mRNA_Ecto-sp9_F_contig8810.16996.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Similar (to TAK1 (TGF-beta-activated kinase) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3F3_ECTSI) HSP 1 Score: 488 bits (1255), Expect = 4.500e-163 Identity = 254/291 (87.29%), Postives = 259/291 (89.00%), Query Frame = 2
Query: 179 QDMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSGPWRAPEYLTRK------------------------------PMTEKIDIYRMGLVFRKFVAGEGMRMPGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVILQGLPQVP 961
+DMLA+NTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDAVRGNPHIVQTLGICNTTVVTEA+MLDIQSAVRKR TALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSGPWRAPEYLTRK PMTEKIDIYRMGLV RKFVAGEGMR+PGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVS+RLEVILQGLPQVP
Sbjct: 111 EDMLANNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDAVRGNPHIVQTLGICNTTVVTEAYMLDIQSAVRKRMTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSGPWRAPEYLTRKDRMAADSLRRWRSLMEYAGDNQEDAEDNQEPMTEKIDIYRMGLVLRKFVAGEGMRIPGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSKRLEVILQGLPQVP 401
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Possible (flag-tagged or MAPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F1_ECTSI) HSP 1 Score: 377 bits (969), Expect = 2.510e-120 Identity = 195/277 (70.40%), Postives = 219/277 (79.06%), Query Frame = 2
Query: 179 QDMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRN-SGPWRAPEYLTRK------------------PMTEKIDIYRMGLVFRKFVAGEGMRMPGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVILQGLP 952
+ MLA+N R VGEGRVRKVYLAEYG+QTVAVKVLQHQ +IEVATMDAVRGNPHIVQTLGICNTTVVTEA L + SA+RKRTTALPIGEAVTMSLDAVRGLQALHEA+GGPIVHFD+KP Q+LVTG G+VKLNDFNVAWFMSR PDGKPCPFNM + R + PWR+PEY RK PMTEK+DIY MGL+F +AG+GMRMP A+E+K +PVF T WHRSY EI QDMI EA +RPSAR+V+ERL+VIL LP
Sbjct: 121 EAMLANNKRFVGEGRVRKVYLAEYGDQTVAVKVLQHQDQVNRHRIEVATMDAVRGNPHIVQTLGICNTTVVTEAFTLTLSSAMRKRTTALPIGEAVTMSLDAVRGLQALHEAIGGPIVHFDLKPPQILVTGIGQVKLNDFNVAWFMSRGPDGKPCPFNMGIEHRGQTSPWRSPEYHARKADDDEELRQRCDDEDNQEPMTEKVDIYSMGLIFLLIIAGDGMRMPVAQESKDDVPVFATPWHRSYYEIAQDMIVEEANRRPSARQVAERLDVILHELP 397
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW8_9PHAE) HSP 1 Score: 353 bits (906), Expect = 2.450e-113 Identity = 174/227 (76.65%), Postives = 199/227 (87.67%), Query Frame = 2
Query: 185 MLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRN-SGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEGMRMPGAREAKGAIPVFRTTWHRSYSEI 862
MLA++ RLVG+GRVR+VYLAEYG+QTVAVKVLQHQ +IE+ATMD VRGNP+IVQTLGICNTTVVTEA+MLDI+SAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGP+VHFDIKP QLLVTG+GRVKLNDFNVAWFMSR PDGKPCPFNM + R + PWR+PEY +KPMTEK+DIY MG++F +AG+GMRMP A+E+K +PVF T WHRSY E+
Sbjct: 1 MLANDARLVGKGRVRRVYLAEYGDQTVAVKVLQHQDQVNRHRIELATMDVVRGNPNIVQTLGICNTTVVTEAYMLDIRSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPVVHFDIKPPQLLVTGDGRVKLNDFNVAWFMSRGPDGKPCPFNMGIKHRGQTSPWRSPEYHAQKPMTEKVDIYSMGMIFLTVIAGDGMRMPVAQESKHDVPVFATPWHRSYYEV 227
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: N/a (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F2_ECTSI) HSP 1 Score: 312 bits (799), Expect = 8.050e-98 Identity = 159/214 (74.30%), Postives = 180/214 (84.11%), Query Frame = 2
Query: 326 MDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAV-RKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSG-PWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEGMRMPGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVILQGLPQVP 961
MDAVRGNPHIVQ LGICNTTVVTEA L +QSAV RK TTAL I EAV MSLDAVRGLQALHEA GGPIVHFD+KP QL+VT +G +KLNDFNVAWFMS+ PDGKPCPFNM + R G PWR+PEYLTRKPMTEKIDIYRMGLVF++ +A G++MP A+E+K +PV TTWH SY EIVQDMIA+EATQRPSAREV+ RL IL+ LP++P
Sbjct: 1 MDAVRGNPHIVQMLGICNTTVVTEAFTLTLQSAVHRKGTTALSISEAVNMSLDAVRGLQALHEAEGGPIVHFDVKPTQLMVTDSGGLKLNDFNVAWFMSQGPDGKPCPFNMEGKFRGHGSPWRSPEYLTRKPMTEKIDIYRMGLVFQQILAAAGVKMPVAQESKDDVPVVATTWHWSYYEIVQDMIAMEATQRPSAREVAWRLRGILEELPELP 214
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Serine/threonine (protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX1_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.120e-48 Identity = 106/267 (39.70%), Postives = 157/267 (58.80%), Query Frame = 2
Query: 179 QDMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTR-------LQQIEVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSR--RPDGKPCPFNMLAQIRNSGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEGMRMPGAR---EAKGAI--PVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVI 937
+ ML+ L+G GRVR V++ EY + V VK LQH + R + ++E T++A+RG+P++V LG CNTTVVTE H + + ++ L + V+++LD +G+QALHE G +H D+KP QLL+ GR K+NDFN MS DGK CP + + PWRAPE + KP+TEK+DIY MG+++ V+G G+ P EA+ A P +WH+ + EI+QDM + +RP AR+V +RL+ +
Sbjct: 98 ERMLSGEMTLIGTGRVRTVHMVEYEGEAVVVKTLQHVEELRRLKAHLEMHRVESLTLEALRGHPNVVGMLGFCNTTVVTEYHPDNFLHTIFRKKEKLSLRRVVSLALDVAQGMQALHEIAGA--IHLDMKPQQLLIDDAGRGKVNDFNSVHLMSADASADGKHCPI-LTGRPARLVPWRAPENIAGKPVTEKVDIYAMGMIYYSLVSG-GLPFPDVETFDEARAAHERPEIDPSWHKGFVEIIQDMWHEDPDERPFARQVVQRLQAL 360
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Serine/threonine/tyrosine (kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN73_ECTSI) HSP 1 Score: 181 bits (458), Expect = 8.160e-48 Identity = 106/267 (39.70%), Postives = 151/267 (56.55%), Query Frame = 2
Query: 185 MLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQI-------EVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSGP-----WRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEG-MRMPGARE---AKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVI 937
M+ L+ G VR VYL EY Q + VK L++ + R Q++ EV TMDA++G+P+IV+ LG+C TTVVT+ D + ++R+R +PI + V+++L A +GLQALHE VGG +HFD+KP QLL+ +G +NDFN M R P P + P WR PE KP+TEK DIY MG++F +AG P A + + G+ P +WHR + E+V+ M + +RPSAR+V RL I
Sbjct: 1 MIRREQTLLASGLVRDVYLVEYEGQALVVKTLRNVDELRKQKLYLTMHKREVLTMDALKGHPNIVEMLGVCGTTVVTKFFKEDFKGSIRRRGAPMPIRQVVSLALGAAKGLQALHEIVGG--IHFDMKPQQLLIDDDGTAVINDFNALKLMGRSPG----PDEAFCAVHGGTPAQLITWRPPENYAGKPLTEKADIYSMGMIFYSVIAGRNPYDTPEALQTAVSHGSKPEVDPSWHRGFMEVVEQMWLDDPERRPSARQVVTRLTAI 261
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH0_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.210e-46 Identity = 110/267 (41.20%), Postives = 156/267 (58.43%), Query Frame = 2
Query: 182 DMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQI-------EVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRP--DGKPCPFN--MLAQIRNSGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEG-MRMPGARE---AKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVI 937
+M+ L+ G VR VYL EY Q + VK L++ + R Q++ EV TMDA++G+P+IV LG+C TTVVT+ D + ++R+R +PI + V+++L A +GLQALHE VGG +HFD+KP QLL+ +G +NDFN M R P D + C + AQ+ PWR PE KP+TEK DIY MG++F +AG P A + + G+ P +WHR Y E+V+ M + +RPSAR+V RL I
Sbjct: 114 NMIRREHALLASGLVRDVYLVEYEGQALVVKTLRNVDELRKQKLYLTMHKREVLTMDALKGHPNIVDMLGVCGTTVVTKFFKEDFKGSIRRRGAPMPIRQVVSLALGAAKGLQALHEIVGG--IHFDMKPQQLLIDDDGTAVVNDFNALKLMGRSPGPDEEFCAVHGGTPAQLI---PWRPPENYAGKPLTEKADIYSMGMIFYSLIAGRNPYDTPEALKTAVSHGSKPEVDPSWHRGYMEVVERMWLDDPERRPSARQVVVRLTAI 375
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Similar (to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W7_ECTSI) HSP 1 Score: 176 bits (447), Expect = 5.010e-46 Identity = 108/270 (40.00%), Postives = 155/270 (57.41%), Query Frame = 2
Query: 173 VTQDMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQI-------EVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMS--RRPDGKPCPFNMLAQIRNSGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVA------GEGMRMPGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVI 937
+ Q+MLA NT LVG GRVR VYL EY + VA+K L++ D+R Q++ E+ T+DA+RG+ +IV LG+C+T VVTE + A+ + LP V+M+LDA RGLQALHE G +H D+KP QLL+ +GRV LNDFN A MS + DG CP + + PW +PE +P+T DIY + ++F +A G + A +G P +WH+ + ++VQDM +RPSA+ V RL+++
Sbjct: 19 IAQNMLAGNTTLVGNGRVRDVYLVEYEGRKVALKTLRNMDDSRSQRVHLEKHKREILTLDAMRGHRNIVGMLGLCDTMVVTEYYTTSFLRAIFRGRMELPDLAVVSMALDAARGLQALHETAGS--IHVDLKPQQLLIDDDGRVMLNDFNSAHIMSISQAGDGTACPAQSTKRNLPT-PWPSPENYAGEPLTPASDIYSLAMIFFSLMAASLPYEGNPELLARAMSRQGR-PEIDPSWHKGFMKVVQDMWHQTPQKRPSAKRVVVRLQLL 284
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7B7_9PHAE) HSP 1 Score: 179 bits (454), Expect = 8.690e-45 Identity = 106/266 (39.85%), Postives = 153/266 (57.52%), Query Frame = 2
Query: 179 QDMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVL-----QHQSDTRLQQI---EVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKR-TTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEG--MRMPGARE--AKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVI 937
++M+ L+G G +R VYL E G + + VK L Q + TR+++I E A +DAVRG+P++V LGIC + V+E + + V K +PI V+M+LDA RGLQALHEA GG I+HFD+KP QL+V GR+K+ND N+ F DG CP+ A GPWR+PE + + + EK+DIY + +VF +A + +P A +G P +WH + +IV+DM + RPSAR V +RLE +
Sbjct: 244 EEMMEGKKTLIGNGNIRDVYLVERGGRNLVVKYLREDFEQRATRTRVERIHRWEAAAIDAVRGHPNVVDMLGICGPSSVSEYFPVRLDDLVLKAGAQPIPILTVVSMALDAARGLQALHEAPGGTIIHFDMKPQQLMVDDQGRLKINDLNMCSFPDTDADGNTCPYESSAS--RVGPWRSPENIAGEKLNEKLDIYSLAMVFYSMLALHPPYLNVPNATGNIMEGIPPPTDPSWHPGFLDIVRDMWQRDPNARPSARRVVQRLEFL 507
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Serine/threonine (protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN76_ECTSI) HSP 1 Score: 169 bits (427), Expect = 7.960e-44 Identity = 104/245 (42.45%), Postives = 140/245 (57.14%), Query Frame = 2
Query: 239 LAEYGEQTVAVKVLQHQSDTRLQQI-------EVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMS-RRPDGKPCPFNMLAQIRNSGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEGMRMPG------AREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLE 931
+ Y + V VK LQH + R ++ EV T+DA+RG PHIV LG C TTVVTE H + S + +G V+++LD +GLQALHE G +H D+KP QLL+ G GR K+NDFN A MS R G+ CP N R PWRAPE + KP++EK+DIY MG+++ ++G G+ P A EAK P +WH+ ++ I QDM + +RPSAR+V RLE
Sbjct: 1 MVNYQGENVVVKTLQHVEELRREKAHLSMHRREVLTLDALRGQPHIVGMLGFCQTTVVTEYHSDNFLSTIFGLPHGRSLGRVVSLALDVAQGLQALHETAGA--IHLDMKPQQLLIDGTGRGKVNDFNSAHLMSVDRVTGEYCPANAAKPARIV-PWRAPENVAGKPLSEKVDIYAMGMIYFSLISG-GVPFPDQEAFERAYEAK-LRPEIDPSWHKGFTRIFQDMWHQDPERRPSARQVVLRLE 240 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8810.16996.1 >prot_Ecto-sp9_F_contig8810.16996.1 ID=prot_Ecto-sp9_F_contig8810.16996.1|Name=mRNA_Ecto-sp9_F_contig8810.16996.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=260bp MLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDAback to top mRNA from alignment at Ecto-sp9_F_contig8810:540..5502+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8810.16996.1 ID=mRNA_Ecto-sp9_F_contig8810.16996.1|Name=mRNA_Ecto-sp9_F_contig8810.16996.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4963bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8810:540..5502+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8810:540..5502+ >mRNA_Ecto-sp9_F_contig8810.16996.1 ID=mRNA_Ecto-sp9_F_contig8810.16996.1|Name=mRNA_Ecto-sp9_F_contig8810.16996.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1560bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8810:540..5502+ (Ectocarpus species9 EcSCA_722f female)back to top |