mRNA_Ecto-sp9_F_contig8729.16914.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8729.16914.1
Unique NamemRNA_Ecto-sp9_F_contig8729.16914.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8729.16914.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z303_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.830e-21
Identity = 69/178 (38.76%), Postives = 93/178 (52.25%), Query Frame = 1 
Query:  301 HTIEGQIRRKKQENRVHKKLTEWGYIVDCETTINAISGKCLVDTQRHFSRLDFRIVNCVNAICILEVDEDHHYWYNLSCEVSRMADVRASPVLAGYTLPIHWIRYSPYGKYRVGSKEIKNLRTTREQVLKDHLDKICSPDFTPEKQENIHYLFYDLVSKKEGPEVMRDPDFPDERIDT 834
            HT EG  R+ KQ+ RV   L E GY VD E TI    G C+ D  RH +RLD  IV   + I I+EVDE+ H  Y +SCE++RM  V  + +  GYT+P+ ++RY+P G        IK  R  RE VL + L ++       ++  N+ YL Y        P V  D DF +  I T
Sbjct:  342 HTKEGAKRQLKQQMRVANLLKEAGYTVDEECTIQY--GGCVPDPDRHRARLDIYIVTITSCILIVEVDEEAHASYLVSCELTRMLQVHEAILSRGYTVPVVFVRYNPNGCITKDGVCIKMTREEREVVLLEFLGRVRDGQQVFQEPLNLVYLCYPTTYGL--PTVCEDTDFDEGMIGT 515
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BLAST of mRNA_Ecto-sp9_F_contig8729.16914.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ85_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.360e-21
Identity = 65/178 (36.52%), Postives = 93/178 (52.25%), Query Frame = 1 
Query:  301 HTIEGQIRRKKQENRVHKKLTEWGYIVDCETTINAISGKCLVDTQRHFSRLDFRIVNCVNAICILEVDEDHHYWYNLSCEVSRMADVRASPVLAGYTLPIHWIRYSPYGKYRVGSKEIKNLRTTREQVLKDHLDKICSPDFTPEKQENIHYLFYDLVSKKEGPEVMRDPDFPDERIDT 834
            H+ EG  R+ KQ+ RV K L E GY VD E TI      C+ D  RH +RLD  +V   + I I+EVDE+ H  Y +SCE++RM  +  + +  GYT+P+ ++RYSP G         +  R  RE  L + L ++ +     E+  N+ YL Y   +    P V  DP F +  I T
Sbjct:  242 HSKEGAKRQLKQQMRVVKVLKEAGYTVDEECTIQYTG--CVPDPDRHHARLDVYVVTITSCILIVEVDEEAHASYLVSCEITRMLQMHEAILTRGYTVPVVFVRYSPNGAITRDGVYFEMTRKEREVALLEFLGRVRAGQQVFEEPLNLVYLCYPTANGL--PTVCEDPHFDEGMIGT 415
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BLAST of mRNA_Ecto-sp9_F_contig8729.16914.1 vs.
Match: Putative (C2H2-type Zinc finger protein n=1 Tax=Emiliania huxleyi virus 99B1 TaxID=187397 RepID=D2TFC0_9PHYC)

HSP 1 Score: 65.5 bits (158), Expect = 1.990e-8
Identity = 55/184 (29.89%), Postives = 89/184 (48.37%), Query Frame = 1 
Query:  322 RRKKQENRVHKKLTEWGYI--------------VDCETTINAISGKCLVDTQRHFSRLDFRIVNCVNAICILEVDEDHH---YWYNLSCEVSRMADVRASPVLAGYTLP-IHWIRYSPYGKYRVGSKEIKNLRTTREQVLKDHLDKICSPDFTPEKQENIHYLFYDLVSKKEGPEVMRDPDFPD 819
            RRK QE +V+K LTE GY+                 E  IN   G     +   F  +DF I+N       LEVDE+ H   Y   LSC+  RM DV+A+ + +   +P I+W+RY+P   +    + I+     R++ L + ++++      P +   I Y+FYD+V  +   EV+ + ++ D
Sbjct:  221 RRKIQEEKVNKLLTESGYVQLYNLGDALPPPGNYKREHKINFDCGSNNKQSSHCF--IDF-IINSNGTYIFLEVDENQHRFGYDAMLSCDCKRMTDVQATVIQSDDRIPPIYWLRYNPQA-WHCNEETIRVPTEVRQRFLMERINEV-----QPSESIRIEYMFYDIVDDE--LEVITNEEYAD 393
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BLAST of mRNA_Ecto-sp9_F_contig8729.16914.1 vs.
Match: Uncharacterized (protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LX24_9ZZZZ)

HSP 1 Score: 65.5 bits (158), Expect = 2.120e-8
Identity = 60/209 (28.71%), Postives = 98/209 (46.89%), Query Frame = 1 
Query:  250 CKRSFAQSNQLTMHKKT-HTIEGQIRRKKQENRVHKKLTEWGYI--------------VDCETTINAISGKCLVDTQRHFSRLDFRIVNCVNAICILEVDEDHH---YWYNLSCEVSRMADVRASPVLAGYTLP-IHWIRYSPYGKYRVGSKEIKNLRTTREQVLKDHLDKICSPDFTPEKQENIHYLFYDLVSKKEGPEVMRDPDFPD 819
            C+ + A  + L  H +  H  +   RRK QE +V+K LTE GY+                 E  IN   G     +   F  +DF I+N       LEVDE+ H   Y   LSC+  RM DV+A+ + +   +P I+W+RY+P   +    + I+     R + L + ++++      P +   I Y+FYD+V  +   EV+ + ++ D
Sbjct:  228 CEYASASKSTLNDHIRVRHNDQYIARRKIQEEKVNKLLTESGYVQLYTLGDALPPPGHYKREHKINFDCGSNNKQSSHCF--IDF-IINSNGTYIFLEVDENQHRFGYDAMLSCDCKRMTDVQATVIQSDDRIPPIYWLRYNPQA-WHCNEETIRVPTEVRHRFLMERINEV-----QPSESIRIEYMFYDIVDDE--LEVITNEEYAD 425
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8729.16914.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.830e-2138.76protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized3.360e-2136.52protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Putative1.990e-829.89C2H2-type Zinc finger protein n=1 Tax=Emiliania hu... [more]
Uncharacterized2.120e-828.71protein n=1 Tax=viral metagenome TaxID=1070528 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8729contigEcto-sp9_F_contig8729:4114..4962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size849
Cds size849
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.1640637-CDS-Ecto-sp9_F_contig8729:4113..49621622930920.1640637-CDS-Ecto-sp9_F_contig8729:4113..4962Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8729 4114..4962 +
1692278949.1062856-CDS-Ecto-sp9_F_contig8729:4113..49621692278949.1062856-CDS-Ecto-sp9_F_contig8729:4113..4962Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8729 4114..4962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8729.16914.1prot_Ecto-sp9_F_contig8729.16914.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8729 4114..4962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8729.16914.1

>prot_Ecto-sp9_F_contig8729.16914.1 ID=prot_Ecto-sp9_F_contig8729.16914.1|Name=mRNA_Ecto-sp9_F_contig8729.16914.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=283bp
CHNPFDTEYGLAVHIETHFACPVDGCPYTTRRPDHMARHVRRHRGDRPFS
CDTCPYAAFTKEEIVVHKRTHSDKKSFVCHLEWCKRSFAQSNQLTMHKKT
HTIEGQIRRKKQENRVHKKLTEWGYIVDCETTINAISGKCLVDTQRHFSR
LDFRIVNCVNAICILEVDEDHHYWYNLSCEVSRMADVRASPVLAGYTLPI
HWIRYSPYGKYRVGSKEIKNLRTTREQVLKDHLDKICSPDFTPEKQENIH
YLFYDLVSKKEGPEVMRDPDFPDERIDTTNVGE
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mRNA from alignment at Ecto-sp9_F_contig8729:4114..4962+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8729.16914.1 ID=mRNA_Ecto-sp9_F_contig8729.16914.1|Name=mRNA_Ecto-sp9_F_contig8729.16914.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=849bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8729:4114..4962+ (Ectocarpus species9 EcSCA_722f female)
TGTCACAATCCTTTTGACACAGAGTACGGCCTCGCGGTACACATAGAGAC
ACATTTTGCGTGTCCTGTCGATGGATGCCCTTACACAACTCGACGCCCTG
ACCACATGGCACGACATGTGAGAAGGCATCGGGGTGACAGACCGTTTTCA
TGTGACACTTGTCCATACGCGGCTTTCACGAAAGAGGAAATAGTGGTACA
TAAGAGGACGCATTCGGACAAAAAGTCATTTGTGTGTCATTTGGAGTGGT
GCAAACGGTCATTCGCACAATCGAATCAACTGACGATGCACAAGAAAACC
CACACCATCGAGGGTCAGATTCGTCGCAAGAAGCAAGAGAACCGGGTGCA
CAAGAAGCTGACGGAATGGGGCTACATTGTCGACTGCGAGACAACCATCA
ATGCCATCTCAGGTAAATGTCTAGTGGACACTCAACGGCATTTCTCCAGA
CTCGACTTTAGAATCGTCAACTGTGTCAACGCTATCTGTATTCTTGAGGT
GGACGAGGATCACCACTACTGGTACAATCTGTCATGTGAAGTGAGCCGAA
TGGCGGACGTGAGGGCATCACCAGTACTTGCTGGGTACACGCTACCCATC
CACTGGATTCGCTACAGCCCATATGGAAAGTATAGGGTCGGGTCAAAGGA
GATAAAAAATCTGCGGACAACACGGGAACAGGTGCTGAAGGACCATCTCG
ACAAAATCTGTTCGCCGGACTTTACGCCGGAAAAGCAAGAGAACATCCAC
TATTTGTTCTACGATTTGGTGTCTAAGAAAGAAGGCCCCGAGGTCATGCG
CGACCCGGACTTTCCGGATGAACGCATTGATACTACAAACGTAGGAGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8729:4114..4962+

>mRNA_Ecto-sp9_F_contig8729.16914.1 ID=mRNA_Ecto-sp9_F_contig8729.16914.1|Name=mRNA_Ecto-sp9_F_contig8729.16914.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1698bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8729:4114..4962+ (Ectocarpus species9 EcSCA_722f female)
TGTCACAATCCTTTTGACACAGAGTACGGCCTCGCGGTACACATAGAGAC
ACATTTTGCGTGTCCTGTCGATGGATGCCCTTACACAACTCGACGCCCTG
ACCACATGGCACGACATGTGAGAAGGCATCGGGGTGACAGACCGTTTTCA
TGTGACACTTGTCCATACGCGGCTTTCACGAAAGAGGAAATAGTGGTACA
TAAGAGGACGCATTCGGACAAAAAGTCATTTGTGTGTCATTTGGAGTGGT
GCAAACGGTCATTCGCACAATCGAATCAACTGACGATGCACAAGAAAACC
CACACCATCGAGGGTCAGATTCGTCGCAAGAAGCAAGAGAACCGGGTGCA
CAAGAAGCTGACGGAATGGGGCTACATTGTCGACTGCGAGACAACCATCA
ATGCCATCTCAGGTAAATGTCTAGTGGACACTCAACGGCATTTCTCCAGA
CTCGACTTTAGAATCGTCAACTGTGTCAACGCTATCTGTATTCTTGAGGT
GGACGAGGATCACCACTACTGGTACAATCTGTCATGTGAAGTGAGCCGAA
TGGCGGACGTGAGGGCATCACCAGTACTTGCTGGGTACACGCTACCCATC
CACTGGATTCGCTACAGCCCATATGGAAAGTATAGGGTCGGGTCAAAGGA
GATAAAAAATCTGCGGACAACACGGGAACAGGTGCTGAAGGACCATCTCG
ACAAAATCTGTTCGCCGGACTTTACGCCGGAAAAGCAAGAGAACATCCAC
TATTTGTTCTACGATTTGGTGTCTAAGAAAGAAGGCCCCGAGGTCATGCG
CGACCCGGACTTTCCGGATGAACGCATTGATACTACAAACGTAGGAGAGT
GTCACAATCCTTTTGACACAGAGTACGGCCTCGCGGTACACATAGAGACA
CATTTTGCGTGTCCTGTCGATGGATGCCCTTACACAACTCGACGCCCTGA
CCACATGGCACGACATGTGAGAAGGCATCGGGGTGACAGACCGTTTTCAT
GTGACACTTGTCCATACGCGGCTTTCACGAAAGAGGAAATAGTGGTACAT
AAGAGGACGCATTCGGACAAAAAGTCATTTGTGTGTCATTTGGAGTGGTG
CAAACGGTCATTCGCACAATCGAATCAACTGACGATGCACAAGAAAACCC
ACACCATCGAGGGTCAGATTCGTCGCAAGAAGCAAGAGAACCGGGTGCAC
AAGAAGCTGACGGAATGGGGCTACATTGTCGACTGCGAGACAACCATCAA
TGCCATCTCAGGTAAATGTCTAGTGGACACTCAACGGCATTTCTCCAGAC
TCGACTTTAGAATCGTCAACTGTGTCAACGCTATCTGTATTCTTGAGGTG
GACGAGGATCACCACTACTGGTACAATCTGTCATGTGAAGTGAGCCGAAT
GGCGGACGTGAGGGCATCACCAGTACTTGCTGGGTACACGCTACCCATCC
ACTGGATTCGCTACAGCCCATATGGAAAGTATAGGGTCGGGTCAAAGGAG
ATAAAAAATCTGCGGACAACACGGGAACAGGTGCTGAAGGACCATCTCGA
CAAAATCTGTTCGCCGGACTTTACGCCGGAAAAGCAAGAGAACATCCACT
ATTTGTTCTACGATTTGGTGTCTAAGAAAGAAGGCCCCGAGGTCATGCGC
GACCCGGACTTTCCGGATGAACGCATTGATACTACAAACGTAGGAGAG
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