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Homology
BLAST of mRNA_Ecto-sp9_F_contig8801.16988.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI9_ECTSI) HSP 1 Score: 654 bits (1686), Expect = 4.470e-222 Identity = 415/453 (91.61%), Postives = 423/453 (93.38%), Query Frame = 1
Query: 1 MMVLAEEDDLVARTAXXXXXXXXXXRTECFEPSLLPASPDGGDIWGGPLEPSALGGLPILVLCVLGLVSVAWTAFGAATSSGREPNSKKEARVVPPSRSGERNASAPKPXXXXXXXXXXXXXXXP-SGGLTAVEPPGSAEATLPARGDDNHGIFDEGEHSAKVSSSFGRRLSRPDSTAAG-GDRARMEPGGSAGNGGVGMFFNGSAGREGGARVGVDSLGGGVGAAGRGRRPSVSGCLADDGXXXXXXGSSTCGENEWGPDGWKEGEDFWRTSSFASSSVADASLLEDAAAAADRDGAAAAA-RWAEAKATHDGVGLVAAADSKLEQRHATGTTEPRSPAGAEVAAAGKRNEGKPGGXXXXXXXXXXXXXXXXXXXRLMATVRGLLVELEEDLDTARVLLPECNRFRKVVRCVAESAMGLIEALREATEFSRTLSSPEAFLVVMAELLLDGFE 1350
MMVLAEED+LVARTA XXXXX RTECFEP+LLPASPDGGDIWGGPLEPSALGGLPILVLCVLGLVSVAWTAFGAATSSGREPNS KEARVVPPSRSGER+ASAP XXXXXXXXXXXXXXXP SGGLTAVEPPGSAEAT PARGDDNHGIFDEGEHSAKVSSSFGRRLSRPDSTAAG GDRARMEPGGSAGNGGVGMFFNGS GREGGARVGVDSLGG VGAAGRGRRPSVSG L DDGXXXXX SSTCGEN W PDGW+EGED WRTSSFASSSVADASLLEDAAAAADRDG R AEAKATHDGVGLVAAADSKLEQRHATGTTEPRSPAGAEVAAAGK+NEGKPGGXXXXXXXXXXXXXXXXXX R +ATVRGLLVELEEDLD ARVLLPECNRFRKVVRCVAESAMGLIEALREATEFSRTLSSPEAFLV+MAELL+DGFE
Sbjct: 1 MMVLAEEDNLVARTAACGSXXXXXGRTECFEPALLPASPDGGDIWGGPLEPSALGGLPILVLCVLGLVSVAWTAFGAATSSGREPNSNKEARVVPPSRSGERSASAPXXXXXXXXXXXXXXXXXPPSGGLTAVEPPGSAEATPPARGDDNHGIFDEGEHSAKVSSSFGRRLSRPDSTAAGCGDRARMEPGGSAGNGGVGMFFNGSTGREGGARVGVDSLGGRVGAAGRGRRPSVSGILDDDGXXXXX--SSTCGENGWDPDGWREGEDSWRTSSFASSSVADASLLEDAAAAADRDGXXXXXXRRAEAKATHDGVGLVAAADSKLEQRHATGTTEPRSPAGAEVAAAGKKNEGKPGGXXXXXXXXXXXXXXXXXXRRFLATVRGLLVELEEDLDAARVLLPECNRFRKVVRCVAESAMGLIEALREATEFSRTLSSPEAFLVIMAELLMDGFE 451
BLAST of mRNA_Ecto-sp9_F_contig8801.16988.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ0_9PHAE) HSP 1 Score: 641 bits (1653), Expect = 1.750e-216 Identity = 404/461 (87.64%), Postives = 407/461 (88.29%), Query Frame = 1
Query: 1 MMVLAEEDDLVARTAXXXXXXXXXXRTECFEPSLLPASPDGGDIWGGPLEPSALGGLPILVLCVLGLVSVAWTAFGAATSSGREPNSKKEARVVPPSRSGERNASAPKPXXXXXXXXXXXXXXXPSGGLTAVEPPGSAEATLPARGDDNHGIFDEGEHSAKVSSSFGRRLSRPDSTAAGGDRARMEPGGSAGNGGVGMFFNGSAGREGGARVGVDSLGGGVGAAGRGRRPSVSGCLADDGXXXXXXGSSTCGENEWGPDGWKEGEDFWRTSSFASSSVADASLLEDAAAAADRDGAAAAARWAEAKATHDGVGLVAAADSKLEQRHATGTTEPRSPAGAEVAAAGKRNEGKPGGXXXXXXXXXXXXXXXXXXXRLMATVRGLLVELEEDLDTARVLLPECNRFRKVVRCVAES-----------AMGLIEALREATEFSRTLSSPEAFLVVMAELLLDGFE 1350
MMVLAEE DLVARTA XXXX R ECFEPSLLPASPDGGDIWGGPLEPSALGGLPILVLCVLGLVSVAWTAFGAATSSGRE NS KEARVVPPSRSGERNAS PK XXXXXXXXXXXXXXPSGGLTAV+PPGSAEAT PAR DDNHGIFDEGEHSAKVSSSFGR LSRPDS A GGDRARMEPGGSAGNGGVGMFFNGSAGREGGAR GVDSLGGGVGAAGRGRRPSVSGCLADDG SSTCGEN W PDGWKEGED WRTSSFASSSVADASLLEDAAAAAD DGAAAAAR EAKATHDGVGLVAAADSKLEQR A GTTEP SPAG EVAA GK+N GKPG XXXXXXXXXXXXXXXXXX R +ATVR LLVELEEDLD ARVLLPECNRFRKVVRCVAES AMGLIEALREATEFSRTLSSPEAFLVVMAELLLDGFE
Sbjct: 31 MMVLAEEGDLVARTAACGSGXXXXGRIECFEPSLLPASPDGGDIWGGPLEPSALGGLPILVLCVLGLVSVAWTAFGAATSSGRESNSNKEARVVPPSRSGERNASTPK--XXXXXXXXXXXXXXPSGGLTAVKPPGSAEATTPARSDDNHGIFDEGEHSAKVSSSFGRPLSRPDSAAVGGDRARMEPGGSAGNGGVGMFFNGSAGREGGARFGVDSLGGGVGAAGRGRRPSVSGCLADDGGGDGD--SSTCGENGWDPDGWKEGEDSWRTSSFASSSVADASLLEDAAAAADTDGAAAAARRVEAKATHDGVGLVAAADSKLEQRPAAGTTEPTSPAGEEVAAVGKKNAGKPGXXXXXXXXXXXXXXXXXXXRRFLATVRELLVELEEDLDAARVLLPECNRFRKVVRCVAESVGPGMDARPRQAMGLIEALREATEFSRTLSSPEAFLVVMAELLLDGFE 487
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Ec32 ortholog description | GAF domain-like |
| Ec32 ortholog | Ec-28_001830.1 |
| Hectar predicted targeting category | signal anchor |
| Exons | 3 |
| Model size | 1350 |
| Cds size | 1350 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930931.7371287-CDS-Ecto-sp9_F_contig8801:317..428 | 1622930931.7371287-CDS-Ecto-sp9_F_contig8801:317..428 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8801 318..428 - |
| 1692278954.5509245-CDS-Ecto-sp9_F_contig8801:317..428 | 1692278954.5509245-CDS-Ecto-sp9_F_contig8801:317..428 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8801 318..428 - |
| 1622930931.754811-CDS-Ecto-sp9_F_contig8801:1022..2126 | 1622930931.754811-CDS-Ecto-sp9_F_contig8801:1022..2126 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8801 1023..2126 - |
| 1692278954.5630932-CDS-Ecto-sp9_F_contig8801:1022..2126 | 1692278954.5630932-CDS-Ecto-sp9_F_contig8801:1022..2126 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8801 1023..2126 - |
| 1622930931.767601-CDS-Ecto-sp9_F_contig8801:2592..2727 | 1622930931.767601-CDS-Ecto-sp9_F_contig8801:2592..2727 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8801 2593..2727 - |
| 1692278954.5742545-CDS-Ecto-sp9_F_contig8801:2592..2727 | 1692278954.5742545-CDS-Ecto-sp9_F_contig8801:2592..2727 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig8801 2593..2727 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8801.16988.1 >prot_Ecto-sp9_F_contig8801.16988.1 ID=prot_Ecto-sp9_F_contig8801.16988.1|Name=mRNA_Ecto-sp9_F_contig8801.16988.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=450bp
MMVLAEEDDLVARTAACGSGGGGGGRTECFEPSLLPASPDGGDIWGGPLE PSALGGLPILVLCVLGLVSVAWTAFGAATSSGREPNSKKEARVVPPSRSG ERNASAPKPPAPALAPSPPPPPSPPSGGLTAVEPPGSAEATLPARGDDNH GIFDEGEHSAKVSSSFGRRLSRPDSTAAGGDRARMEPGGSAGNGGVGMFF NGSAGREGGARVGVDSLGGGVGAAGRGRRPSVSGCLADDGDGDGDGGSST CGENEWGPDGWKEGEDFWRTSSFASSSVADASLLEDAAAAADRDGAAAAA RWAEAKATHDGVGLVAAADSKLEQRHATGTTEPRSPAGAEVAAAGKRNEG KPGGGARALAAEREEQEKEEEERRLMATVRGLLVELEEDLDTARVLLPEC NRFRKVVRCVAESAMGLIEALREATEFSRTLSSPEAFLVVMAELLLDGFE back to topmRNA from alignment at Ecto-sp9_F_contig8801:318..2727- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig8801.16988.1 ID=mRNA_Ecto-sp9_F_contig8801.16988.1|Name=mRNA_Ecto-sp9_F_contig8801.16988.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2410bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8801:318..2727- (Ectocarpus species9 EcSCA_722f female) ATGATGGTGCTTGCTGAAGAGGATGACCTCGTTGCCCGAACGGCTGCGTG
CGGGAGCGGCGGGGGCGGGGGTGGGAGAACAGAGTGCTTCGAGCCCTCCT
TGCTCCCAGCATCACCGGATGGCGGCGATATATGGGTGAGAGACGTGTGG
CAGTAGCGGCTACATCGTTCGTTTTCCGATGTTGGTCCAGACCCGGTCAC
GCACATCGTTTATTTTGTTGATCTTTACGCCGTGCTTGATGAGTAGCGAT
TTGTTCAAGAGTCTAGTCGGGGACAGCCTCCATTCCTATCTGAGCCCCTC
CCCCCCCCCCCCCCCCCCCCCCCCCCCGGCGGATGGCAAAGTAACGATTA
GCCATCATCGGTGATCGGTCCTGTGGGACCAATGCCCCGTCCGCTCAAGG
ACGCGTGTCCAACCGCGAACGCATGCAATACATGAGAGTACCCCCCCCCG
CCCCCGGGATGATGGTACGCTGCATCCTCCTACAAATCTCCGCCGCACGT
TGACTTGCCTGGATATCTCATGGGCCAGCTGCCTGCATCAATACCACCTG
CCATTTCGCTGAAAACCGTTTCTCTTCCTAAAAATATCGAACACACAAAA
GGGGGGCCCGCTGGAGCCGTCGGCGCTGGGCGGGCTTCCGATCCTTGTGC
TCTGCGTGCTGGGGCTGGTCAGCGTGGCGTGGACGGCCTTCGGCGCGGCG
ACATCTTCCGGCAGGGAGCCCAACAGCAAGAAGGAGGCCCGAGTCGTGCC
GCCATCGCGAAGCGGGGAGAGAAACGCCTCGGCGCCAAAGCCGCCGGCAC
CGGCACTGGCACCGTCCCCGCCGCCGCCGCCGTCCCCGCCGTCAGGTGGG
CTGACGGCGGTGGAACCGCCGGGGTCGGCAGAGGCAACGCTCCCGGCGCG
TGGTGACGACAATCACGGCATCTTCGACGAGGGTGAGCACTCGGCGAAGG
TCTCGTCGTCGTTTGGAAGGCGTTTGTCGAGACCCGATTCGACCGCCGCA
GGCGGCGATCGCGCTCGCATGGAGCCTGGAGGCTCGGCCGGAAACGGTGG
TGTCGGGATGTTCTTCAACGGTAGCGCCGGCCGCGAGGGCGGGGCGAGAG
TCGGTGTTGATAGCCTTGGAGGAGGGGTGGGTGCGGCGGGTAGAGGAAGA
CGACCGTCCGTGAGCGGTTGCCTCGCTGACGACGGGGACGGGGACGGCGA
CGGCGGCAGCTCTACGTGCGGGGAGAACGAGTGGGGCCCCGACGGATGGA
AAGAGGGGGAGGACTTCTGGCGAACCTCGTCATTCGCGTCGTCCTCGGTC
GCCGACGCTAGCCTCCTAGAGGACGCGGCCGCTGCCGCCGATAGGGACGG
GGCGGCGGCGGCGGCAAGGTGGGCGGAGGCCAAGGCAACGCACGACGGCG
TTGGGCTTGTCGCCGCTGCCGACTCGAAATTGGAGCAGCGGCACGCGACG
GGAACAACGGAACCGAGAAGTCCTGCTGGAGCGGAGGTGGCAGCGGCGGG
GAAGAGGAACGAGGGTAAGCCGGGAGGCGGCGCAAGAGCTCTCGCGGCGG
AGAGAGAAGAGCAGGAGAAGGAGGAGGAAGAGCGGCGGCTTATGGCGACC
GTGAGGGGACTCCTCGTGGAGCTCGAGGAGGACTTGGACACGGCGCGAGT
CCTCCTGCCGGAGTGCAACCGCTTCCGCAAGGTCGTTCGTTGCGTGGCTG
AGTCGGTGGGTCCTGGTATGGACGCCCGTCCACGGCAGGTGAGACATTCC
GCGGAGCCGCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCC
CCCCCCCCACCCTCCTCCAGACCCAACACCCCCACCCGCCTGCGACGGGG
GTCCGCAACCACACNNNNNNNNNNGGGGCGGGTCGGGTATGGCCCCCGCT
CCGCGGCAGCGGGAAAATCTCGGGGGCCCCCCCCCCCCCCCCCCCCCCCC
CCTCCGAGTTTTCTTCTACACACGTGACTTACGTTGACGAAAACCCACAA
AGGCGCGACGTTTGATCGACGGTACAACCAGGACTGGAAGTGACGCATGC
ACCAGTCCCCGAGCGGCGGGCGTTCCACTCGATGCCATCCCATACGTCCA
CATATTTCTGTGCCCTCTAAAACCAATCCCGCAGCCCTGCACATCATTGT
TTTTTGCGTGCTCGACACGCGAATTATCAAGGCTTGTAGAGGTTTGGCGA
GGCTTTTGTTGTTTTGTTCAAAGGAGATAAGCGTCATGTGTGTTTGTTTG
TACTTTCCGCAACTCCCGACCGTGGACTCATTGCTGCCGTGCTGTTTAGG
CGATGGGCCTGATAGAGGCCTTGAGGGAGGCGACCGAGTTCAGCCGCACC
CTTTCGTCTCCGGAGGCATTTCTTGTTGTCATGGCGGAGCTGCTATTGGA
TGGCTTCGAG back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig8801:318..2727- >mRNA_Ecto-sp9_F_contig8801.16988.1 ID=mRNA_Ecto-sp9_F_contig8801.16988.1|Name=mRNA_Ecto-sp9_F_contig8801.16988.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2700bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8801:318..2727- (Ectocarpus species9 EcSCA_722f female) ATGATGGTGCTTGCTGAAGAGGATGACCTCGTTGCCCGAACGGCTGCGTG CGGGAGCGGCGGGGGCGGGGGTGGGAGAACAGAGTGCTTCGAGCCCTCCT TGCTCCCAGCATCACCGGATGGCGGCGATATATGGATGATGGTGCTTGCT GAAGAGGATGACCTCGTTGCCCGAACGGCTGCGTGCGGGAGCGGCGGGGG CGGGGGTGGGAGAACAGAGTGCTTCGAGCCCTCCTTGCTCCCAGCATCAC CGGATGGCGGCGATATATGGGGGGGCCCGCTGGAGCCGTCGGCGCTGGGC GGGCTTCCGATCCTTGTGCTCTGCGTGCTGGGGCTGGTCAGCGTGGCGTG GACGGCCTTCGGCGCGGCGACATCTTCCGGCAGGGAGCCCAACAGCAAGA AGGAGGCCCGAGTCGTGCCGCCATCGCGAAGCGGGGAGAGAAACGCCTCG GCGCCAAAGCCGCCGGCACCGGCACTGGCACCGTCCCCGCCGCCGCCGCC GTCCCCGCCGTCAGGTGGGCTGACGGCGGTGGAACCGCCGGGGTCGGCAG AGGCAACGCTCCCGGCGCGTGGTGACGACAATCACGGCATCTTCGACGAG GGTGAGCACTCGGCGAAGGTCTCGTCGTCGTTTGGAAGGCGTTTGTCGAG ACCCGATTCGACCGCCGCAGGCGGCGATCGCGCTCGCATGGAGCCTGGAG GCTCGGCCGGAAACGGTGGTGTCGGGATGTTCTTCAACGGTAGCGCCGGC CGCGAGGGCGGGGCGAGAGTCGGTGTTGATAGCCTTGGAGGAGGGGTGGG TGCGGCGGGTAGAGGAAGACGACCGTCCGTGAGCGGTTGCCTCGCTGACG ACGGGGACGGGGACGGCGACGGCGGCAGCTCTACGTGCGGGGAGAACGAG TGGGGCCCCGACGGATGGAAAGAGGGGGAGGACTTCTGGCGAACCTCGTC ATTCGCGTCGTCCTCGGTCGCCGACGCTAGCCTCCTAGAGGACGCGGCCG CTGCCGCCGATAGGGACGGGGCGGCGGCGGCGGCAAGGTGGGCGGAGGCC AAGGCAACGCACGACGGCGTTGGGCTTGTCGCCGCTGCCGACTCGAAATT GGAGCAGCGGCACGCGACGGGAACAACGGAACCGAGAAGTCCTGCTGGAG CGGAGGTGGCAGCGGCGGGGAAGAGGAACGAGGGTAAGCCGGGAGGCGGC GCAAGAGCTCTCGCGGCGGAGAGAGAAGAGCAGGAGAAGGAGGAGGAAGA GCGGCGGCTTATGGCGACCGTGAGGGGACTCCTCGTGGAGCTCGAGGAGG ACTTGGACACGGCGCGAGTCCTCCTGCCGGAGTGCAACCGCTTCCGCAAG GTCGTTCGTTGCGTGGCTGAGTCGGGGGGCCCGCTGGAGCCGTCGGCGCT GGGCGGGCTTCCGATCCTTGTGCTCTGCGTGCTGGGGCTGGTCAGCGTGG CGTGGACGGCCTTCGGCGCGGCGACATCTTCCGGCAGGGAGCCCAACAGC AAGAAGGAGGCCCGAGTCGTGCCGCCATCGCGAAGCGGGGAGAGAAACGC CTCGGCGCCAAAGCCGCCGGCACCGGCACTGGCACCGTCCCCGCCGCCGC CGCCGTCCCCGCCGTCAGGTGGGCTGACGGCGGTGGAACCGCCGGGGTCG GCAGAGGCAACGCTCCCGGCGCGTGGTGACGACAATCACGGCATCTTCGA CGAGGGTGAGCACTCGGCGAAGGTCTCGTCGTCGTTTGGAAGGCGTTTGT CGAGACCCGATTCGACCGCCGCAGGCGGCGATCGCGCTCGCATGGAGCCT GGAGGCTCGGCCGGAAACGGTGGTGTCGGGATGTTCTTCAACGGTAGCGC CGGCCGCGAGGGCGGGGCGAGAGTCGGTGTTGATAGCCTTGGAGGAGGGG TGGGTGCGGCGGGTAGAGGAAGACGACCGTCCGTGAGCGGTTGCCTCGCT GACGACGGGGACGGGGACGGCGACGGCGGCAGCTCTACGTGCGGGGAGAA CGAGTGGGGCCCCGACGGATGGAAAGAGGGGGAGGACTTCTGGCGAACCT CGTCATTCGCGTCGTCCTCGGTCGCCGACGCTAGCCTCCTAGAGGACGCG GCCGCTGCCGCCGATAGGGACGGGGCGGCGGCGGCGGCAAGGTGGGCGGA GGCCAAGGCAACGCACGACGGCGTTGGGCTTGTCGCCGCTGCCGACTCGA AATTGGAGCAGCGGCACGCGACGGGAACAACGGAACCGAGAAGTCCTGCT GGAGCGGAGGTGGCAGCGGCGGGGAAGAGGAACGAGGGTAAGCCGGGAGG CGGCGCAAGAGCTCTCGCGGCGGAGAGAGAAGAGCAGGAGAAGGAGGAGG AAGAGCGGCGGCTTATGGCGACCGTGAGGGGACTCCTCGTGGAGCTCGAG GAGGACTTGGACACGGCGCGAGTCCTCCTGCCGGAGTGCAACCGCTTCCG CAAGGTCGTTCGTTGCGTGGCTGAGTCGGCGATGGGCCTGATAGAGGCCT TGAGGGAGGCGACCGAGTTCAGCCGCACCCTTTCGTCTCCGGAGGCATTT CTTGTTGTCATGGCGGAGCTGCTATTGGATGGCTTCGAGGCGATGGGCCT GATAGAGGCCTTGAGGGAGGCGACCGAGTTCAGCCGCACCCTTTCGTCTC CGGAGGCATTTCTTGTTGTCATGGCGGAGCTGCTATTGGATGGCTTCGAG back to top
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