mRNA_Ecto-sp9_F_contig88.16982.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig88.16982.1
Unique NamemRNA_Ecto-sp9_F_contig88.16982.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig88.16982.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU58_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.090e-12
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:  320 VVAATGTSAVNRWQHWGSTTAAAEEEGGQGAEEEAVGQEDHQKGV 454
            VVAATGTSA+NRW+HWGSTTA A EEGGQGAEEEAVGQED++K V
Sbjct:    2 VVAATGTSAMNRWKHWGSTTAGAGEEGGQGAEEEAVGQEDYEKAV 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig88.16982.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.090e-1284.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig88contigEcto-sp9_F_contig88:38001..38465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size467
Cds size465
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.576597-CDS-Ecto-sp9_F_contig88:38000..384651622930929.576597-CDS-Ecto-sp9_F_contig88:38000..38465Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 38001..38465 +
1692278953.5519562-CDS-Ecto-sp9_F_contig88:38000..384651692278953.5519562-CDS-Ecto-sp9_F_contig88:38000..38465Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig88 38001..38465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig88.16982.1prot_Ecto-sp9_F_contig88.16982.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig88 38001..38465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig88.16982.1

>prot_Ecto-sp9_F_contig88.16982.1 ID=prot_Ecto-sp9_F_contig88.16982.1|Name=mRNA_Ecto-sp9_F_contig88.16982.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=155bp
MVDGEDLLRLKSADAVGRRGSATYNDTRYLASASLDLHHRHGAKLSTRSA
GGQQQHHQHRNDRGKGGGHALSAQESSTLFWEEVDSLDAKSSSANNDWGQ
RLGGGRGRGGDRNIGGESMATLGVHNGRSRRGGRSGRGGRGSGARGPPKR
GVRQA
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mRNA from alignment at Ecto-sp9_F_contig88:38001..38465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig88.16982.1 ID=mRNA_Ecto-sp9_F_contig88.16982.1|Name=mRNA_Ecto-sp9_F_contig88.16982.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=465bp|location=Sequence derived from alignment at Ecto-sp9_F_contig88:38001..38465+ (Ectocarpus species9 EcSCA_722f female)
ATGGTCGATGGGGAAGATCTCTTGCGGCTAAAGAGCGCCGATGCGGTAGG
ACGCAGAGGTAGCGCTACCTACAATGACACCAGGTACCTGGCTTCCGCGT
CGCTTGACCTTCACCACCGCCATGGAGCAAAGTTGTCAACGCGCTCCGCT
GGTGGACAGCAGCAGCACCACCAGCACCGCAACGACCGAGGTAAGGGTGG
TGGACATGCCCTGAGCGCCCAGGAATCAAGCACACTCTTCTGGGAGGAAG
TTGATTCTCTGGACGCCAAAAGTAGTAGCGCGAACAACGATTGGGGGCAA
AGGCTTGGCGGCGGTCGCGGTCGTGGCGGCGACCGGAACATCGGCGGTGA
ATCGATGGCAACACTGGGGGTCCACAACGGCCGCAGCCGAAGAGGAGGGC
GGTCAGGGCGCGGAGGAAGAGGCAGTGGGGCAAGAGGACCACCAAAAAGG
GGTGTTCGCCAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig88:38001..38465+

>mRNA_Ecto-sp9_F_contig88.16982.1 ID=mRNA_Ecto-sp9_F_contig88.16982.1|Name=mRNA_Ecto-sp9_F_contig88.16982.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp9_F_contig88:38001..38465+ (Ectocarpus species9 EcSCA_722f female)
ATGGTCGATGGGGAAGATCTCTTGCGGCTAAAGAGCGCCGATGCGGTAGG
ACGCAGAGGTAGCGCTACCTACAATGACACCAGGTACCTGGCTTCCGCGT
CGCTTGACCTTCACCACCGCCATGGAGCAAAGTTGTCAACGCGCTCCGCT
GGTGGACAGCAGCAGCACCACCAGCACCGCAACGACCGAGGTAAGGGTGG
TGGACATGCCCTGAGCGCCCAGGAATCAAGCACACTCTTCTGGGAGGAAG
TTGATTCTCTGGACGCCAAAAGTAGTAGCGCGAACAACGATTGGGGGCAA
AGGCTTGGCGGCGGTCGCGGTCGTGGCGGCGACCGGAACATCGGCGGTGA
ATCGATGGCAACACTGGGGGTCCACAACGGCCGCAGCCGAAGAGGAGGGC
GGTCAGGGCGCGGAGGAAGAGGCAGTGGGGCAAGAGGACCACCAAAAAGG
GGTGTTCGCCAGGCGATGGTCGATGGGGAAGATCTCTTGCGGCTAAAGAG
CGCCGATGCGGTAGGACGCAGAGGTAGCGCTACCTACAATGACACCAGGT
ACCTGGCTTCCGCGTCGCTTGACCTTCACCACCGCCATGGAGCAAAGTTG
TCAACGCGCTCCGCTGGTGGACAGCAGCAGCACCACCAGCACCGCAACGA
CCGAGGTAAGGGTGGTGGACATGCCCTGAGCGCCCAGGAATCAAGCACAC
TCTTCTGGGAGGAAGTTGATTCTCTGGACGCCAAAAGTAGTAGCGCGAAC
AACGATTGGGGGCAAAGGCTTGGCGGCGGTCGCGGTCGTGGCGGCGACCG
GAACATCGGCGGTGAATCGATGGCAACACTGGGGGTCCACAACGGCCGCA
GCCGAAGAGGAGGGCGGTCAGGGCGCGGAGGAAGAGGCAGTGGGGCAAGA
GGACCACCAAAAAGGGGTGTTCGCCAGGCG
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