mRNA_Ecto-sp9_F_contig872.16906.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE) HSP 1 Score: 233 bits (594), Expect = 1.230e-68 Identity = 119/135 (88.15%), Postives = 119/135 (88.15%), Query Frame = 1
Query: 7 PCPTRTRASRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYK----------FWYRCPICRKSMEDMREYFSQM 381
PC R A RYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXX VSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYK FWYRCPICRKSMEDMREYFSQM
Sbjct: 911 PCTGRKMA-RYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXCVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKEYIGRAESREFWYRCPICRKSMEDMREYFSQM 1044
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Zinc (ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z4_9STRA) HSP 1 Score: 171 bits (434), Expect = 8.990e-51 Identity = 85/138 (61.59%), Postives = 100/138 (72.46%), Query Frame = 1
Query: 10 CPTRTRA---SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSM-NAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYK----------FWYRCPICRKSMEDMREYFSQM 381
CP+ + SRYYC ICHL DD KDIYHCPYCNVCRLGKGLGVDY XXXXX V++ +A +H C++ SLES+CPIC+ +F ST QVKGLRCGHF+HL CY+ WYRCPIC +SMEDM EYF Q+
Sbjct: 64 CPSNSSTATLSRYYCAICHLHDDDASKDIYHCPYCNVCRLGKGLGVDYCHXXXXXACVTVESADTHRCVTHSLESNCPICSTGMFESTQQVKGLRCGHFLHLNCYREYVRHAEEQAHWYRCPICLRSMEDMTEYFGQL 201
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ29_HETAK) HSP 1 Score: 171 bits (432), Expect = 1.610e-50 Identity = 75/127 (59.06%), Postives = 90/127 (70.87%), Query Frame = 1
Query: 31 SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYK----------FWYRCPICRKSMEDMREYFSQM 381
SRYYC IC LFDDAP K IYHCPYCN+CRLG+GLG D+ V+++A H CL K+LE DCPIC+ LF ST + KGLRCGH +HL CY+ FW+RCP+CRKSM+DM EYFSQ+
Sbjct: 67 SRYYCAICKLFDDAPGKAIYHCPYCNLCRLGRGLGRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 193
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIX4_CYCTE) HSP 1 Score: 155 bits (391), Expect = 1.010e-43 Identity = 64/124 (51.61%), Postives = 88/124 (70.97%), Query Frame = 1
Query: 25 RASRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW-----YRCPICRKSMEDMREYFSQM 381
R ++YYC ICHL+DD PEK IYHCP+CNVCR G+GLG+DY VS+ H C+ + L++ CPIC+ S+F ST +KGL+CGH +HL+C+ + Y CP+C+KS+EDMREYF+ +
Sbjct: 147 RFAKYYCQICHLYDDDPEKQIYHCPFCNVCRSGRGLGIDYRHCMRCNACVSLEDTDHHCIPQRLQATCPICHESMFQSTEPLKGLKCGHVLHLSCFTRYMRGQSYTCPLCKKSVEDMREYFTML 270
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R513_9STRA) HSP 1 Score: 150 bits (379), Expect = 1.590e-42 Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query: 31 SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW-----YRCPICRKSMEDMREYFS 375
S+Y C IC+L+DD P K+IYHCP+CNVCR GKGLGVDY VS+ +H C+ +SL+ +CPIC+ S+F ST ++GL+CGH MHL+C+ + Y CP+C+KS+EDM++YF+
Sbjct: 100 SKYSCNICNLYDDGPNKNIYHCPFCNVCRSGKGLGVDYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCFTMYMRAQSYTCPLCKKSIEDMKDYFA 219
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJY0_9RHOD) HSP 1 Score: 154 bits (390), Expect = 1.990e-41 Identity = 79/132 (59.85%), Postives = 97/132 (73.48%), Query Frame = 1
Query: 4 SPCPTRTRASRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSM-NAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW----YRCPICRKSMEDMREYFSQMV 384
S C R +RY C IC L+DDAP +DIYHC YCNVCR+GKGLG+DYXXXXXXXXX+S NA +H C+ SLESDCP+C LFTST+ +K LRCGH MH +CY+ + YRCP+C+KS+ DM YF +
Sbjct: 462 SCCSCHERFARYVCLICKLYDDAPNRDIYHCGYCNVCRVGKGLGIDYXXXXXXXXXMSTANAKNHRCVEHSLESDCPVCGEYLFTSTNPIKFLRCGHLMHASCYRRYASTDYRCPVCKKSLADMSAYFEAQL 593
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SMK8_9STRA) HSP 1 Score: 150 bits (379), Expect = 3.000e-41 Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query: 31 SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW-----YRCPICRKSMEDMREYFS 375
S+Y C IC+L+DD P K+IYHCP+CNVCR GKGLGVDY VS+ +H C+ +SL+ +CPIC+ S+F ST ++GL+CGH MHL+C+ + Y CP+C+KS+EDM++YF+
Sbjct: 230 SKYSCNICNLYDDGPNKNIYHCPFCNVCRSGKGLGVDYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCFTMYMRAQSYTCPLCKKSIEDMKDYFA 349
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAG1_9STRA) HSP 1 Score: 146 bits (368), Expect = 7.600e-40 Identity = 67/134 (50.00%), Postives = 92/134 (68.66%), Query Frame = 1
Query: 19 RTRA--SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMN-APSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYK----FWYRCPICRKSMEDMREYFSQMVSGRSH 399
RT A +YYC +C L+D++ +++IYHCPYCNVCR+GKGLGVDY V M +H C+S+ LE +CPIC ++L ST+ +KGL CGH MHL CY+ + Y CPIC K+M+DMR+YFS++ +H
Sbjct: 178 RTHAVLGKYYCNVCKLWDNSLDREIYHCPYCNVCRVGKGLGVDYRHCMRCNCCVEMREGVTHRCISQVLEGNCPICADTLRFSTADLKGLPCGHTMHLECYRQYRAYSYTCPICLKTMDDMRDYFSRLDQAAAH 311
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Zinc (finger protein-like protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S0H4_9CHLO) HSP 1 Score: 150 bits (379), Expect = 1.520e-39 Identity = 75/125 (60.00%), Postives = 96/125 (76.80%), Query Frame = 1
Query: 22 TRASRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNA-PSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW----YRCPICRKSMEDMREYFSQM 381
TR ++YYCGICHLFDDAP++DIYHCP CNVCR GKGLG+D+XXXXXXXXX+S++ HTC +SLE++C +C+ LF S + +K L CGHFMH +C++ + Y CPIC KSM DMR YF +
Sbjct: 666 TRMAKYYCGICHLFDDAPDRDIYHCPSCNVCRRGKGLGIDFXXXXXXXXXMSISLFKKHTCRERSLEANCAVCHEYLFDSPTPIKELPCGHFMHSSCFQMYTHYNYTCPICSKSMGDMRVYFQML 790
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Match: Hypothetical (protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VUG9_9STRA) HSP 1 Score: 150 bits (379), Expect = 1.700e-39 Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query: 31 SRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYXXXXXXXXXVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKFW-----YRCPICRKSMEDMREYFS 375
S+Y C IC+L+DD P K+IYHCP+CNVCR GKGLGVDY VS+ +H C+ +SL+ +CPIC+ S+F ST ++GL+CGH MHL+C+ + Y CP+C+KS+EDM++YF+
Sbjct: 967 SKYSCNICNLYDDGPNKNIYHCPFCNVCRSGKGLGVDYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCFTMYMRAQSYTCPLCKKSIEDMKDYFA 1086 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig872.16906.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig872.16906.1 >prot_Ecto-sp9_F_contig872.16906.1 ID=prot_Ecto-sp9_F_contig872.16906.1|Name=mRNA_Ecto-sp9_F_contig872.16906.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=135bp TSPCPTRTRASRYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGVDYYHback to top mRNA from alignment at Ecto-sp9_F_contig872:26744..28230- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig872.16906.1 ID=mRNA_Ecto-sp9_F_contig872.16906.1|Name=mRNA_Ecto-sp9_F_contig872.16906.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1487bp|location=Sequence derived from alignment at Ecto-sp9_F_contig872:26744..28230- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig872:26744..28230- >mRNA_Ecto-sp9_F_contig872.16906.1 ID=mRNA_Ecto-sp9_F_contig872.16906.1|Name=mRNA_Ecto-sp9_F_contig872.16906.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp9_F_contig872:26744..28230- (Ectocarpus species9 EcSCA_722f female)back to top |