mRNA_Ecto-sp9_F_contig1176.1465.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1176.1465.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH1_9PHAE) HSP 1 Score: 750 bits (1937), Expect = 4.470e-258 Identity = 473/568 (83.27%), Postives = 484/568 (85.21%), Query Frame = 1
Query: 1 MSLRELLGLNDAEHRPQQICAPPATGLNLQRSLVPAGAAATGPARSRSRSSSRESGHTARRLNTGESWREEEQRRIQRMDPGGRGGGGAGHVPDGCGVATSAFAHRQQQPPASGSEAHGQQGGVVWRXXXXDWATGASSRDQLNREFXXXXXXXXXXXXXXLEARHRWEQHHRQIKEGQEKQGQQFLSEVARKYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRESASGVGRVSHNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKKKEGEAGNKQELVALKAGHGVAVDHLNMLVGLVEEMTQKWERQLDDGGEGGWDDDMLAREGTEAMNAIRSAALEGPGLPIGVIDWPGVASSLWRRHSVAWSPQLCQGLWKFVAYGDVGAAMNALPRAGETLNGAWTRQDLLYDSDTEALSVNPLFISKKDTTSKVPRWGRSRLNPAGKREWSLAEKARSEEPLRRAPMLMSGSIDLRHSPDRPGRVGKQAAGRASDEDQLVPLCTIAARPTFARTRKRPAKGIARPRDPLSPRSAKAAAEIAQGEARV 1704
MSLRELLGLNDAE RPQQICAPPATGLNLQRSLVPAG AA+GPARSRS SSSRESG TARRLNTGESWREEE RRIQRMDPGGRGGGG+G VPDGCGVATSAFAHRQQQPPASGSEAHGQQGGVVWR DWATGAS+RDQLNREF XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RESASGVGR+SHNPS XXXXXXXXXXXXXXXXXX DK EG+AGNKQELVALKAGHGVAVDHLNMLV LVEEMT KWERQLDDGGEGGWDD MLAREGTEA+ AIRSAALEGPGLPIGVIDWPGVASSLWRRHSVAWSPQLCQGLWKFVAYGDVGAAMNALPRAGETLNGAWTRQDLLYDSDTEALSVNPLFISK+DTTSK+PRWGRSR NPAGKREWSLAEKARSEEPLRRAPMLMSGSIDLRHSPDRPGRVGKQAAGRASDEDQLVPLCTIAARPTF RTRKRPAKGIARPRDP SPRSAKAAAEIA+ EA++
Sbjct: 1 MSLRELLGLNDAEPRPQQICAPPATGLNLQRSLVPAGGAASGPARSRSSSSSRESGDTARRLNTGESWREEEHRRIQRMDPGGRGGGGSGQVPDGCGVATSAFAHRQQQPPASGSEAHGQQGGVVWRGGGVDWATGASNRDQLNREFLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESASGVGRISHNPSPSPPPLXXXXXXXXXXXXXXXXXXQENKTLKKEQHQRRKEGAAADKTHEGQAGNKQELVALKAGHGVAVDHLNMLVSLVEEMTHKWERQLDDGGEGGWDDGMLAREGTEAVKAIRSAALEGPGLPIGVIDWPGVASSLWRRHSVAWSPQLCQGLWKFVAYGDVGAAMNALPRAGETLNGAWTRQDLLYDSDTEALSVNPLFISKEDTTSKIPRWGRSRSNPAGKREWSLAEKARSEEPLRRAPMLMSGSIDLRHSPDRPGRVGKQAAGRASDEDQLVPLCTIAARPTFVRTRKRPAKGIARPRDPPSPRSAKAAAEIAEAEAQM 565
BLAST of mRNA_Ecto-sp9_F_contig1176.1465.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC1_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 2.870e-12 Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1
Query: 952 MLVGLVEEMTQKWERQLDDGGEGGWDDDMLAREGT 1056
MLVGLVEEMT KWERQLDDGGEGGWDDDMLAREGT
Sbjct: 1 MLVGLVEEMTHKWERQLDDGGEGGWDDDMLAREGT 35 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1176.1465.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1176.1465.1 >prot_Ecto-sp9_F_contig1176.1465.1 ID=prot_Ecto-sp9_F_contig1176.1465.1|Name=mRNA_Ecto-sp9_F_contig1176.1465.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=987bp MSLRELLGLNDAEHRPQQICAPPATGLNLQRSLVPAGAAATGPARSRSRSback to top mRNA from alignment at Ecto-sp9_F_contig1176:17610..23862- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1176.1465.1 ID=mRNA_Ecto-sp9_F_contig1176.1465.1|Name=mRNA_Ecto-sp9_F_contig1176.1465.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6253bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1176:17610..23862- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1176:17610..23862- >mRNA_Ecto-sp9_F_contig1176.1465.1 ID=mRNA_Ecto-sp9_F_contig1176.1465.1|Name=mRNA_Ecto-sp9_F_contig1176.1465.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=5922bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1176:17610..23862- (Ectocarpus species9 EcSCA_722f female)back to top |