAACAATGATCATTGAT
CATGTTGGACGGGCTCGACGTGACAACAAGAAAAGAGATCGAGCACCTAT
TGAGAGATTGAGAGAGGACTACCTCCCATGGCTACACATACACTCCAAGA
CGAACGGTGTGGATGAAGGCTTCGTGTATGAGTTCGCCGTCGTCATCGCT
TGGCCTAAACCTAAACCCGTTTCAAAGCCGAAGCGTGTGTTTGCATCTTT
GATGTACGCGTTTCGATGTAGGTGTTATCGCCGGTACAAATACCCGAATC
TATCGCGATTCCTTCCCGATAAGTTTATTTCTCCCCCTGCCGCTTATCGT
TACTCACACGTGCCTGCTCCCTCTCCATCCTGTGCAACAATGATCATTGA
TCATGTTGGACGGGCTCGACGTGACAACAAGAAAAGAGATCGAGCACCTA
TTGAGAGATTGAGAGAGGACTACCTCCCATGGCTACACATACACTCCAAG
ACGAACGGTGTGGATGAAGGCTTCGTGTATGAGTTCGCCGTCGTCATCGC
TTGGCCTAAACCTAAACCCGTTTCAAAGCCGAAGCGTGTGTTTGCATCTT
TG
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