mRNA_Ecto-sp9_F_contig1177.1467.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1177.1467.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI) HSP 1 Score: 353 bits (907), Expect = 9.540e-110 Identity = 171/174 (98.28%), Postives = 172/174 (98.85%), Query Frame = 1
Query: 1 LQHTLAFGIGIHHAGLAEGDRNIVEALFEKGKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDRAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYALEDTSTEGVQ 522
LQHTLAFGIGIHHAGLAEGDRNIVEALFE+GKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDD AVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFY LEDTSTEGVQ
Sbjct: 1747 LQHTLAFGIGIHHAGLAEGDRNIVEALFEQGKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDHAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYGLEDTSTEGVQ 1920
BLAST of mRNA_Ecto-sp9_F_contig1177.1467.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTV5_HETAK) HSP 1 Score: 283 bits (723), Expect = 2.420e-89 Identity = 132/174 (75.86%), Postives = 152/174 (87.36%), Query Frame = 1
Query: 1 LQHTLAFGIGIHHAGLAEGDRNIVEALFEKGKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDRAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYALEDTSTEGVQ 522
L+HTL FG+GIHHAGL E DR +VE LFE GK+QVLVCTSTLAWGVNFPAHLVVVKGTEFFDGK RYVDFPITD+LQM+GRAGRPQFDD AVA +LVHEPKK F++KFLY PFPVES L LHNH+SAE AGG+I+S++DAV+YLTWT++F RL+ NP++Y LED S EGVQ
Sbjct: 450 LRHTLVFGVGIHHAGLDEHDRTVVEELFEAGKLQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKQGRYVDFPITDVLQMMGRAGRPQFDDTAVAAVLVHEPKKIFYQKFLYSPFPVESSLREYLHNHISAEVAGGSIKSKQDAVEYLTWTYFFRRLVMNPTYYHLEDPSPEGVQ 623
BLAST of mRNA_Ecto-sp9_F_contig1177.1467.1 vs.
Match: Activating (signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA) HSP 1 Score: 276 bits (707), Expect = 7.570e-83 Identity = 127/174 (72.99%), Postives = 151/174 (86.78%), Query Frame = 1
Query: 1 LQHTLAFGIGIHHAGLAEGDRNIVEALFEKGKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDRAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYALEDTSTEGVQ 522
L+HTL FGIGIHHAGL + DR VE LF GKIQVLVCTSTLAWGVNFPAHLVV+KGTE+FDGK+ RYVDFP+TD+LQM+GRAGRPQFD R VACILVHEPKKNF KKFLYEPFPVES L LHNHL+AE +GG+++++ A++YLTWTF+F RL+ NP++Y+LE+T+ E VQ
Sbjct: 1664 LRHTLVFGIGIHHAGLDDHDRITVENLFVTGKIQVLVCTSTLAWGVNFPAHLVVIKGTEYFDGKTSRYVDFPVTDILQMMGRAGRPQFDTRGVACILVHEPKKNFIKKFLYEPFPVESSLKDVLHNHLNAEVSGGSVQNKEQAMEYLTWTFFFRRLVMNPTYYSLEETAPEAVQ 1837
BLAST of mRNA_Ecto-sp9_F_contig1177.1467.1 vs.
Match: Sec63 (Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M6_9STRA) HSP 1 Score: 275 bits (703), Expect = 2.510e-82 Identity = 130/173 (75.14%), Postives = 149/173 (86.13%), Query Frame = 1
Query: 1 LQHTLAFGIGIHHAGLAEGDRNIVEALFEKGKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDRAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYALEDTSTEGV 519
L+HTL FGIGIHHAGL E DR++VE LF GK+QVLVCTSTLAWGVNFPAHLVVVKGTE+FDG+ RYVDFP+TD+LQMIGRAGRPQFD AVA ILVHEPKKNF KKFLYEPFPVES+L +L NH++AE AGGAI SR DA+ Y+TWT+ F R++ NPS+Y LEDT+ EGV
Sbjct: 980 LRHTLPFGIGIHHAGLDEADRSVVEELFGAGKLQVLVCTSTLAWGVNFPAHLVVVKGTEYFDGRLGRYVDFPVTDVLQMIGRAGRPQFDTHAVAVILVHEPKKNFLKKFLYEPFPVESQLAGALPNHINAEIAGGAIGSREDALAYMTWTYLFRRIVQNPSYYQLEDTTPEGV 1152
BLAST of mRNA_Ecto-sp9_F_contig1177.1467.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PZ95_9EUKA) HSP 1 Score: 261 bits (667), Expect = 7.530e-82 Identity = 120/172 (69.77%), Postives = 145/172 (84.30%), Query Frame = 1
Query: 1 LQHTLAFGIGIHHAGLAEGDRNIVEALFEKGKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDRAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYALEDTSTEG 516
L+HTL+FGIGIHHAGL E DR +VE LF I VLVCTSTLAWGVNFPAHLVV+KGTE++D K++RYVDFP+TD+LQM+GRAGRPQFD+R VACILVHEPKK F+KKFLYEPFPVES+L LH+H +AE G IRS++DAVD+LTWT+++ RL NP++Y+ D S EG
Sbjct: 151 LKHTLSFGIGIHHAGLEESDRVLVERLFLSQSILVLVCTSTLAWGVNFPAHLVVIKGTEYYDAKTKRYVDFPVTDVLQMMGRAGRPQFDERGVACILVHEPKKTFYKKFLYEPFPVESQLQNQLHDHFNAEVVTGTIRSKQDAVDFLTWTYFYRRLGKNPAYYSQPDASEEG 322
BLAST of mRNA_Ecto-sp9_F_contig1177.1467.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P6J2_GUITH) HSP 1 Score: 258 bits (660), Expect = 1.200e-80 Identity = 119/173 (68.79%), Postives = 144/173 (83.24%), Query Frame = 1
Query: 1 LQHTLAFGIGIHHAGLAEGDRNIVEALFEKGKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDRAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYALEDTSTEGV 519
L+HTL+FGIG+HHAGL E DR++VE LFE+ KIQVL TSTLAWGVN PAHLVVVKGTEF+D S+RYVDFPITD+LQM+GRAGRPQFD +A ++VH PKK+F+K+FLYEPFPVES L LHNHL+AE G I+ + A+DYLTWT++F RLL NPS+Y LEDTS +G+
Sbjct: 103 LRHTLSFGIGLHHAGLCESDRSLVENLFEQSKIQVLCSTSTLAWGVNLPAHLVVVKGTEFYDAPSKRYVDFPITDVLQMMGRAGRPQFDTVGIAVVMVHAPKKSFWKRFLYEPFPVESALSDVLHNHLNAEIVNGTIKCKMHAIDYLTWTYFFRRLLCNPSYYHLEDTSKDGI 275
BLAST of mRNA_Ecto-sp9_F_contig1177.1467.1 vs.
Match: DExH-box (ATP-dependent RNA helicase DExH14 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HM85_VITVI) HSP 1 Score: 252 bits (643), Expect = 2.460e-80 Identity = 114/171 (66.67%), Postives = 139/171 (81.29%), Query Frame = 1
Query: 1 LQHTLAFGIGIHHAGLAEGDRNIVEALFEKGKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDRAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYALEDTSTE 513
L+HTL FGIG+HHAGL + DR++VE LF KIQVLVCTSTLAWGVN PAHLV++KGTEF+DGK++RYVDFPITD+LQM+GRAGRPQ+D A ILVHEPKK+F+KKFLYEPFPVES L H+H++AE G I + DA+ YLTWT+ F RL+ NP++Y L+DT E
Sbjct: 71 LRHTLQFGIGLHHAGLNDKDRSLVEELFSNNKIQVLVCTSTLAWGVNLPAHLVIIKGTEFYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREHFHDHINAEIVSGTICHKEDAMHYLTWTYLFRRLMVNPAYYGLDDTDPE 241
BLAST of mRNA_Ecto-sp9_F_contig1177.1467.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TG59_SELML) HSP 1 Score: 262 bits (670), Expect = 3.930e-80 Identity = 120/173 (69.36%), Postives = 144/173 (83.24%), Query Frame = 1
Query: 1 LQHTLAFGIGIHHAGLAEGDRNIVEALFEKGKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDRAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYALEDTSTEGV 519
L+HTL FGIG+HHAGL + DR +VE LF KIQVLVCTSTLAWG+N PAHLVV+KGTE+FDGKS+RY+D+PITD+LQM+GRAGRPQFD A ILVHEPKK+F+KKFLYEPFPVES L LHNHL+AE A G I +++DA+ YLTWT+ + RL+ NPS+Y LEDT+ E V
Sbjct: 285 LKHTLQFGIGLHHAGLCDSDRTLVEELFYNNKIQVLVCTSTLAWGINLPAHLVVIKGTEYFDGKSKRYIDYPITDVLQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLVHHLHNHLNAEIAAGTIATKQDALYYLTWTYLYRRLVMNPSYYGLEDTAAESV 457
BLAST of mRNA_Ecto-sp9_F_contig1177.1467.1 vs.
Match: DEAD/DEAH (box helicase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UF37_9ARCH) HSP 1 Score: 260 bits (664), Expect = 2.900e-79 Identity = 121/174 (69.54%), Postives = 147/174 (84.48%), Query Frame = 1
Query: 1 LQHTLAFGIGIHHAGLAEGDRNIVEALFEKGKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDRAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYALEDTSTEGVQ 522
L+HTL FG+GIHHAGL E DR +VE LF KI+VLVCTSTLAWGVNFPA LVV+KGTEFFD K+ RYVDFPITD+LQM+GRAGRPQF++ VA ILVHEPKK F++KFLYEPFPVES+L +L +H++AE +GG+I R DA++YLTWT++F RLL NP +Y+LEDTS GV+
Sbjct: 317 LRHTLTFGVGIHHAGLCESDRTLVEDLFVNMKIRVLVCTSTLAWGVNFPARLVVIKGTEFFDAKTSRYVDFPITDVLQMMGRAGRPQFNETGVAVILVHEPKKKFYQKFLYEPFPVESQLRGALVDHINAEVSGGSIICRNDALEYLTWTYFFRRLLQNPGYYSLEDTSPAGVK 490
BLAST of mRNA_Ecto-sp9_F_contig1177.1467.1 vs.
Match: Uncharacterized (protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WZK4_MARPO) HSP 1 Score: 266 bits (679), Expect = 4.380e-79 Identity = 125/173 (72.25%), Postives = 143/173 (82.66%), Query Frame = 1
Query: 1 LQHTLAFGIGIHHAGLAEGDRNIVEALFEKGKIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQMIGRAGRPQFDDRAVACILVHEPKKNFFKKFLYEPFPVESKLPASLHNHLSAECAGGAIRSRRDAVDYLTWTFYFVRLLANPSFYALEDTSTEGV 519
L+HTL FGIG+HHAGL E DR +VE LF KIQVLVCTSTLAWGVN PAHLVV+KGTEFFDGK +RYVDFPITD+LQM+GRAGRPQ+D A ILVHEPKK+F+KKFLYEPFPVES L LHNH +AE G I S++DAVDYLTWT+ F RL+ NPS+Y LEDTS+E +
Sbjct: 1394 LKHTLQFGIGLHHAGLNERDRTLVEELFTNVKIQVLVCTSTLAWGVNLPAHLVVIKGTEFFDGKQKRYVDFPITDVLQMMGRAGRPQYDQHGKAIILVHEPKKSFYKKFLYEPFPVESSLAQHLHNHFNAEVVSGTIASKQDAVDYLTWTYLFRRLVMNPSYYNLEDTSSETI 1566 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1177.1467.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1177.1467.1 >prot_Ecto-sp9_F_contig1177.1467.1 ID=prot_Ecto-sp9_F_contig1177.1467.1|Name=mRNA_Ecto-sp9_F_contig1177.1467.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=180bp LQHTLAFGIGIHHAGLAEGDRNIVEALFEKGKIQVLVCTSTLAWGVNFPAback to top mRNA from alignment at Ecto-sp9_F_contig1177:675..3364+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1177.1467.1 ID=mRNA_Ecto-sp9_F_contig1177.1467.1|Name=mRNA_Ecto-sp9_F_contig1177.1467.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1177:675..3364+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1177:675..3364+ >mRNA_Ecto-sp9_F_contig1177.1467.1 ID=mRNA_Ecto-sp9_F_contig1177.1467.1|Name=mRNA_Ecto-sp9_F_contig1177.1467.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1177:675..3364+ (Ectocarpus species9 EcSCA_722f female)back to top |