mRNA_Ecto-sp9_F_contig88.16985.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig88.16985.1
Unique NamemRNA_Ecto-sp9_F_contig88.16985.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig88.16985.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig88contigEcto-sp9_F_contig88:53328..53495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_004680.1
Exons1
Model size168
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.1151223-CDS-Ecto-sp9_F_contig88:53327..534951622930931.1151223-CDS-Ecto-sp9_F_contig88:53327..53495Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 53328..53495 +
1692278954.2834373-CDS-Ecto-sp9_F_contig88:53327..534951692278954.2834373-CDS-Ecto-sp9_F_contig88:53327..53495Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 53328..53495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig88.16985.1prot_Ecto-sp9_F_contig88.16985.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig88 53328..53495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig88.16985.1

>prot_Ecto-sp9_F_contig88.16985.1 ID=prot_Ecto-sp9_F_contig88.16985.1|Name=mRNA_Ecto-sp9_F_contig88.16985.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=56bp
MACRGSHPARPLVAGAIRLASAVGSALLLLPADGWSVSRAAASGSLLEKS
PTIGK*
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mRNA from alignment at Ecto-sp9_F_contig88:53328..53495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig88.16985.1 ID=mRNA_Ecto-sp9_F_contig88.16985.1|Name=mRNA_Ecto-sp9_F_contig88.16985.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp9_F_contig88:53328..53495+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGTGCCGTGGTAGTCATCCGGCACGCCCCCTAGTTGCGGGAGCTAT
CCGGTTGGCGAGTGCTGTCGGGTCTGCGCTGCTGCTGTTGCCGGCTGACG
GATGGAGCGTATCACGTGCTGCTGCGTCGGGATCGCTCCTTGAGAAGTCT
CCCACCATCGGTAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig88:53328..53495+

>mRNA_Ecto-sp9_F_contig88.16985.1 ID=mRNA_Ecto-sp9_F_contig88.16985.1|Name=mRNA_Ecto-sp9_F_contig88.16985.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp9_F_contig88:53328..53495+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGTGCCGTGGTAGTCATCCGGCACGCCCCCTAGTTGCGGGAGCTAT
CCGGTTGGCGAGTGCTGTCGGGTCTGCGCTGCTGCTGTTGCCGGCTGACG
GATGGAGCGTATCACGTGCTGCTGCGTCGGGATCGCTCCTTGAGAAGTCT
CCCACCATCGGTAAGTGAATGGCGTGCCGTGGTAGTCATCCGGCACGCCC
CCTAGTTGCGGGAGCTATCCGGTTGGCGAGTGCTGTCGGGTCTGCGCTGC
TGCTGTTGCCGGCTGACGGATGGAGCGTATCACGTGCTGCTGCGTCGGGA
TCGCTCCTTGAGAAGTCTCCCACCATCGGTAAGTGA
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