mRNA_Ecto-sp9_F_contig8802.16989.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8802.16989.1
Unique NamemRNA_Ecto-sp9_F_contig8802.16989.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8802.16989.1 vs.
Match: Histone (acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.820e-45
Identity = 131/150 (87.33%), Postives = 132/150 (88.00%), Query Frame = 1 
Query:  175 GSPPPLTLDPPHPSAANGAAASVSVLNPASXXXXXXXXXXXXXEQAVKAAAGGSARPASSMSLPWITAPGXXXXXXXXXXXXXXXXXEDQQQNQRAGLIRAMSVDSAPSPARPHARSLSFTGSGGGASDGLGGGLGQASSGSEAFGINVN 624
            GSPPPLTL+PPHPSAANGAAA VSVLNPAS XXXXXXXXXXXX QA  AAAGGSARPASS SLPWITAPG XXXXXXXXXXXXXXXX DQQQNQRAGLIRAMSVDSAPSPARPHARSLSFTG          GGLGQASSGSEAFGINVN
Sbjct: 2102 GSPPPLTLEPPHPSAANGAAAIVSVLNPASAXXXXXXXXXXXXXQAANAAAGGSARPASSKSLPWITAPGAXXXXXXXXXXXXXXXXXDQQQNQRAGLIRAMSVDSAPSPARPHARSLSFTG----------GGLGQASSGSEAFGINVN 2241
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BLAST of mRNA_Ecto-sp9_F_contig8802.16989.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK58_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.540e-35
Identity = 89/99 (89.90%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:  328 GGSARPASSMSLPWITAPGXXXXXXXXXXXXXXXXXEDQQQNQRAGLIRAMSVDSAPSPARPHARSLSFTGSGGGASDGLGGGLGQASSGSEAFGINVN 624
            GGSARPASSMSLPWITAPG XXXXXXXXX       EDQQQNQRAGLIRAMSVDSAPSPARPHARSLSFTGSGGGASDGLGGGLGQASSGSEAFGI +N
Sbjct:  330 GGSARPASSMSLPWITAPGAXXXXXXXXXLTEERMPEDQQQNQRAGLIRAMSVDSAPSPARPHARSLSFTGSGGGASDGLGGGLGQASSGSEAFGIKMN 428
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8802.16989.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Histone2.820e-4587.33acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
Uncharacterized1.540e-3589.90protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8802contigEcto-sp9_F_contig8802:1412..2035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue1.5e-32
Seed eggNOG ortholog2880.D7FK58
KEGG koko:K11798
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1474@2759,KOG1778@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size625
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.8536928-CDS-Ecto-sp9_F_contig8802:1411..20351622930931.8536928-CDS-Ecto-sp9_F_contig8802:1411..2035Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8802 1412..2035 +
1692278954.5945895-CDS-Ecto-sp9_F_contig8802:1411..20351692278954.5945895-CDS-Ecto-sp9_F_contig8802:1411..2035Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8802 1412..2035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8802.16989.1prot_Ecto-sp9_F_contig8802.16989.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8802 1412..2035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8802.16989.1

>prot_Ecto-sp9_F_contig8802.16989.1 ID=prot_Ecto-sp9_F_contig8802.16989.1|Name=mRNA_Ecto-sp9_F_contig8802.16989.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=208bp
LTATPAAAAAAATAASANPSEASAPAAVAAAVAVAPVPQAPGPTTPGSEA
GGGIARGSGSPPPLTLDPPHPSAANGAAASVSVLNPASAAGATAASTTPT
PEQAVKAAAGGSARPASSMSLPWITAPGATATAATARPLAEEPMPEDQQQ
NQRAGLIRAMSVDSAPSPARPHARSLSFTGSGGGASDGLGGGLGQASSGS
EAFGINVN
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mRNA from alignment at Ecto-sp9_F_contig8802:1412..2035+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8802.16989.1 ID=mRNA_Ecto-sp9_F_contig8802.16989.1|Name=mRNA_Ecto-sp9_F_contig8802.16989.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=624bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8802:1412..2035+ (Ectocarpus species9 EcSCA_722f female)
CTGACTGCAACCCCGGCAGCAGCAGCAGCAGCAGCAACAGCAGCCTCTGC
CAATCCTTCCGAAGCCTCGGCGCCAGCAGCAGTAGCAGCAGCAGTAGCGG
TGGCACCCGTCCCGCAGGCTCCTGGACCGACAACTCCTGGCTCGGAAGCG
GGCGGCGGCATTGCTCGAGGTTCCGGTTCGCCACCGCCGCTGACGCTGGA
TCCGCCCCACCCTTCGGCGGCTAACGGCGCTGCTGCTAGCGTTAGCGTCT
TGAACCCAGCCAGTGCTGCTGGTGCTACCGCTGCATCGACTACCCCAACG
CCGGAGCAGGCGGTGAAGGCTGCCGCCGGCGGGAGCGCGCGACCGGCCTC
CTCCATGTCGTTGCCGTGGATAACAGCTCCTGGCGCCACTGCCACGGCCG
CTACCGCGCGCCCGCTCGCAGAGGAGCCCATGCCGGAGGACCAGCAGCAG
AACCAGCGGGCGGGGCTCATCCGCGCGATGAGCGTCGACTCCGCTCCGTC
GCCGGCTAGACCCCACGCCCGGAGCTTGAGCTTCACCGGGAGCGGGGGGG
GGGCGTCCGATGGGCTCGGAGGCGGATTGGGACAGGCTTCCTCGGGCTCG
GAGGCGTTCGGAATCAACGTGAAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8802:1412..2035+

>mRNA_Ecto-sp9_F_contig8802.16989.1 ID=mRNA_Ecto-sp9_F_contig8802.16989.1|Name=mRNA_Ecto-sp9_F_contig8802.16989.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1248bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8802:1412..2035+ (Ectocarpus species9 EcSCA_722f female)
CTGACTGCAACCCCGGCAGCAGCAGCAGCAGCAGCAACAGCAGCCTCTGC
CAATCCTTCCGAAGCCTCGGCGCCAGCAGCAGTAGCAGCAGCAGTAGCGG
TGGCACCCGTCCCGCAGGCTCCTGGACCGACAACTCCTGGCTCGGAAGCG
GGCGGCGGCATTGCTCGAGGTTCCGGTTCGCCACCGCCGCTGACGCTGGA
TCCGCCCCACCCTTCGGCGGCTAACGGCGCTGCTGCTAGCGTTAGCGTCT
TGAACCCAGCCAGTGCTGCTGGTGCTACCGCTGCATCGACTACCCCAACG
CCGGAGCAGGCGGTGAAGGCTGCCGCCGGCGGGAGCGCGCGACCGGCCTC
CTCCATGTCGTTGCCGTGGATAACAGCTCCTGGCGCCACTGCCACGGCCG
CTACCGCGCGCCCGCTCGCAGAGGAGCCCATGCCGGAGGACCAGCAGCAG
AACCAGCGGGCGGGGCTCATCCGCGCGATGAGCGTCGACTCCGCTCCGTC
GCCGGCTAGACCCCACGCCCGGAGCTTGAGCTTCACCGGGAGCGGGGGGG
GGGCGTCCGATGGGCTCGGAGGCGGATTGGGACAGGCTTCCTCGGGCTCG
GAGGCGTTCGGAATCAACGTGAACCTGACTGCAACCCCGGCAGCAGCAGC
AGCAGCAGCAACAGCAGCCTCTGCCAATCCTTCCGAAGCCTCGGCGCCAG
CAGCAGTAGCAGCAGCAGTAGCGGTGGCACCCGTCCCGCAGGCTCCTGGA
CCGACAACTCCTGGCTCGGAAGCGGGCGGCGGCATTGCTCGAGGTTCCGG
TTCGCCACCGCCGCTGACGCTGGATCCGCCCCACCCTTCGGCGGCTAACG
GCGCTGCTGCTAGCGTTAGCGTCTTGAACCCAGCCAGTGCTGCTGGTGCT
ACCGCTGCATCGACTACCCCAACGCCGGAGCAGGCGGTGAAGGCTGCCGC
CGGCGGGAGCGCGCGACCGGCCTCCTCCATGTCGTTGCCGTGGATAACAG
CTCCTGGCGCCACTGCCACGGCCGCTACCGCGCGCCCGCTCGCAGAGGAG
CCCATGCCGGAGGACCAGCAGCAGAACCAGCGGGCGGGGCTCATCCGCGC
GATGAGCGTCGACTCCGCTCCGTCGCCGGCTAGACCCCACGCCCGGAGCT
TGAGCTTCACCGGGAGCGGGGGGGGGGCGTCCGATGGGCTCGGAGGCGGA
TTGGGACAGGCTTCCTCGGGCTCGGAGGCGTTCGGAATCAACGTGAAC
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