mRNA_Ecto-sp9_F_contig8810.16996.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8810.16996.1
Unique NamemRNA_Ecto-sp9_F_contig8810.16996.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Similar (to TAK1 (TGF-beta-activated kinase) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3F3_ECTSI)

HSP 1 Score: 488 bits (1255), Expect = 4.500e-163
Identity = 254/291 (87.29%), Postives = 259/291 (89.00%), Query Frame = 2
Query:  179 QDMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSGPWRAPEYLTRK------------------------------PMTEKIDIYRMGLVFRKFVAGEGMRMPGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVILQGLPQVP 961
            +DMLA+NTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDAVRGNPHIVQTLGICNTTVVTEA+MLDIQSAVRKR TALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSGPWRAPEYLTRK                              PMTEKIDIYRMGLV RKFVAGEGMR+PGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVS+RLEVILQGLPQVP
Sbjct:  111 EDMLANNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDAVRGNPHIVQTLGICNTTVVTEAYMLDIQSAVRKRMTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSGPWRAPEYLTRKDRMAADSLRRWRSLMEYAGDNQEDAEDNQEPMTEKIDIYRMGLVLRKFVAGEGMRIPGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSKRLEVILQGLPQVP 401          
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Possible (flag-tagged or MAPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F1_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 2.510e-120
Identity = 195/277 (70.40%), Postives = 219/277 (79.06%), Query Frame = 2
Query:  179 QDMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRN-SGPWRAPEYLTRK------------------PMTEKIDIYRMGLVFRKFVAGEGMRMPGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVILQGLP 952
            + MLA+N R VGEGRVRKVYLAEYG+QTVAVKVLQHQ      +IEVATMDAVRGNPHIVQTLGICNTTVVTEA  L + SA+RKRTTALPIGEAVTMSLDAVRGLQALHEA+GGPIVHFD+KP Q+LVTG G+VKLNDFNVAWFMSR PDGKPCPFNM  + R  + PWR+PEY  RK                  PMTEK+DIY MGL+F   +AG+GMRMP A+E+K  +PVF T WHRSY EI QDMI  EA +RPSAR+V+ERL+VIL  LP
Sbjct:  121 EAMLANNKRFVGEGRVRKVYLAEYGDQTVAVKVLQHQDQVNRHRIEVATMDAVRGNPHIVQTLGICNTTVVTEAFTLTLSSAMRKRTTALPIGEAVTMSLDAVRGLQALHEAIGGPIVHFDLKPPQILVTGIGQVKLNDFNVAWFMSRGPDGKPCPFNMGIEHRGQTSPWRSPEYHARKADDDEELRQRCDDEDNQEPMTEKVDIYSMGLIFLLIIAGDGMRMPVAQESKDDVPVFATPWHRSYYEIAQDMIVEEANRRPSARQVAERLDVILHELP 397          
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW8_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 2.450e-113
Identity = 174/227 (76.65%), Postives = 199/227 (87.67%), Query Frame = 2
Query:  185 MLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRN-SGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEGMRMPGAREAKGAIPVFRTTWHRSYSEI 862
            MLA++ RLVG+GRVR+VYLAEYG+QTVAVKVLQHQ      +IE+ATMD VRGNP+IVQTLGICNTTVVTEA+MLDI+SAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGP+VHFDIKP QLLVTG+GRVKLNDFNVAWFMSR PDGKPCPFNM  + R  + PWR+PEY  +KPMTEK+DIY MG++F   +AG+GMRMP A+E+K  +PVF T WHRSY E+
Sbjct:    1 MLANDARLVGKGRVRRVYLAEYGDQTVAVKVLQHQDQVNRHRIELATMDVVRGNPNIVQTLGICNTTVVTEAYMLDIRSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPVVHFDIKPPQLLVTGDGRVKLNDFNVAWFMSRGPDGKPCPFNMGIKHRGQTSPWRSPEYHAQKPMTEKVDIYSMGMIFLTVIAGDGMRMPVAQESKHDVPVFATPWHRSYYEV 227          
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: N/a (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F2_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 8.050e-98
Identity = 159/214 (74.30%), Postives = 180/214 (84.11%), Query Frame = 2
Query:  326 MDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAV-RKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSG-PWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEGMRMPGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVILQGLPQVP 961
            MDAVRGNPHIVQ LGICNTTVVTEA  L +QSAV RK TTAL I EAV MSLDAVRGLQALHEA GGPIVHFD+KP QL+VT +G +KLNDFNVAWFMS+ PDGKPCPFNM  + R  G PWR+PEYLTRKPMTEKIDIYRMGLVF++ +A  G++MP A+E+K  +PV  TTWH SY EIVQDMIA+EATQRPSAREV+ RL  IL+ LP++P
Sbjct:    1 MDAVRGNPHIVQMLGICNTTVVTEAFTLTLQSAVHRKGTTALSISEAVNMSLDAVRGLQALHEAEGGPIVHFDVKPTQLMVTDSGGLKLNDFNVAWFMSQGPDGKPCPFNMEGKFRGHGSPWRSPEYLTRKPMTEKIDIYRMGLVFQQILAAAGVKMPVAQESKDDVPVVATTWHWSYYEIVQDMIAMEATQRPSAREVAWRLRGILEELPELP 214          
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Serine/threonine (protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX1_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.120e-48
Identity = 106/267 (39.70%), Postives = 157/267 (58.80%), Query Frame = 2
Query:  179 QDMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTR-------LQQIEVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSR--RPDGKPCPFNMLAQIRNSGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEGMRMPGAR---EAKGAI--PVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVI 937
            + ML+    L+G GRVR V++ EY  + V VK LQH  + R       + ++E  T++A+RG+P++V  LG CNTTVVTE H  +    + ++   L +   V+++LD  +G+QALHE  G   +H D+KP QLL+   GR K+NDFN    MS     DGK CP  +  +     PWRAPE +  KP+TEK+DIY MG+++   V+G G+  P      EA+ A   P    +WH+ + EI+QDM   +  +RP AR+V +RL+ +
Sbjct:   98 ERMLSGEMTLIGTGRVRTVHMVEYEGEAVVVKTLQHVEELRRLKAHLEMHRVESLTLEALRGHPNVVGMLGFCNTTVVTEYHPDNFLHTIFRKKEKLSLRRVVSLALDVAQGMQALHEIAGA--IHLDMKPQQLLIDDAGRGKVNDFNSVHLMSADASADGKHCPI-LTGRPARLVPWRAPENIAGKPVTEKVDIYAMGMIYYSLVSG-GLPFPDVETFDEARAAHERPEIDPSWHKGFVEIIQDMWHEDPDERPFARQVVQRLQAL 360          
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Serine/threonine/tyrosine (kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN73_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 8.160e-48
Identity = 106/267 (39.70%), Postives = 151/267 (56.55%), Query Frame = 2
Query:  185 MLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQI-------EVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSGP-----WRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEG-MRMPGARE---AKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVI 937
            M+     L+  G VR VYL EY  Q + VK L++  + R Q++       EV TMDA++G+P+IV+ LG+C TTVVT+    D + ++R+R   +PI + V+++L A +GLQALHE VGG  +HFD+KP QLL+  +G   +NDFN    M R P     P      +    P     WR PE    KP+TEK DIY MG++F   +AG      P A +   + G+ P    +WHR + E+V+ M   +  +RPSAR+V  RL  I
Sbjct:    1 MIRREQTLLASGLVRDVYLVEYEGQALVVKTLRNVDELRKQKLYLTMHKREVLTMDALKGHPNIVEMLGVCGTTVVTKFFKEDFKGSIRRRGAPMPIRQVVSLALGAAKGLQALHEIVGG--IHFDMKPQQLLIDDDGTAVINDFNALKLMGRSPG----PDEAFCAVHGGTPAQLITWRPPENYAGKPLTEKADIYSMGMIFYSVIAGRNPYDTPEALQTAVSHGSKPEVDPSWHRGFMEVVEQMWLDDPERRPSARQVVTRLTAI 261          
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH0_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.210e-46
Identity = 110/267 (41.20%), Postives = 156/267 (58.43%), Query Frame = 2
Query:  182 DMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQI-------EVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRP--DGKPCPFN--MLAQIRNSGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEG-MRMPGARE---AKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVI 937
            +M+     L+  G VR VYL EY  Q + VK L++  + R Q++       EV TMDA++G+P+IV  LG+C TTVVT+    D + ++R+R   +PI + V+++L A +GLQALHE VGG  +HFD+KP QLL+  +G   +NDFN    M R P  D + C  +    AQ+    PWR PE    KP+TEK DIY MG++F   +AG      P A +   + G+ P    +WHR Y E+V+ M   +  +RPSAR+V  RL  I
Sbjct:  114 NMIRREHALLASGLVRDVYLVEYEGQALVVKTLRNVDELRKQKLYLTMHKREVLTMDALKGHPNIVDMLGVCGTTVVTKFFKEDFKGSIRRRGAPMPIRQVVSLALGAAKGLQALHEIVGG--IHFDMKPQQLLIDDDGTAVVNDFNALKLMGRSPGPDEEFCAVHGGTPAQLI---PWRPPENYAGKPLTEKADIYSMGMIFYSLIAGRNPYDTPEALKTAVSHGSKPEVDPSWHRGYMEVVERMWLDDPERRPSARQVVVRLTAI 375          
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Similar (to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W7_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 5.010e-46
Identity = 108/270 (40.00%), Postives = 155/270 (57.41%), Query Frame = 2
Query:  173 VTQDMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQI-------EVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMS--RRPDGKPCPFNMLAQIRNSGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVA------GEGMRMPGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVI 937
            + Q+MLA NT LVG GRVR VYL EY  + VA+K L++  D+R Q++       E+ T+DA+RG+ +IV  LG+C+T VVTE +      A+ +    LP    V+M+LDA RGLQALHE  G   +H D+KP QLL+  +GRV LNDFN A  MS  +  DG  CP     +   + PW +PE    +P+T   DIY + ++F   +A      G    +  A   +G  P    +WH+ + ++VQDM      +RPSA+ V  RL+++
Sbjct:   19 IAQNMLAGNTTLVGNGRVRDVYLVEYEGRKVALKTLRNMDDSRSQRVHLEKHKREILTLDAMRGHRNIVGMLGLCDTMVVTEYYTTSFLRAIFRGRMELPDLAVVSMALDAARGLQALHETAGS--IHVDLKPQQLLIDDDGRVMLNDFNSAHIMSISQAGDGTACPAQSTKRNLPT-PWPSPENYAGEPLTPASDIYSLAMIFFSLMAASLPYEGNPELLARAMSRQGR-PEIDPSWHKGFMKVVQDMWHQTPQKRPSAKRVVVRLQLL 284          
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7B7_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 8.690e-45
Identity = 106/266 (39.85%), Postives = 153/266 (57.52%), Query Frame = 2
Query:  179 QDMLASNTRLVGEGRVRKVYLAEYGEQTVAVKVL-----QHQSDTRLQQI---EVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKR-TTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDGKPCPFNMLAQIRNSGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEG--MRMPGARE--AKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEVI 937
            ++M+     L+G G +R VYL E G + + VK L     Q  + TR+++I   E A +DAVRG+P++V  LGIC  + V+E   + +   V K     +PI   V+M+LDA RGLQALHEA GG I+HFD+KP QL+V   GR+K+ND N+  F     DG  CP+   A     GPWR+PE +  + + EK+DIY + +VF   +A     + +P A     +G  P    +WH  + +IV+DM   +   RPSAR V +RLE +
Sbjct:  244 EEMMEGKKTLIGNGNIRDVYLVERGGRNLVVKYLREDFEQRATRTRVERIHRWEAAAIDAVRGHPNVVDMLGICGPSSVSEYFPVRLDDLVLKAGAQPIPILTVVSMALDAARGLQALHEAPGGTIIHFDMKPQQLMVDDQGRLKINDLNMCSFPDTDADGNTCPYESSAS--RVGPWRSPENIAGEKLNEKLDIYSLAMVFYSMLALHPPYLNVPNATGNIMEGIPPPTDPSWHPGFLDIVRDMWQRDPNARPSARRVVQRLEFL 507          
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Match: Serine/threonine (protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN76_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 7.960e-44
Identity = 104/245 (42.45%), Postives = 140/245 (57.14%), Query Frame = 2
Query:  239 LAEYGEQTVAVKVLQHQSDTRLQQI-------EVATMDAVRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDAVRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMS-RRPDGKPCPFNMLAQIRNSGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEGMRMPG------AREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLE 931
            +  Y  + V VK LQH  + R ++        EV T+DA+RG PHIV  LG C TTVVTE H  +  S +        +G  V+++LD  +GLQALHE  G   +H D+KP QLL+ G GR K+NDFN A  MS  R  G+ CP N     R   PWRAPE +  KP++EK+DIY MG+++   ++G G+  P       A EAK   P    +WH+ ++ I QDM   +  +RPSAR+V  RLE
Sbjct:    1 MVNYQGENVVVKTLQHVEELRREKAHLSMHRREVLTLDALRGQPHIVGMLGFCQTTVVTEYHSDNFLSTIFGLPHGRSLGRVVSLALDVAQGLQALHETAGA--IHLDMKPQQLLIDGTGRGKVNDFNSAHLMSVDRVTGEYCPANAAKPARIV-PWRAPENVAGKPLSEKVDIYAMGMIYFSLISG-GVPFPDQEAFERAYEAK-LRPEIDPSWHKGFTRIFQDMWHQDPERRPSARQVVLRLE 240          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8810.16996.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Similar4.500e-16387.29to TAK1 (TGF-beta-activated kinase) n=2 Tax=Ectoca... [more]
Possible2.510e-12070.40flag-tagged or MAPK n=1 Tax=Ectocarpus siliculosus... [more]
Protein2.450e-11376.65kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
N/a8.050e-9874.30n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Serine/threonine1.120e-4839.70protein kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Serine/threonine/tyrosine8.160e-4839.70kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
Protein1.210e-4641.20kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Similar5.010e-4640.00to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectoca... [more]
Protein8.690e-4539.85kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Serine/threonine7.960e-4442.45protein kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8810contigEcto-sp9_F_contig8810:540..5502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue3.4e-45
Seed eggNOG ortholog2880.D7FNX1
KEGG koko:K04427
KEGG Pathwayko04010,ko04013,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG ModuleM00686,M00688,M00689
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.25
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsimilar to TAK1 (TGF-beta-activated kinase)
Ec32 orthologEc-19_004340.2
Exons4
Model size2436
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8810.16996.1prot_Ecto-sp9_F_contig8810.16996.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8810 724..4030 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.9785576-UTR-Ecto-sp9_F_contig8810:539..7231622930932.9785576-UTR-Ecto-sp9_F_contig8810:539..723Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8810 540..723 +
1692278955.2829635-UTR-Ecto-sp9_F_contig8810:539..7231692278955.2829635-UTR-Ecto-sp9_F_contig8810:539..723Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8810 540..723 +
1622930933.0735004-UTR-Ecto-sp9_F_contig8810:4030..55021622930933.0735004-UTR-Ecto-sp9_F_contig8810:4030..5502Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8810 4031..5502 +
1692278955.343863-UTR-Ecto-sp9_F_contig8810:4030..55021692278955.343863-UTR-Ecto-sp9_F_contig8810:4030..5502Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8810 4031..5502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.9972768-CDS-Ecto-sp9_F_contig8810:723..8731622930932.9972768-CDS-Ecto-sp9_F_contig8810:723..873Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8810 724..873 +
1692278955.2931573-CDS-Ecto-sp9_F_contig8810:723..8731692278955.2931573-CDS-Ecto-sp9_F_contig8810:723..873Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8810 724..873 +
1622930933.0122752-CDS-Ecto-sp9_F_contig8810:2007..23851622930933.0122752-CDS-Ecto-sp9_F_contig8810:2007..2385Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8810 2008..2385 +
1692278955.3030887-CDS-Ecto-sp9_F_contig8810:2007..23851692278955.3030887-CDS-Ecto-sp9_F_contig8810:2007..2385Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8810 2008..2385 +
1622930933.0284169-CDS-Ecto-sp9_F_contig8810:3263..34101622930933.0284169-CDS-Ecto-sp9_F_contig8810:3263..3410Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8810 3264..3410 +
1692278955.3171012-CDS-Ecto-sp9_F_contig8810:3263..34101692278955.3171012-CDS-Ecto-sp9_F_contig8810:3263..3410Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8810 3264..3410 +
1622930933.0512493-CDS-Ecto-sp9_F_contig8810:3925..40301622930933.0512493-CDS-Ecto-sp9_F_contig8810:3925..4030Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8810 3926..4030 +
1692278955.3263566-CDS-Ecto-sp9_F_contig8810:3925..40301692278955.3263566-CDS-Ecto-sp9_F_contig8810:3925..4030Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8810 3926..4030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8810.16996.1

>prot_Ecto-sp9_F_contig8810.16996.1 ID=prot_Ecto-sp9_F_contig8810.16996.1|Name=mRNA_Ecto-sp9_F_contig8810.16996.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=260bp
MLASNTRLVGEGRVRKVYLAEYGEQTVAVKVLQHQSDTRLQQIEVATMDA
VRGNPHIVQTLGICNTTVVTEAHMLDIQSAVRKRTTALPIGEAVTMSLDA
VRGLQALHEAVGGPIVHFDIKPAQLLVTGNGRVKLNDFNVAWFMSRRPDG
KPCPFNMLAQIRNSGPWRAPEYLTRKPMTEKIDIYRMGLVFRKFVAGEGM
RMPGAREAKGAIPVFRTTWHRSYSEIVQDMIAVEATQRPSAREVSERLEV
ILQGLPQVP*
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mRNA from alignment at Ecto-sp9_F_contig8810:540..5502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8810.16996.1 ID=mRNA_Ecto-sp9_F_contig8810.16996.1|Name=mRNA_Ecto-sp9_F_contig8810.16996.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4963bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8810:540..5502+ (Ectocarpus species9 EcSCA_722f female)
CGGTGGACTGAGCATCGTACCCGACCGCGAAACACAACAACCGGTGCAGC CGGAGACGAGAACACGCCGTCCTTGACAGCACCGCAAAGACGGGCGTGCC TTGCGACAACGGTCAGCATATGTCGTACCTTGTACGTATTTGTTAGGCTG ACCTCTTTTGTCGGCGGGAAATGTTACACAGGATATGCTGGCAAGCAACA CGAGGCTCGTCGGGGAGGGCCGTGTACGAAAAGTGTACTTGGCAGAGTAC GGGGAACAAACGGTAGCTGTGAAGGTGCTCCAGCACCAATCGGATACTCG TTTGCAGCAGATCGAGGTGGCAACCATGGATGCGGTGAGTTGGTTAAAAA TGTGGGCCTGTGCCTCGCCCGAGACGACACTTGAGCTCGCATTTTTGTCG CCCCTTGGCTCCACCTTTGCATCACTTTTTCATGACGGTTGGCTGTCTAG ATGTTATTGCCTTGGTGTGCCTGTCCTGAAGGTGTACACATTTCCTGTTT GCGTGCTTATTTCTTCAGAAACCGTGTTACCTCGTCCTTTGTTTTTTTCA AGTCCGCACCGGCCAAAACAGCTAAATGCGTGAGCGTGGTTGGCAAGTCG GTGACGACGCCAGAGAGGGCACCCAAGGCATAGTGGGGACGCAAGGACGT ACCGCCTAAAGTAGGGCATACGTTTGTGATGTGCCTTCACGTATCTTGTT TCGTATCGTAAGTTACCCCACGTCTCCGGGTGTGGCGGGGGGTCCAGCTG GCCTACAGTCACCCATTCCTCAGCACATACCCGTCTTTTTGAAATCGAGA TTTTTTCTTGTTTGAATTATGTGTAGTGCAAATGCTATCATTGTCGAAAA AGAGACAACGGTCCTCCAAACAACAGGACCGCCAGTAACAGCTAGAAAAG CAGCCCGAGGAACAGTGAAGTCGTAGCGCGACCCCAGCTAATAGCGAGAA TCAATAAACCAGGAACGTGCGCACCATAGGTACACCGTATCCCTGCACGA CCCCTTTAGCATTCTGCGGTATTGCAGTCTGGATTCTTCCGAGGCGGGAT GTGCAGTGAGCCACCTGATTCATGCTGAGGCATGGTTGGAGGTCTCGCTC ATCACTAACGTATATTCCCAGCTGCATTTCAATATCGAACCGCACGAGTT AAGAGCGCGTGGGTGTTTTCTCTTGCTCGCCGCATCTGCGCTACGGCAGA AGCCCTGTTGACACTGATGACGATGTGATAAAAGGCCACCGCTCTAAACG TTGGTAGGAACACGTCAGATTTTGAATTGTTGGTGAGGCGAGCACACCAC GTGAGAGCGTAAATCGCCATCGTGGGAGTTGTTGATTCCTCACCAAGGCG GATGGTAGCAGTGACATGAAACTTCCGCCCTGCTCTCGGTGTATTTGGCG GATGCCATCAAACGACGTCAACCCACCCGATTCCTGCTCGTCTGTCTCGA CGCTGATCGCGGGAGCAGGTCAGGGGCAATCCACACATCGTTCAAACACT GGGCATTTGCAACACCACGGTGGTAACCGAGGCCCACATGCTGGATATTC AATCCGCTGTGCGCAAGCGCACGACGGCTCTACCGATCGGCGAGGCCGTC ACGATGTCCTTGGACGCCGTGAGAGGCCTGCAAGCCCTCCACGAGGCTGT CGGAGGCCCAATCGTACACTTCGATATCAAACCAGCCCAGCTTCTGGTGA CCGGCAACGGACGAGTGAAGCTAAACGATTTTAACGTTGCCTGGTTCATG AGCCGACGGCCAGACGGGAAGCCGTGTCCGTTCAATATGCTGGCCCAAAT ACGGAATAGCGGCCCCTGGAGAGCTCCCGAGTACCTCACCCGAAAGGTCA GCGATAGGAGACCGCGCGGGTCGAGGTGTTTGTTTTATTTGATTGGTTCA CTGTTGCGGTCGCCGAGGAGGCTGGCTGCAGCAAGACAAAGTTATAGTAG GCGGCAGGCGACAGCGTTGCTGACAGCCTTACCGGAGGATAGAAGTATGT CTGGCGGGGCCACTGCTTTGTTTTACGAATGTTACATGCCTTGTTTGAGC ATGACCTTGTAGGACCGAATGGCGGCAGATTCATTACGCCGATGGCGTTC ATTGATGGAATACGCTGGGGACAACCAGGAGGACGCTGAGGACAACCAGG TGGTACGTCCCCCGCCCCCTCACCCAAGTACGTGCGTCAGCAACGCCCCC GAATGTACCTGCACCATGGCAATGGCGGTATCACAGAAAAGCCTGACGGG CTGCAACTTCCCTCCACAGCGGTCAACACCAATAACGGAACACCTCCGGC GAACCGTGAAAGAGCGGTGGAAATTCATGTCGATGGTATGAGCCGCGGCT GTGCGGAACACATGACGTCGCGATTCTGTCAAGTCGGTTGCCGGGTTGAG ACTTAACCTTCTGACTGGAAGTCTCAAGCTTGCTGAACATGGAATTCACG GAGGAGTTGGTTGGCTTTAGGGGCGTCGGTTCCGATTTCTGAGGCAATCG CAAGTTCATCTCCACGACACGACACCACGGAATGATGAGAACATGTGCAG CCTTCCTCCTGCATGACCCCAACGGGTGCACCTGAATGTTCCAAACAGTT TACATGCTCATGTGCATCATTGCAACACACACCTCAACAACAGTACGTGC GCCTTGTTCCAACGACGTTTTCGCATCCCCATTGTTCTTGCCCCCTTTCA TCGTCGTTTTGGTATCCTTTTTAGCCTATGACGGAGAAAATAGATATCTA CAGGATGGGTCTAGTATTTCGAAAATTTGTAGCTGGGGAAGGCATGCGCA TGCCAGGGGCGCGGGAAGCTAAGGGTGCTATCCCCGTTTTCCGCACAACG TGGCACAGGAGCTACAGTGAGGTGCGTGCGTTTAGTATGATTTCGTCATC CTCGCTAACCTGATCAATGAATATTTCTCACTTTTAATGCGGGACAATCT AACGTGAACATAGGTCAATGGGCGTGTGCCTTGTCTGTGTGTGTGAATCA TATGTTGAAGCTGCTACAGTAGTGCGGGCAGTCGCTGCCTCCGTAAAAGA TGGGTGTGATCACGTCATTCAGTATGTGTGCCTTCTCTATCGTTTGCATT ATTCGCTCCCATGGAAGTACACGCAAGTCGCCCACCCGAAGAACTTGGTA AGAGTTCAGGACGTCCTTTCATCAGCTTGAAACCTGAACAGGCTACATGC GATTTGAATGGGTTGTCAAGCTCTGCCAATCATTCCATTGACAGCCCGTT TTGAAGCACGGTTATTAACGGGACGGCGACTTTGGCCGCCCTCCAATTTC GCCGGCCCTCGAAACTACCCGTGGTCGTTGTTTTGCTGACCCTGCCTGAC AACCCCGTGGACACCAATGTGCTCCCCATTGTATAGATCGTTCAAGACAT GATTGCGGTGGAGGCCACGCAAAGACCGTCCGCTCGCGAAGTCTCTGAGC GGTTAGAGGTGATCCTGCAAGGGCTACCCCAAGTCCCTTAGACAACAACA ACACATCATTTTGGTGCCCAACCGTTTCAAGCAAGTGTGGTTGTGCACCT AGACTTGTCCCAGGACGGCCGGGTTATGAGAGAACGACTCTGATCCTCCA TGCTGTTGTGTCGACTTCGTTGTCGTGGTTGTGGCCGACGTTCGCTGCAG TTCGCTATTGTAGGCATGAGCCGTCGTGCAAAACGGATGCTGAAGGCCTG GTCTGTAGCTTGATTTGAGATTGCATTCGTTCTCCGTGAAGACGTGTCCG GCCGGAGAGAGAGAGAAAATGAGTCCGCTGGCCAGTTAAGTCCTTGTAGT CGCGGAAACTACTCAAGAACTCGATGACCGTTATCACTCAGCTTATTTCG GAAGGGGGGGGGGGGGCACTCATAGCCGTGCAGGCCGTAGTCGTTAGACC AACGCTTGCTTAGGCGGGGCGGGACGATTTCAGTTTTCAACGCCAATCGG TCCTGGTAAGGTGCGTGTGTCCTATTAAAATTGCGACATGAAAGAAAGAA CGCTATGAACAATTTATTGCCCATTTCCCAGACTCTCTGTGGAAGGGATG AATTTGTTTTGGTATTGTGAGAAAAAACACATTTCCGAGTCGGGTAAACG AGAGAGAGTACTTCGTTGTCTTTGTGACGTGCAATGACCATTTTTTACGG AATCTGATTAGACCAGCTGCGCCACGAGAAGTTGCCTCTACTCTCAAGGG GCCGCTGTTGTTGCTGGCGTTCTCTCGGTCGTGCGTGAGGTGGTTAAAAA GGGGTGATGCGTGTGTGCCGATCATTATTTTGTATTTTGTGTGGTTTGTT TTGGTCAGACTCTTTGTTTCTTGTAAGTTCATTATTTTGTATTTTGTGTG GTTTGTTTTGGTCAGACTCTTTGTTTCTTGTAAGTTCGCCATCAATCAAT AATGTAAGTAGATAACCACGTAAAACAAAAATGTCTTGGAAAAACAAAAG ACACCTCCACACGGACTCGAACCAGTGACTTCGAGAGTCAGGGTGGTATT CATCATCGTCAGCTAGAGAGGGGGTGTGGTATTCATCATCAGCTAGAGAG AGGGGGTGGTATTCACCATCATCAGCTAGAGGGGGTTAGAAGCTCAAAAA AATAAAAATGCTGTCTCTGCTCAAAAGTGTGTGATGGGTAATAACCAGAC TAGCACGAAAGGCTGGTCGCACACTAGGCCAAAGTGTAGAAAGGCGTACA GCAGTCACATAACACCACCAATCAATGGTGGTACGTAAAGTGTGTTGTTG GTGTCATGAAAAAGAGAGAGAGAGAGAGAGAGGCTGCTGCTGTTGCTGCA ACCAACTAAATGTTGATCTCTCCTCTCTCTCGGTTTCTCCGCCGATAGCT AACAGCAGTATAGTAGTATAGGGCACACCCTGGTTCTTCTCCGTCGTCTC GCCCTCGCTGTGGTCTGTGTCTCCCTCTCCCCCTTTGTCGATGTCTGGCT CCGTGTGTGTGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8810:540..5502+

>mRNA_Ecto-sp9_F_contig8810.16996.1 ID=mRNA_Ecto-sp9_F_contig8810.16996.1|Name=mRNA_Ecto-sp9_F_contig8810.16996.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1560bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8810:540..5502+ (Ectocarpus species9 EcSCA_722f female)
ATGCTGGCAAGCAACACGAGGCTCGTCGGGGAGGGCCGTGTACGAAAAGT
GTACTTGGCAGAGTACGGGGAACAAACGGTAGCTGTGAAGGTGCTCCAGC
ACCAATCGGATACTCGTTTGCAGCAGATCGAGGTGGCAACCATGGATGCG
ATGCTGGCAAGCAACACGAGGCTCGTCGGGGAGGGCCGTGTACGAAAAGT
GTACTTGGCAGAGTACGGGGAACAAACGGTAGCTGTGAAGGTGCTCCAGC
ACCAATCGGATACTCGTTTGCAGCAGATCGAGGTGGCAACCATGGATGCG
GTCAGGGGCAATCCACACATCGTTCAAACACTGGGCATTTGCAACACCAC
GGTGGTAACCGAGGCCCACATGCTGGATATTCAATCCGCTGTGCGCAAGC
GCACGACGGCTCTACCGATCGGCGAGGCCGTCACGATGTCCTTGGACGCC
GTGAGAGGCCTGCAAGCCCTCCACGAGGCTGTCGGAGGCCCAATCGTACA
CTTCGATATCAAACCAGCCCAGCTTCTGGTGACCGGCAACGGACGAGTGA
AGCTAAACGATTTTAACGTTGCCTGGTTCATGAGCCGACGGCCAGACGGG
AAGCCGTGTCCGTTCAATATGCTGGCCCAAATACGGAATAGCGGCCCCTG
GAGAGCTCCCGAGTACCTCACCCGAAAGGTCAGGGGCAATCCACACATCG
TTCAAACACTGGGCATTTGCAACACCACGGTGGTAACCGAGGCCCACATG
CTGGATATTCAATCCGCTGTGCGCAAGCGCACGACGGCTCTACCGATCGG
CGAGGCCGTCACGATGTCCTTGGACGCCGTGAGAGGCCTGCAAGCCCTCC
ACGAGGCTGTCGGAGGCCCAATCGTACACTTCGATATCAAACCAGCCCAG
CTTCTGGTGACCGGCAACGGACGAGTGAAGCTAAACGATTTTAACGTTGC
CTGGTTCATGAGCCGACGGCCAGACGGGAAGCCGTGTCCGTTCAATATGC
TGGCCCAAATACGGAATAGCGGCCCCTGGAGAGCTCCCGAGTACCTCACC
CGAAAGCCTATGACGGAGAAAATAGATATCTACAGGATGGGTCTAGTATT
TCGAAAATTTGTAGCTGGGGAAGGCATGCGCATGCCAGGGGCGCGGGAAG
CTAAGGGTGCTATCCCCGTTTTCCGCACAACGTGGCACAGGAGCTACAGT
GAGCCTATGACGGAGAAAATAGATATCTACAGGATGGGTCTAGTATTTCG
AAAATTTGTAGCTGGGGAAGGCATGCGCATGCCAGGGGCGCGGGAAGCTA
AGGGTGCTATCCCCGTTTTCCGCACAACGTGGCACAGGAGCTACAGTGAG
ATCGTTCAAGACATGATTGCGGTGGAGGCCACGCAAAGACCGTCCGCTCG
CGAAGTCTCTGAGCGGTTAGAGGTGATCCTGCAAGGGCTACCCCAAGTCC
CTTAGATCGTTCAAGACATGATTGCGGTGGAGGCCACGCAAAGACCGTCC
GCTCGCGAAGTCTCTGAGCGGTTAGAGGTGATCCTGCAAGGGCTACCCCA
AGTCCCTTAG
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