mRNA_Ecto-sp9_F_contig872.16906.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig872.16906.1
Unique NamemRNA_Ecto-sp9_F_contig872.16906.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.230e-68
Identity = 119/135 (88.15%), Postives = 119/135 (88.15%), Query Frame = 1
Query:    7 PCPTRTRASRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYK----------FWYRCPICRKSMEDMREYFSQM 381
            PC  R  A RYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXX VSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYK          FWYRCPICRKSMEDMREYFSQM
Sbjct:  911 PCTGRKMA-RYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXCVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKEYIGRAESREFWYRCPICRKSMEDMREYFSQM 1044          
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Zinc (ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z4_9STRA)

HSP 1 Score: 171 bits (434), Expect = 8.990e-51
Identity = 85/138 (61.59%), Postives = 100/138 (72.46%), Query Frame = 1
Query:   10 CPTRTRA---SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSM-NAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYK----------FWYRCPICRKSMEDMREYFSQM 381
            CP+ +     SRYYC ICHL DD   KDIYHCPYCNVCRLGKGLGVDY  XXXXX  V++ +A +H C++ SLES+CPIC+  +F ST QVKGLRCGHF+HL CY+           WYRCPIC +SMEDM EYF Q+
Sbjct:   64 CPSNSSTATLSRYYCAICHLHDDDASKDIYHCPYCNVCRLGKGLGVDYCHXXXXXACVTVESADTHRCVTHSLESNCPICSTGMFESTQQVKGLRCGHFLHLNCYREYVRHAEEQAHWYRCPICLRSMEDMTEYFGQL 201          
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ29_HETAK)

HSP 1 Score: 171 bits (432), Expect = 1.610e-50
Identity = 75/127 (59.06%), Postives = 90/127 (70.87%), Query Frame = 1
Query:   31 SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYK----------FWYRCPICRKSMEDMREYFSQM 381
            SRYYC IC LFDDAP K IYHCPYCN+CRLG+GLG D+         V+++A  H CL K+LE DCPIC+  LF ST + KGLRCGH +HL CY+          FW+RCP+CRKSM+DM EYFSQ+
Sbjct:   67 SRYYCAICKLFDDAPGKAIYHCPYCNLCRLGRGLGRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 193          
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIX4_CYCTE)

HSP 1 Score: 155 bits (391), Expect = 1.010e-43
Identity = 64/124 (51.61%), Postives = 88/124 (70.97%), Query Frame = 1
Query:   25 RASRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW-----YRCPICRKSMEDMREYFSQM 381
            R ++YYC ICHL+DD PEK IYHCP+CNVCR G+GLG+DY         VS+    H C+ + L++ CPIC+ S+F ST  +KGL+CGH +HL+C+  +     Y CP+C+KS+EDMREYF+ +
Sbjct:  147 RFAKYYCQICHLYDDDPEKQIYHCPFCNVCRSGRGLGIDYRHCMRCNACVSLEDTDHHCIPQRLQATCPICHESMFQSTEPLKGLKCGHVLHLSCFTRYMRGQSYTCPLCKKSVEDMREYFTML 270          
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R513_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.590e-42
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query:   31 SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW-----YRCPICRKSMEDMREYFS 375
            S+Y C IC+L+DD P K+IYHCP+CNVCR GKGLGVDY         VS+   +H C+ +SL+ +CPIC+ S+F ST  ++GL+CGH MHL+C+  +     Y CP+C+KS+EDM++YF+
Sbjct:  100 SKYSCNICNLYDDGPNKNIYHCPFCNVCRSGKGLGVDYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCFTMYMRAQSYTCPLCKKSIEDMKDYFA 219          
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJY0_9RHOD)

HSP 1 Score: 154 bits (390), Expect = 1.990e-41
Identity = 79/132 (59.85%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    4 SPCPTRTRASRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSM-NAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW----YRCPICRKSMEDMREYFSQMV 384
            S C    R +RY C IC L+DDAP +DIYHC YCNVCR+GKGLG+DYXXXXXXXXX+S  NA +H C+  SLESDCP+C   LFTST+ +K LRCGH MH +CY+ +    YRCP+C+KS+ DM  YF   +
Sbjct:  462 SCCSCHERFARYVCLICKLYDDAPNRDIYHCGYCNVCRVGKGLGIDYXXXXXXXXXMSTANAKNHRCVEHSLESDCPVCGEYLFTSTNPIKFLRCGHLMHASCYRRYASTDYRCPVCKKSLADMSAYFEAQL 593          
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SMK8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.000e-41
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query:   31 SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW-----YRCPICRKSMEDMREYFS 375
            S+Y C IC+L+DD P K+IYHCP+CNVCR GKGLGVDY         VS+   +H C+ +SL+ +CPIC+ S+F ST  ++GL+CGH MHL+C+  +     Y CP+C+KS+EDM++YF+
Sbjct:  230 SKYSCNICNLYDDGPNKNIYHCPFCNVCRSGKGLGVDYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCFTMYMRAQSYTCPLCKKSIEDMKDYFA 349          
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAG1_9STRA)

HSP 1 Score: 146 bits (368), Expect = 7.600e-40
Identity = 67/134 (50.00%), Postives = 92/134 (68.66%), Query Frame = 1
Query:   19 RTRA--SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMN-APSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYK----FWYRCPICRKSMEDMREYFSQMVSGRSH 399
            RT A   +YYC +C L+D++ +++IYHCPYCNVCR+GKGLGVDY         V M    +H C+S+ LE +CPIC ++L  ST+ +KGL CGH MHL CY+    + Y CPIC K+M+DMR+YFS++    +H
Sbjct:  178 RTHAVLGKYYCNVCKLWDNSLDREIYHCPYCNVCRVGKGLGVDYRHCMRCNCCVEMREGVTHRCISQVLEGNCPICADTLRFSTADLKGLPCGHTMHLECYRQYRAYSYTCPICLKTMDDMRDYFSRLDQAAAH 311          
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Zinc (finger protein-like protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S0H4_9CHLO)

HSP 1 Score: 150 bits (379), Expect = 1.520e-39
Identity = 75/125 (60.00%), Postives = 96/125 (76.80%), Query Frame = 1
Query:   22 TRASRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNA-PSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW----YRCPICRKSMEDMREYFSQM 381
            TR ++YYCGICHLFDDAP++DIYHCP CNVCR GKGLG+D+XXXXXXXXX+S++    HTC  +SLE++C +C+  LF S + +K L CGHFMH +C++ +    Y CPIC KSM DMR YF  +
Sbjct:  666 TRMAKYYCGICHLFDDAPDRDIYHCPSCNVCRRGKGLGIDFXXXXXXXXXMSISLFKKHTCRERSLEANCAVCHEYLFDSPTPIKELPCGHFMHSSCFQMYTHYNYTCPICSKSMGDMRVYFQML 790          
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VUG9_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.700e-39
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query:   31 SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW-----YRCPICRKSMEDMREYFS 375
            S+Y C IC+L+DD P K+IYHCP+CNVCR GKGLGVDY         VS+   +H C+ +SL+ +CPIC+ S+F ST  ++GL+CGH MHL+C+  +     Y CP+C+KS+EDM++YF+
Sbjct:  967 SKYSCNICNLYDDGPNKNIYHCPFCNVCRSGKGLGVDYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCFTMYMRAQSYTCPLCKKSIEDMKDYFA 1086          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.230e-6888.15protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Zinc8.990e-5161.59ion binding protein n=1 Tax=Tribonema minus TaxID=... [more]
Hypothetical1.610e-5059.06protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical1.010e-4351.61protein n=1 Tax=Cyclophora tenuis TaxID=216820 Rep... [more]
Hypothetical1.590e-4251.67protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Uncharacterized1.990e-4159.85protein n=1 Tax=Cyanidiococcus yangmingshanensis T... [more]
Hypothetical3.000e-4151.67protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical7.600e-4050.00protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Zinc1.520e-3960.00finger protein-like protein n=1 Tax=Tetraselmis sp... [more]
Hypothetical1.700e-3951.67protein n=3 Tax=Ditylum brightwellii TaxID=49249 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig872contigEcto-sp9_F_contig872:26744..28230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.0
Seed ortholog evalue8.1e-59
Seed eggNOG ortholog2880.D7FUX1
KEGG koko:K16276
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG1940@1,KOG1940@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size405
Cds size405
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig872.16906.1prot_Ecto-sp9_F_contig872.16906.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig872 26744..28230 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.6936324-CDS-Ecto-sp9_F_contig872:26743..268331622930918.6936324-CDS-Ecto-sp9_F_contig872:26743..26833Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 26744..26833 -
1692278948.7092712-CDS-Ecto-sp9_F_contig872:26743..268331692278948.7092712-CDS-Ecto-sp9_F_contig872:26743..26833Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 26744..26833 -
1622930918.7181537-CDS-Ecto-sp9_F_contig872:27176..273531622930918.7181537-CDS-Ecto-sp9_F_contig872:27176..27353Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 27177..27353 -
1692278948.723065-CDS-Ecto-sp9_F_contig872:27176..273531692278948.723065-CDS-Ecto-sp9_F_contig872:27176..27353Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 27177..27353 -
1622930918.7356606-CDS-Ecto-sp9_F_contig872:28092..282301622930918.7356606-CDS-Ecto-sp9_F_contig872:28092..28230Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 28093..28230 -
1692278948.7341707-CDS-Ecto-sp9_F_contig872:28092..282301692278948.7341707-CDS-Ecto-sp9_F_contig872:28092..28230Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 28093..28230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig872.16906.1

>prot_Ecto-sp9_F_contig872.16906.1 ID=prot_Ecto-sp9_F_contig872.16906.1|Name=mRNA_Ecto-sp9_F_contig872.16906.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=135bp
TSPCPTRTRASRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYYH
CMTCNACVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMH
LACYKFWYRCPICRKSMEDMREYFSQMVSGRSHG*
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mRNA from alignment at Ecto-sp9_F_contig872:26744..28230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig872.16906.1 ID=mRNA_Ecto-sp9_F_contig872.16906.1|Name=mRNA_Ecto-sp9_F_contig872.16906.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1487bp|location=Sequence derived from alignment at Ecto-sp9_F_contig872:26744..28230- (Ectocarpus species9 EcSCA_722f female)
ACCTCTCCCTGTCCCACCCGAACACGCGCTTCCAGGTACTACTGCGGCAT CTGCCACCTGTTCGACGATGCCCCTGAGAAGGACATTTACCACTGCCCCT ACTGCAACGTGTGCCGACTTGGGAAAGGGCTGGGAGTGGTGAGTCGACTC GCTTTGTGGTGAAGCTTAAGAGGACGCCGCCATGTTGGAAGTGTGTGTCC TGACCCACTTTGCCTGTTTAGTCATCTCGTGAGCCGTCTCTTGGTTGCGC CGCCAATGGTTTGTGTACCCTGTGTGACTTGACCCAGTTGCCTGTTTATG GTCTCGTAAACGTCTCTTAGCCGTGTCGACCTGTTGTATATACCGCGGGT ATTACCTCGCATAGCGTGTAGAGGCGAGCGGAGTGGCCTAGGCTATCTGT CGTTGAATTTAATTGGCTTGCGGACCCTTCGGGTCCATTTTATTTTCGTA TACCTTTTTTGGGTAAGTTAGCTTGTGACCACGGGAATCGACCCCGTCAA GTGCTAGACTAGTATGGACAGAAGAAGGTACTGGGCAGAGAGAACGGAGC GGTTTTTAATGTGAAGACAACAACAACAACAATATGCTGCTGCCATGCTC TTAGAATGCGGCGGGAATATTGGGCTGGTAGATATCTCAGTTTGTTGTGT TGTTTTGGAGAATCTCTGTCCCTTGTGGCGTTGGTTGGCAATGCTTCCCC TTGATGGTAATCTACGTTTGTTTCGCTCCTTGGCCCTCATGAGCAGCCTC AGCCTCGAGTCTAGAGCATGAAGGTGCAGCGAGGTGATGAGTACACCGCT CCCCGCAGCACCTTATTTACCTTGTCTCCCTCTCTCTCCCCCCCCCCCCC CCCTTCCTCTCTTATCCACCACACCAGGACTACTACCACTGCATGACCTG CAACGCGTGCGTCTCGATGAACGCGCCGAGCCACACCTGCCTGAGCAAGA GCCTGGAGAGCGATTGCCCCATCTGCAACAACAGCCTCTTCACCTCCACC AGCCAGGTCAAGGGCCTCCGGTGCGGACACTTCATGCACCTCGCGTGCTA CAAGGTATGCAGGCTTGCTTGCGCTAGCTGGAACGGTTTGTCGCCTTAAC GGTGTTTTATCATGGAGGCTTTTATCACCTTAACGTTAACTTGTATGCCA TGTTAGGTGGTGCATCATCGTGAGCCCTCGGGGAGGATACGGAGTGGTCT TAGAATTGTCGACTTGACAGACGACCCGTCGATTTTTTGTTTTTTTCGCC GTATGATACTGCGTCCCCAAAGCTGAAAACTAAAAAAATAACCCAAACAG AAAAACACCCTACGTTATTGCCGTATCGTGATATCGATATCACACCCCTC CTTCACGACATGTACAGGAGTACATCGGGAGGGCGGAGTCGAGAGAGTTC TGGTACCGCTGTCCGATCTGCCGCAAGAGCATGGAGGACATGCGCGAGTA CTTCTCGCAGATGGTGAGTGGGCGAAGTCACGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig872:26744..28230-

>mRNA_Ecto-sp9_F_contig872.16906.1 ID=mRNA_Ecto-sp9_F_contig872.16906.1|Name=mRNA_Ecto-sp9_F_contig872.16906.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp9_F_contig872:26744..28230- (Ectocarpus species9 EcSCA_722f female)
ACCTCTCCCTGTCCCACCCGAACACGCGCTTCCAGGTACTACTGCGGCAT
CTGCCACCTGTTCGACGATGCCCCTGAGAAGGACATTTACCACTGCCCCT
ACTGCAACGTGTGCCGACTTGGGAAAGGGCTGGGAGTGACCTCTCCCTGT
CCCACCCGAACACGCGCTTCCAGGTACTACTGCGGCATCTGCCACCTGTT
CGACGATGCCCCTGAGAAGGACATTTACCACTGCCCCTACTGCAACGTGT
GCCGACTTGGGAAAGGGCTGGGAGTGGACTACTACCACTGCATGACCTGC
AACGCGTGCGTCTCGATGAACGCGCCGAGCCACACCTGCCTGAGCAAGAG
CCTGGAGAGCGATTGCCCCATCTGCAACAACAGCCTCTTCACCTCCACCA
GCCAGGTCAAGGGCCTCCGGTGCGGACACTTCATGCACCTCGCGTGCTAC
AAGGACTACTACCACTGCATGACCTGCAACGCGTGCGTCTCGATGAACGC
GCCGAGCCACACCTGCCTGAGCAAGAGCCTGGAGAGCGATTGCCCCATCT
GCAACAACAGCCTCTTCACCTCCACCAGCCAGGTCAAGGGCCTCCGGTGC
GGACACTTCATGCACCTCGCGTGCTACAAGTTCTGGTACCGCTGTCCGAT
CTGCCGCAAGAGCATGGAGGACATGCGCGAGTACTTCTCGCAGATGGTGA
GTGGGCGAAGTCACGGCTAGTTCTGGTACCGCTGTCCGATCTGCCGCAAG
AGCATGGAGGACATGCGCGAGTACTTCTCGCAGATGGTGAGTGGGCGAAG
TCACGGCTAG
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