mRNA_Ecto-sp9_F_contig872.16904.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig872.16904.1
Unique NamemRNA_Ecto-sp9_F_contig872.16904.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig872.16904.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUW9_ECTSI)

HSP 1 Score: 479 bits (1232), Expect = 7.220e-166
Identity = 253/278 (91.01%), Postives = 262/278 (94.24%), Query Frame = 1 
Query:   67 GADVHPVAAGGITPLSISCSSASVAPVRILLTELGMNPMTPMNHGCLLQVILDLCQTSPVLENFLQLQATPEALRRRRLDIAELLISSGIDLEVRHLGDSAVHMAAESGSRRLMVALLRAGASTSSVGKASDSIFGTALSRAAAHSRPEVAHLLLQAGAHEKSLDQVGRDALCVAGTLVSAVPATPEEELRRRLVAVAHVLHRGPAFRAMSWRWPSAAATXXXXAVVEDNGSRTSLPSGALSGLALIPRHGKRGPRLRAAMWSSVSGNDVNEARDSGT 900
            G DVHPVAAGGITPLSISCSSASVAPVRILLTELGMNP+TPMNHGCLLQVIL LCQTSPVLE+FLQLQATPEAL+RRRLDIAELLISSGIDLEVRHLGDSAVHMAA SGSRRLMVALLRAGASTSSVGKA+D+IFGTALSRAAAHSRPEVAHLLLQAGAHE +LDQVGRDALCVAGTLVS++PATPEEELRRRL+AVAHVLHRGPAFRAMSWRWPSAAAT     VVEDNGSRTSLP GALSGL LIPRHGKRGPRLRAAMWS    NDVNE RDSGT
Sbjct:  223 GTDVHPVAAGGITPLSISCSSASVAPVRILLTELGMNPVTPMNHGCLLQVILGLCQTSPVLESFLQLQATPEALKRRRLDIAELLISSGIDLEVRHLGDSAVHMAAGSGSRRLMVALLRAGASTSSVGKANDNIFGTALSRAAAHSRPEVAHLLLQAGAHENALDQVGRDALCVAGTLVSSMPATPEEELRRRLLAVAHVLHRGPAFRAMSWRWPSAAATTTAATVVEDNGSRTSLPLGALSGLTLIPRHGKRGPRLRAAMWS----NDVNEVRDSGT 496
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig872.16904.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Ankyrin7.220e-16691.01repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig872contigEcto-sp9_F_contig872:13796..15842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score480.7
Seed ortholog evalue4.9e-133
Seed eggNOG ortholog2880.D7FUW9
Preferred namemlt-4
GOsGO:0000278,GO:0000281,GO:0000902,GO:0000904,GO:0000910,GO:0001508,GO:0002028,GO:0003008,GO:0003254,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0006810,GO:0006888,GO:0006892,GO:0006893,GO:0006996,GO:0007009,GO:0007010,GO:0007016,GO:0007049,GO:0007154,GO:0007275,GO:0007399,GO:0007409,GO:0007528,GO:0008092,GO:0008104,GO:0008150,GO:0009653,GO:0009893,GO:0009986,GO:0009987,GO:0010035,GO:0010038,GO:0010256,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010649,GO:0010650,GO:0010765,GO:0010959,GO:0010960,GO:0012505,GO:0014704,GO:0014731,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016328,GO:0016528,GO:0016529,GO:0018996,GO:0019222,GO:0019226,GO:0019228,GO:0022008,GO:0022402,GO:0022404,GO:0022407,GO:0022409,GO:0022607,GO:0022898,GO:0023052,GO:0030016,GO:0030017,GO:0030018,GO:0030030,GO:0030054,GO:0030154,GO:0030155,GO:0030182,GO:0030315,GO:0030424,GO:0030425,GO:0030507,GO:0030674,GO:0031175,GO:0031594,GO:0031674,GO:0032026,GO:0032386,GO:0032388,GO:0032409,GO:0032410,GO:0032411,GO:0032412,GO:0032413,GO:0032414,GO:0032501,GO:0032502,GO:0032507,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0033036,GO:0033157,GO:0033267,GO:0033268,GO:0034110,GO:0034112,GO:0034613,GO:0034762,GO:0034763,GO:0034764,GO:0034765,GO:0034766,GO:0034767,GO:0035637,GO:0036477,GO:0042221,GO:0042303,GO:0042383,GO:0042391,GO:0042395,GO:0042592,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043034,GO:0043194,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043267,GO:0043269,GO:0043270,GO:0043271,GO:0043292,GO:0044085,GO:0044091,GO:0044092,GO:0044093,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045185,GO:0045202,GO:0045211,GO:0045296,GO:0045760,GO:0045785,GO:0045838,GO:0046907,GO:0048193,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050808,GO:0050839,GO:0050877,GO:0050896,GO:0051049,GO:0051050,GO:0051051,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051235,GO:0051301,GO:0051641,GO:0051649,GO:0051651,GO:0051716,GO:0055065,GO:0055080,GO:0060090,GO:0060255,GO:0060341,GO:0061024,GO:0061564,GO:0061640,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070727,GO:0070887,GO:0071241,GO:0071248,GO:0071286,GO:0071702,GO:0071705,GO:0071709,GO:0071840,GO:0071944,GO:0072507,GO:0072657,GO:0072658,GO:0072659,GO:0072660,GO:0090087,GO:0090150,GO:0090313,GO:0090314,GO:0090316,GO:0097060,GO:0097447,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098876,GO:0098900,GO:0098901,GO:0098902,GO:0099080,GO:0099081,GO:0099512,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:1900825,GO:1900827,GO:1901016,GO:1901017,GO:1901379,GO:1901380,GO:1902259,GO:1902260,GO:1902305,GO:1902307,GO:1903047,GO:1903533,GO:1903817,GO:1903827,GO:1903829,GO:1904062,GO:1904063,GO:1904064,GO:1904181,GO:1904951,GO:1905475,GO:1905477,GO:1990778,GO:2000649,GO:2000651,GO:2001257,GO:2001258,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_004500.1
Exons3
Model size905
Cds size903
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig872.16904.1prot_Ecto-sp9_F_contig872.16904.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig872 13796..15842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.5173078-CDS-Ecto-sp9_F_contig872:13795..138441622930918.5173078-CDS-Ecto-sp9_F_contig872:13795..13844Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 13796..13844 -
1692278948.623875-CDS-Ecto-sp9_F_contig872:13795..138441692278948.623875-CDS-Ecto-sp9_F_contig872:13795..13844Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 13796..13844 -
1622930918.5329418-CDS-Ecto-sp9_F_contig872:14636..149951622930918.5329418-CDS-Ecto-sp9_F_contig872:14636..14995Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 14637..14995 -
1692278948.639975-CDS-Ecto-sp9_F_contig872:14636..149951692278948.639975-CDS-Ecto-sp9_F_contig872:14636..14995Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 14637..14995 -
1622930918.5476446-CDS-Ecto-sp9_F_contig872:15347..158421622930918.5476446-CDS-Ecto-sp9_F_contig872:15347..15842Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 15348..15842 -
1692278948.6519134-CDS-Ecto-sp9_F_contig872:15347..158421692278948.6519134-CDS-Ecto-sp9_F_contig872:15347..15842Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig872 15348..15842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig872.16904.1

>prot_Ecto-sp9_F_contig872.16904.1 ID=prot_Ecto-sp9_F_contig872.16904.1|Name=mRNA_Ecto-sp9_F_contig872.16904.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=301bp
STPFAVATVQKQFDAMRLLARRGADVHPVAAGGITPLSISCSSASVAPVR
ILLTELGMNPMTPMNHGCLLQVILDLCQTSPVLENFLQLQATPEALRRRR
LDIAELLISSGIDLEVRHLGDSAVHMAAESGSRRLMVALLRAGASTSSVG
KASDSIFGTALSRAAAHSRPEVAHLLLQAGAHEKSLDQVGRDALCVAGTL
VSAVPATPEEELRRRLVAVAHVLHRGPAFRAMSWRWPSAAATTTAAAVVE
DNGSRTSLPSGALSGLALIPRHGKRGPRLRAAMWSSVSGNDVNEARDSGT
*
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mRNA from alignment at Ecto-sp9_F_contig872:13796..15842-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig872.16904.1 ID=mRNA_Ecto-sp9_F_contig872.16904.1|Name=mRNA_Ecto-sp9_F_contig872.16904.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2047bp|location=Sequence derived from alignment at Ecto-sp9_F_contig872:13796..15842- (Ectocarpus species9 EcSCA_722f female)
TCCACCCCGTTCGCGGTGGCGACGGTCCAGAAGCAGTTCGACGCGATGCG
GCTTCTCGCCAGGAGGGGGGCGGACGTGCACCCGGTGGCGGCCGGTGGCA
TCACCCCGCTGAGCATCTCCTGCAGCTCGGCCTCCGTGGCCCCCGTCCGG
ATCCTTCTCACCGAGCTCGGCATGAACCCCATGACGCCGATGAACCACGG
TTGCCTCCTCCAGGTGATCCTCGACCTGTGCCAGACCTCGCCCGTGCTCG
AGAACTTCTTGCAGCTCCAGGCGACCCCGGAGGCCCTGAGGCGGCGGCGT
CTCGACATCGCCGAGCTGCTCATCTCCTCCGGCATCGACCTGGAGGTGCG
GCACCTCGGCGATTCGGCGGTCCACATGGCCGCAGAGTCAGGGTCCCGGA
GGCTCATGGTCGCCCTGCTCCGCGCCGGGGCCAGCACCTCCAGCGTGGGG
AAGGCTAGCGACAGCATCTTCGGCACGGCCCTCTCACGGGCAGCGGTGAG
CCAGTTCGGACAGACAGACAGCATCAGTCTACCTCAGAAATTTACCCCCC
CCCGAGGAGGACTGCCATTCGCAGCTGCCATCCATATGCAAGGAAGTAAG
CACAAGATGCCCACAAACACCCTTAGCAGGATGCAGCGCACCCTCGCCGA
ATACCTCACCGCGCTTCGCGCTTGGTGATGTGCTCGCAACCTCGTCCGGT
GAAAACCCGGCGTGCTCCTTCTGAGGAGGTATTTTGGTTCTTGTGCGGTC
TCGAGATTCTGACAACAATTTCGTCACCCCCCCCCGGTGTGTCCACAAGT
ACGAATATTGTTCTTACGCGCGTAACGTATATGCAAACCAACGGCAGGCC
CATTCCCGTCCAGAGGTCGCCCACCTTCTCCTGCAGGCCGGCGCGCACGA
AAAATCCCTTGACCAGGTGGGCCGGGACGCCCTGTGTGTCGCCGGAACCT
TGGTGTCGGCCGTGCCGGCGACCCCGGAGGAAGAGCTCCGGCGCCGGTTG
GTGGCCGTGGCGCACGTGCTCCACCGCGGCCCGGCGTTTCGTGCGATGTC
GTGGCGGTGGCCCAGTGCTGCCGCTACCACCACCGCCGCTGCCGTTGTGG
AAGACAACGGGTCGAGGACTAGCTTGCCCTCGGGGGCACTCTCGGGGTTA
GCGTTGATACCCCGGCATGGCAAGCGGGGGCCGAGGTTAAGGGCGGCGAT
GTGGAGGTGAGGTACATAGTAGGAGCTGCCCCTAAGAGTAAGCGCAGGGT
AGGAGTATACCACAAGATCAAGGTATGGTTTTAGTTGCTGGTGGTGTTTG
CGCCCCTAAGCTTGGCTTGTCGCATTTTGGACCGCTCGGGAACAGTACGC
GGCGAGCTGTAGGGGGGTCGAGCTTTGCGCTGTTTCGCCAAGATGTACCA
GCACAATCGCAATTGTGTGGCGATGCGTCCGGTGACGGCCTGCTTTGCTT
TTCCTCCCGTAGGATATCATGAGCAGCAATCGGACATGGATACAGTATGT
GTCACAAACTGCACCCTCCACGTTGTGCTTTGTCCCGGAGGAAAGTCTAG
GTTTGGCCTGCAGCATGCTGTTGGCAACCGCAGCAGCTGCACCCACGCCC
GTTCGGCATTTAGCAGCACGGCGCTGAAATCTCAACCAAGCGTCCACCTA
GTGATCAACTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTC
TCTCACGCTCTCTGTATGTTTGTATCATGTCTGTCTTCACCTTTGCCTCT
GCCTTTGTCTCTGTCGTTTTTGTTGTCTCTCTCTTTCTCTCCCCTCGCTC
TCTTCTCTTAATCTTTCCGGTCCTACCCTCGCCGGTGGCGTTGTGTCATC
TCGCTGTGCTACTCGACGAAATCATCGTGTGCGACTTGTCACAGGCACGC
CAACAAATGGGTCCCACTGCTGTGAGTCTCTTTCGTCTTGTTTCCGGCCA
TGACCCCTCCGCTGCTGGGTGTAATTGCTCCTGCCCCTTACCGGTGAGCT
CTGTCTCCGGCAACGACGTCAATGAAGCTCGTGATTCTGGTACTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig872:13796..15842-

>mRNA_Ecto-sp9_F_contig872.16904.1 ID=mRNA_Ecto-sp9_F_contig872.16904.1|Name=mRNA_Ecto-sp9_F_contig872.16904.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1806bp|location=Sequence derived from alignment at Ecto-sp9_F_contig872:13796..15842- (Ectocarpus species9 EcSCA_722f female)
TCCACCCCGTTCGCGGTGGCGACGGTCCAGAAGCAGTTCGACGCGATGCG
GCTTCTCGCCAGGAGGGGGGCGGACGTGCACCCGGTGGCGGCCGGTGGCA
TCACCCCGCTGAGCATCTCCTGCAGCTCGGCCTCCGTGGCCCCCGTCCGG
ATCCTTCTCACCGAGCTCGGCATGAACCCCATGACGCCGATGAACCACGG
TTGCCTCCTCCAGGTGATCCTCGACCTGTGCCAGACCTCGCCCGTGCTCG
AGAACTTCTTGCAGCTCCAGGCGACCCCGGAGGCCCTGAGGCGGCGGCGT
CTCGACATCGCCGAGCTGCTCATCTCCTCCGGCATCGACCTGGAGGTGCG
GCACCTCGGCGATTCGGCGGTCCACATGGCCGCAGAGTCAGGGTCCCGGA
GGCTCATGGTCGCCCTGCTCCGCGCCGGGGCCAGCACCTCCAGCGTGGGG
AAGGCTAGCGACAGCATCTTCGGCACGGCCCTCTCACGGGCAGCGTCCAC
CCCGTTCGCGGTGGCGACGGTCCAGAAGCAGTTCGACGCGATGCGGCTTC
TCGCCAGGAGGGGGGCGGACGTGCACCCGGTGGCGGCCGGTGGCATCACC
CCGCTGAGCATCTCCTGCAGCTCGGCCTCCGTGGCCCCCGTCCGGATCCT
TCTCACCGAGCTCGGCATGAACCCCATGACGCCGATGAACCACGGTTGCC
TCCTCCAGGTGATCCTCGACCTGTGCCAGACCTCGCCCGTGCTCGAGAAC
TTCTTGCAGCTCCAGGCGACCCCGGAGGCCCTGAGGCGGCGGCGTCTCGA
CATCGCCGAGCTGCTCATCTCCTCCGGCATCGACCTGGAGGTGCGGCACC
TCGGCGATTCGGCGGTCCACATGGCCGCAGAGTCAGGGTCCCGGAGGCTC
ATGGTCGCCCTGCTCCGCGCCGGGGCCAGCACCTCCAGCGTGGGGAAGGC
TAGCGACAGCATCTTCGGCACGGCCCTCTCACGGGCAGCGGCCCATTCCC
GTCCAGAGGTCGCCCACCTTCTCCTGCAGGCCGGCGCGCACGAAAAATCC
CTTGACCAGGTGGGCCGGGACGCCCTGTGTGTCGCCGGAACCTTGGTGTC
GGCCGTGCCGGCGACCCCGGAGGAAGAGCTCCGGCGCCGGTTGGTGGCCG
TGGCGCACGTGCTCCACCGCGGCCCGGCGTTTCGTGCGATGTCGTGGCGG
TGGCCCAGTGCTGCCGCTACCACCACCGCCGCTGCCGTTGTGGAAGACAA
CGGGTCGAGGACTAGCTTGCCCTCGGGGGCACTCTCGGGGTTAGCGTTGA
TACCCCGGCATGGCAAGCGGGGGCCGAGGTTAAGGGCGGCGATGTGGAGG
CCCATTCCCGTCCAGAGGTCGCCCACCTTCTCCTGCAGGCCGGCGCGCAC
GAAAAATCCCTTGACCAGGTGGGCCGGGACGCCCTGTGTGTCGCCGGAAC
CTTGGTGTCGGCCGTGCCGGCGACCCCGGAGGAAGAGCTCCGGCGCCGGT
TGGTGGCCGTGGCGCACGTGCTCCACCGCGGCCCGGCGTTTCGTGCGATG
TCGTGGCGGTGGCCCAGTGCTGCCGCTACCACCACCGCCGCTGCCGTTGT
GGAAGACAACGGGTCGAGGACTAGCTTGCCCTCGGGGGCACTCTCGGGGT
TAGCGTTGATACCCCGGCATGGCAAGCGGGGGCCGAGGTTAAGGGCGGCG
ATGTGGAGCTCTGTCTCCGGCAACGACGTCAATGAAGCTCGTGATTCTGG
TACTTGACTCTGTCTCCGGCAACGACGTCAATGAAGCTCGTGATTCTGGT
ACTTGA
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