mRNA_Ecto-sp9_F_contig8802.16991.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8802.16991.1
Unique NamemRNA_Ecto-sp9_F_contig8802.16991.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8802.16991.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK58_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.120e-20
Identity = 92/108 (85.19%), Postives = 93/108 (86.11%), Query Frame = 1 
Query:  208 EVNHGDATATAVTRPDGSNAVXXXXXXXXXVLSSAEASAXXXXXHAGGGVPEPXXXXXXXXXXXXXXXVAVAQAVGPAAPSVVDVGGVEGEGGQARQKEAPGTAEVGG 531
            EV+HGDATATAVTRPDGSN  XXXXXXXXX      A  XXXXXHAGGGVPEPXXXXXXXXXXXXXXXVAVAQ VGPAAPSVVDVGGVEGEGGQA QKEAP TA  GG
Sbjct:  791 EVSHGDATATAVTRPDGSN-XXXXXXXXXXXXXXXXAXXXXXXXHAGGGVPEPXXXXXXXXXXXXXXXVAVAQGVGPAAPSVVDVGGVEGEGGQAGQKEAPATAADGG 897
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BLAST of mRNA_Ecto-sp9_F_contig8802.16991.1 vs.
Match: Histone (acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 6.820e-19
Identity = 66/110 (60.00%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:  208 EVNHGDATATAVTRPDGSNAVXXXXXXXXX--VLSSAEASAXXXXXHAGGGVPEPXXXXXXXXXXXXXXXVAVAQAVGPAAPSVVDVGGVEGEGGQARQKEAPGTAEVGG 531
            EVNHGDATATAVTRPDGSNAV           VLSSAEASA     HA GG PEP               VAVAQAV  AAP V DV GVEG+ GQARQKEAP T   GG
Sbjct: 2647 EVNHGDATATAVTRPDGSNAVAAAAPAGGRSRVLSSAEASATTAAAHAVGGEPEPGGRAEETG-------VAVAQAVALAAPPVGDVRGVEGQEGQARQKEAPATTADGG 2749
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8802.16991.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.120e-2085.19protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Histone6.820e-1960.00acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8802contigEcto-sp9_F_contig8802:4449..5281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue2e-20
Seed eggNOG ortholog2880.D7FK58
KEGG koko:K11798
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1474@2759,KOG1778@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size835
Cds size537
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.897918-CDS-Ecto-sp9_F_contig8802:4448..49851622930931.897918-CDS-Ecto-sp9_F_contig8802:4448..4985Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8802 4449..4985 +
1692278954.644755-CDS-Ecto-sp9_F_contig8802:4448..49851692278954.644755-CDS-Ecto-sp9_F_contig8802:4448..4985Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8802 4449..4985 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.913679-UTR-Ecto-sp9_F_contig8802:4985..52811622930931.913679-UTR-Ecto-sp9_F_contig8802:4985..5281Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8802 4986..5281 +
1692278954.6654918-UTR-Ecto-sp9_F_contig8802:4985..52811692278954.6654918-UTR-Ecto-sp9_F_contig8802:4985..5281Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8802 4986..5281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8802.16991.1prot_Ecto-sp9_F_contig8802.16991.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8802 4449..4985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8802.16991.1

>prot_Ecto-sp9_F_contig8802.16991.1 ID=prot_Ecto-sp9_F_contig8802.16991.1|Name=mRNA_Ecto-sp9_F_contig8802.16991.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=179bp
TAAVGGAIAATTTTTPAAAAVVTPAAAPSVLPADDGGDEAGLNHLLSPPP
PPPPTRGLRAVAGGGGGGGEVNHGDATATAVTRPDGSNAVAAAAGGSSRV
LSSAEASAATAAAHAGGGVPEPGGGVPEPGGRVEETGVAVAQAVGPAAPS
VVDVGGVEGEGGQARQKEAPGTAEVGGL*
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mRNA from alignment at Ecto-sp9_F_contig8802:4449..5281+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8802.16991.1 ID=mRNA_Ecto-sp9_F_contig8802.16991.1|Name=mRNA_Ecto-sp9_F_contig8802.16991.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=833bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8802:4449..5281+ (Ectocarpus species9 EcSCA_722f female)
ACTGCCGCCGTTGGCGGCGCGATCGCGGCGACGACGACGACAACACCGGC
AGCAGCAGCGGTGGTGACACCGGCGGCGGCGCCAAGCGTTCTCCCGGCAG
ACGACGGCGGCGACGAGGCCGGGCTGAACCACCTGCTGTCTCCGCCGCCG
CCGCCTCCGCCGACCCGAGGCTTACGAGCTGTGGCCGGCGGCGGCGGCGG
TGGTGGCGAGGTAAATCACGGCGACGCAACGGCAACGGCGGTGACGCGCC
CGGACGGGAGCAACGCTGTCGCCGCCGCCGCAGGCGGTAGCAGCAGAGTT
CTATCGAGCGCGGAGGCCTCCGCTGCAACGGCGGCGGCGCATGCGGGTGG
AGGTGTACCAGAACCCGGTGGAGGTGTACCGGAACCGGGCGGAAGGGTGG
AGGAAACGGGAGTTGCGGTGGCGCAGGCGGTAGGTCCGGCAGCTCCTTCC
GTGGTTGACGTTGGTGGCGTGGAGGGAGAGGGGGGCCAAGCCAGGCAAAA
GGAGGCTCCTGGAACGGCAGAAGTAGGTGGCCTTTGAAGTGGTGTAGGCA
CTGACACCGGCGGAAAGGAAGATCAAATTAGAGAGAGCGAGAACCACGGT
CGTACGTGGGCGTATCGATCGGAGTGGGGTTTTCGTGCTGCTGCCGCTGG
ATTGGGGACCCCCGGCCTCCTTGCCGTCCAAGTGACCGGCCGGACGGGAT
GGAGTTTGGGCTGGTCACTGTTGTGCTGTTCTGACGGGAGGTCGGCTTCG
TCTGGATGTTGTGTGAGATCTTGTTTGTTATTCTCGGCTTGTTCAGCAAG
ACAGAACGTTGCGAGGCATGTGCTTGGGGAGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8802:4449..5281+

>mRNA_Ecto-sp9_F_contig8802.16991.1 ID=mRNA_Ecto-sp9_F_contig8802.16991.1|Name=mRNA_Ecto-sp9_F_contig8802.16991.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8802:4449..5281+ (Ectocarpus species9 EcSCA_722f female)
ACTGCCGCCGTTGGCGGCGCGATCGCGGCGACGACGACGACAACACCGGC
AGCAGCAGCGGTGGTGACACCGGCGGCGGCGCCAAGCGTTCTCCCGGCAG
ACGACGGCGGCGACGAGGCCGGGCTGAACCACCTGCTGTCTCCGCCGCCG
CCGCCTCCGCCGACCCGAGGCTTACGAGCTGTGGCCGGCGGCGGCGGCGG
TGGTGGCGAGGTAAATCACGGCGACGCAACGGCAACGGCGGTGACGCGCC
CGGACGGGAGCAACGCTGTCGCCGCCGCCGCAGGCGGTAGCAGCAGAGTT
CTATCGAGCGCGGAGGCCTCCGCTGCAACGGCGGCGGCGCATGCGGGTGG
AGGTGTACCAGAACCCGGTGGAGGTGTACCGGAACCGGGCGGAAGGGTGG
AGGAAACGGGAGTTGCGGTGGCGCAGGCGGTAGGTCCGGCAGCTCCTTCC
GTGGTTGACGTTGGTGGCGTGGAGGGAGAGGGGGGCCAAGCCAGGCAAAA
GGAGGCTCCTGGAACGGCAGAAGTAGGTGGCCTTTGAACTGCCGCCGTTG
GCGGCGCGATCGCGGCGACGACGACGACAACACCGGCAGCAGCAGCGGTG
GTGACACCGGCGGCGGCGCCAAGCGTTCTCCCGGCAGACGACGGCGGCGA
CGAGGCCGGGCTGAACCACCTGCTGTCTCCGCCGCCGCCGCCTCCGCCGA
CCCGAGGCTTACGAGCTGTGGCCGGCGGCGGCGGCGGTGGTGGCGAGGTA
AATCACGGCGACGCAACGGCAACGGCGGTGACGCGCCCGGACGGGAGCAA
CGCTGTCGCCGCCGCCGCAGGCGGTAGCAGCAGAGTTCTATCGAGCGCGG
AGGCCTCCGCTGCAACGGCGGCGGCGCATGCGGGTGGAGGTGTACCAGAA
CCCGGTGGAGGTGTACCGGAACCGGGCGGAAGGGTGGAGGAAACGGGAGT
TGCGGTGGCGCAGGCGGTAGGTCCGGCAGCTCCTTCCGTGGTTGACGTTG
GTGGCGTGGAGGGAGAGGGGGGCCAAGCCAGGCAAAAGGAGGCTCCTGGA
ACGGCAGAAGTAGGTGGCCTTTGA
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