mRNA_Ecto-sp9_F_contig88.16984.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig88.16984.1
Unique NamemRNA_Ecto-sp9_F_contig88.16984.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig88.16984.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU58_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 2.440e-57
Identity = 105/110 (95.45%), Postives = 107/110 (97.27%), Query Frame = 1
Query:    1 SGVSSRATQLFLSNNSLRWLRGVEAFSGVVCLSLSHNLVRRTEDLHLLSLLAHLETLSLEGNPVCGAANYRAHVVSLAPACLKTLDGREVISGETSDAPAIVAAERSATN 330
            SGVSSRAT LFLSNNSLRWLRGVEAFSGVVCLS+SHNLVRRTEDLH LSLLAHLETLSLEGNPVCGAANYRAHVVSLA ACLKTLDGREVISGETSDAPAIVAAERSAT+
Sbjct:   94 SGVSSRATHLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLETLSLEGNPVCGAANYRAHVVSLASACLKTLDGREVISGETSDAPAIVAAERSATS 203          
BLAST of mRNA_Ecto-sp9_F_contig88.16984.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH8_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 5.040e-46
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1
Query:    1 SGVSSRATQLFLSNNSLRWLRGVEAFSGVVCLSLSHNLVRRTEDLHLLSLLAHLETLSLEGNPVCGAANYRAHVVSLAPACLKTLDGREVIS 276
            SGVSSRATQLFLSNNSLRWLRGVEAFSGVVCLS+SHNLVRRTEDLH LSLLAHLE LSLEGNPVCGAANYRAHVVSLA ACLKTLDGRE+++
Sbjct:  100 SGVSSRATQLFLSNNSLRWLRGVEAFSGVVCLSISHNLVRRTEDLHPLSLLAHLEMLSLEGNPVCGAANYRAHVVSLASACLKTLDGREMLA 191          
BLAST of mRNA_Ecto-sp9_F_contig88.16984.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZL8_PHYIT)

HSP 1 Score: 72.0 bits (175), Expect = 3.410e-12
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    7 VSSRATQLFLSNNSLRWLRGVEAFSGVVCLSLSHNLVRRTEDLHLLSLLAHLETLSLEGNPVCGAANYRAHVVSLAPACLKTLDGREVISGETSDAPAIVAAERS 321
            VS+  T L+LS NSLR L G+E FS V  LS+  NL+   +++ +L+ LA L  L+L GNP+C   NYR  ++++    L+ LD  ++   E   AP + A + +
Sbjct:   24 VSASVTALYLSQNSLRSLEGIEQFSAVRLLSVGGNLIASEKEVAILNDLAQLRNLNLMGNPLCDQPNYRLRIIAMLDK-LQVLDNSDITKKERDAAPHVAAQDNA 127          
BLAST of mRNA_Ecto-sp9_F_contig88.16984.1 vs.
Match: Leucine-rich (repeat n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6B0H4_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 2.980e-11
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   22 TQLFLSNNSLRWLRGVEAFSGVVCLSLSHNLVRRTEDLHLLSLLAHLETLSLEGNPVCGAANYRAHVVSLAPACLKTLDGREVISGETSDAPAIVAAERS 321
            T L+LSNN +R L GVE F  +  LSL++N +    +L  LS + +L  L+LEGNPV    +YR+  ++     L  LDG++V   E   A A+V  E S
Sbjct:  103 TTLYLSNNQIRSLTGVEQFLRLETLSLANNRIADLNELRNLSSVPYLRNLNLEGNPVASQPHYRSQAIAHCSTRLAVLDGKQVTDAERKTADAVVRNEAS 202          
BLAST of mRNA_Ecto-sp9_F_contig88.16984.1 vs.
Match: LRRcap (domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXC1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.110e-11
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    7 VSSRATQLFLSNNSLRWLRGVEAFSGVVCLSLSHNLVRRTEDLHLLSLLAHLETLSLEGNPVCGAANYRAHVVSLAPACLKTLDGREVISGETSDAPAIVAAERS 321
            + +  T L+LS N+LR L GVE FS V  LS+  NL+    +L  LS L  L  L+L GNP+C   NYR  VV+L P  L+ LD  +V   E   AP   A + +
Sbjct:   26 ICASVTALYLSQNNLRALEGVEQFSVVRLLSVGGNLIASDTELARLSELRQLRNLNLVGNPLCDQPNYRLRVVALLPK-LQVLDNCDVTKKERDAAPHAAAQDNA 129          
BLAST of mRNA_Ecto-sp9_F_contig88.16984.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y753_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.160e-11
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    1 SGVSSRATQLFLSNNSLRWLRGVEAFSGVVCLSLSHNLVRRTEDLHLLSLLAHLETLSLEGNPVCGAANYRAHVVSLAPACLKTLDGREVISGETSDAPAIVAAERS 321
            S ++  +T L+LS N+L  L G+E F+ +  LSL  NL+ R  +   L  L  L+TL L GNP+C A NYR+ ++ L P  ++TLDG+E+ S E   A   VA + S
Sbjct:   46 SSIARSSTCLYLSQNNLSSLNGLEQFTNMKVLSLGGNLIIRFHEFDRLRELP-LKTLYLVGNPICDAPNYRSRIIHLLPH-IQTLDGQEITSKERQIASFHVAQDES 150          
BLAST of mRNA_Ecto-sp9_F_contig88.16984.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VPC9_DUNTE)

HSP 1 Score: 68.2 bits (165), Expect = 5.150e-11
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   19 ATQLFLSNNSLRWLRGVEAFSGVVCLSLSHNLVRRTED-LHLLSLLAHLETLSLEGNPVCGAANYRAHVVSLAPACLKTLDGREV 270
            AT+LFLSNNSL  L+G++ F  V  L+L+HNL+   E+ L  L  L  LE L+LEGNP     +YRAHV++  P  L+ LD  EV
Sbjct:   65 ATKLFLSNNSLTSLQGIQQFKNVQVLTLAHNLLGNLEEVLECLEDLRCLEVLTLEGNPCSELPHYRAHVIASLPG-LRVLDTFEV 148          
BLAST of mRNA_Ecto-sp9_F_contig88.16984.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DED1_PHYNI)

HSP 1 Score: 67.8 bits (164), Expect = 9.570e-11
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    7 VSSRATQLFLSNNSLRWLRGVEAFSGVVCLSLSHNLVRRTEDLHLLSLLAHLETLSLEGNPVCGAANYRAHVVSLAPACLKTLDGREVISGETSDAPAIVAAE 315
            VS+  T L+LS N+LR L+G+E F  V  LS+  NL+   +++  L+ LA L  L+L GNP+C   NYR  V+++    L+ LD  ++   E   AP + A +
Sbjct:   95 VSASVTALYLSQNNLRSLKGIEQFPAVRLLSVGGNLISSDKEVARLNELAQLRNLNLMGNPLCDQPNYRLRVIAVLTK-LQVLDNSDITKKERHAAPHVAAQD 196          
BLAST of mRNA_Ecto-sp9_F_contig88.16984.1 vs.
Match: uncharacterized (protein LOC109721234 isoform X4 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5G6T3_ANACO)

HSP 1 Score: 67.8 bits (164), Expect = 1.010e-10
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 SGVSSRATQLFLSNNSLRWLRGVEAFSGVVCLSLSHNLVRRTEDLHLLSLLAHLETLSLEGNPVCGAANYRAHVVSLAPACLKT-LDGREVISGETSDAPAIVAAER 318
            S  SSR  +L L NN+L  L G+E    +  L LS+N++    +L +L+ L+ L++L LEGNP+C A  YRAHV S  P   K  LD + + +GE  +   I++A +
Sbjct:  233 SEASSRIVKLVLRNNALTTLHGIENLKSLEGLDLSYNIISSFVELEILANLSRLQSLWLEGNPICYARWYRAHVFSFFPHPEKLKLDEKGISTGEYWERHVIISASK 339          
BLAST of mRNA_Ecto-sp9_F_contig88.16984.1 vs.
Match: Serine/threonine-protein (kinase 11-interacting protein n=6 Tax=Ananas comosus TaxID=4615 RepID=A0A199W3U2_ANACO)

HSP 1 Score: 67.8 bits (164), Expect = 1.020e-10
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    1 SGVSSRATQLFLSNNSLRWLRGVEAFSGVVCLSLSHNLVRRTEDLHLLSLLAHLETLSLEGNPVCGAANYRAHVVSLAPACLKT-LDGREVISGETSDAPAIVAAER 318
            S  SSR  +L L NN+L  L G+E    +  L LS+N++    +L +L+ L+ L++L LEGNP+C A  YRAHV S  P   K  LD + + +GE  +   I++A +
Sbjct:  233 SEASSRIVKLVLRNNALTTLHGIENLKSLEGLDLSYNIISSFVELEILANLSRLQSLWLEGNPICYARWYRAHVFSFFPHPEKLKLDEKGISTGEYWERHVIISASK 339          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig88.16984.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.440e-5795.45protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.040e-4692.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.410e-1238.10protein n=3 Tax=Phytophthora infestans TaxID=4787 ... [more]
Leucine-rich2.980e-1140.00repeat n=1 Tax=Carpediemonas membranifera TaxID=20... [more]
LRRcap4.110e-1141.90domain-containing protein n=1 Tax=Phytophthora meg... [more]
Uncharacterized4.160e-1141.12protein n=1 Tax=Thraustotheca clavata TaxID=74557 ... [more]
Hypothetical5.150e-1149.41protein (Fragment) n=1 Tax=Dunaliella tertiolecta ... [more]
Uncharacterized9.570e-1137.86protein n=1 Tax=Phytophthora nicotianae TaxID=4790... [more]
uncharacterized1.010e-1039.25protein LOC109721234 isoform X4 n=2 Tax=Ananas com... [more]
Serine/threonine-protein1.020e-1039.25kinase 11-interacting protein n=6 Tax=Ananas comos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig88contigEcto-sp9_F_contig88:38904..39642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue1.7e-39
Seed eggNOG ortholog2880.D8LLH8
Preferred nameLRRC72
KEGG koko:K18626
EggNOG free text desc.norepinephrine secretion
EggNOG OGsKOG1859@1,KOG1859@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.0479252-CDS-Ecto-sp9_F_contig88:38903..391701622930931.0479252-CDS-Ecto-sp9_F_contig88:38903..39170Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 38904..39170 +
1692278954.2598124-CDS-Ecto-sp9_F_contig88:38903..391701692278954.2598124-CDS-Ecto-sp9_F_contig88:38903..39170Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 38904..39170 +
1622930931.0715494-CDS-Ecto-sp9_F_contig88:39539..396411622930931.0715494-CDS-Ecto-sp9_F_contig88:39539..39641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 39540..39641 +
1692278954.272506-CDS-Ecto-sp9_F_contig88:39539..396411692278954.272506-CDS-Ecto-sp9_F_contig88:39539..39641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 39540..39641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig88.16984.1prot_Ecto-sp9_F_contig88.16984.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig88 38904..39641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig88.16984.1

>prot_Ecto-sp9_F_contig88.16984.1 ID=prot_Ecto-sp9_F_contig88.16984.1|Name=mRNA_Ecto-sp9_F_contig88.16984.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=123bp
SGVSSRATQLFLSNNSLRWLRGVEAFSGVVCLSLSHNLVRRTEDLHLLSL
LAHLETLSLEGNPVCGAANYRAHVVSLAPACLKTLDGREVISGETSDAPA
IVAAERSATNKTSTECCLCLLLH
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mRNA from alignment at Ecto-sp9_F_contig88:38904..39642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig88.16984.1 ID=mRNA_Ecto-sp9_F_contig88.16984.1|Name=mRNA_Ecto-sp9_F_contig88.16984.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=739bp|location=Sequence derived from alignment at Ecto-sp9_F_contig88:38904..39642+ (Ectocarpus species9 EcSCA_722f female)
TCCGGCGTGTCCTCCCGAGCGACCCAGCTTTTCCTCAGCAACAACAGTCT GCGCTGGTTACGAGGCGTTGAAGCCTTTTCGGGCGTGGTCTGCCTCTCCC TCTCACACAACCTTGTGCGCCGGACGGAGGACCTCCACCTCCTCTCGCTT TTGGCTCACCTGGAGACGTTATCGCTGGAGGGCAACCCCGTGTGCGGTGC GGCCAACTACCGGGCGCATGTGGTCTCGCTTGCACCCGCGTGCCTCAAGA CGCTGGACGGTAGAGAGGTCAGAGACATTACTGTGTGTGCTTGACGATAT GGCGATATCGCGATGTTGGTCGACTTTAACTTGGGTGGCGGGCTTGTTTT GCTTTTGGTCCGGAGCCTTTGGTTCCCTTTATTTTACGTCGAGGTGCTCG ATCGTCCAGAGGTAGGTCCGAAGAGTGAGTAAAGTGCGACGCGGAGTTCC TGGGTGTTTGTGTAGTTTTTGGCTCCTACTCGTTTGATTTTCCTCTGACG ATTACCGGCTGTGGGTGTTCGCAACCCTGATGGCGAAACACAAGCGTGCT GGTGCCCTCTCTTTCCCCCCTCAGCCCGTTCCTCTCTTGATCATTCCAGC GCAACAATCACGTTTCTGCACTGTACGATATTCTAGGTCATTTCTGGGGA AACGTCCGATGCTCCAGCCATCGTCGCTGCCGAAAGGTCCGCGACAAATA AAACGTCGACAGAGTGCTGTCTCTGCCTGCTTCTTCACC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig88:38904..39642+

>mRNA_Ecto-sp9_F_contig88.16984.1 ID=mRNA_Ecto-sp9_F_contig88.16984.1|Name=mRNA_Ecto-sp9_F_contig88.16984.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp9_F_contig88:38904..39642+ (Ectocarpus species9 EcSCA_722f female)
TCCGGCGTGTCCTCCCGAGCGACCCAGCTTTTCCTCAGCAACAACAGTCT
GCGCTGGTTACGAGGCGTTGAAGCCTTTTCGGGCGTGGTCTGCCTCTCCC
TCTCACACAACCTTGTGCGCCGGACGGAGGACCTCCACCTCCTCTCGCTT
TTGGCTCACCTGGAGACGTTATCGCTGGAGGGCAACCCCGTGTGCGGTGC
GGCCAACTACCGGGCGCATGTGGTCTCGCTTGCACCCGCGTGCCTCAAGA
CGCTGGACGGTAGAGAGTCCGGCGTGTCCTCCCGAGCGACCCAGCTTTTC
CTCAGCAACAACAGTCTGCGCTGGTTACGAGGCGTTGAAGCCTTTTCGGG
CGTGGTCTGCCTCTCCCTCTCACACAACCTTGTGCGCCGGACGGAGGACC
TCCACCTCCTCTCGCTTTTGGCTCACCTGGAGACGTTATCGCTGGAGGGC
AACCCCGTGTGCGGTGCGGCCAACTACCGGGCGCATGTGGTCTCGCTTGC
ACCCGCGTGCCTCAAGACGCTGGACGGTAGAGAGGTCATTTCTGGGGAAA
CGTCCGATGCTCCAGCCATCGTCGCTGCCGAAAGGTCCGCGACAAATAAA
ACGTCGACAGAGTGCTGTCTCTGCCTGCTTCTTCACGTCATTTCTGGGGA
AACGTCCGATGCTCCAGCCATCGTCGCTGCCGAAAGGTCCGCGACAAATA
AAACGTCGACAGAGTGCTGTCTCTGCCTGCTTCTTCAC
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